Wall clock time and date at job start Tue Mar 31 2020 16:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36942 * 119.99705 * 2 1 4 4 H 1.07997 * 119.99662 * 202.83802 * 3 2 1 5 5 C 1.38812 * 119.99871 * 22.85168 * 3 2 1 6 6 N 1.31614 * 120.00517 * 13.22853 * 5 3 2 7 7 Si 1.86799 * 119.99664 * 193.24016 * 5 3 2 8 8 H 1.48500 * 109.47487 * 359.97438 * 7 5 3 9 9 H 1.48494 * 109.47327 * 119.99638 * 7 5 3 10 10 H 1.48499 * 109.46962 * 239.99591 * 7 5 3 11 11 C 1.46497 * 120.00268 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.47089 * 90.00105 * 11 2 1 13 13 H 1.08998 * 110.88814 * 308.88480 * 12 11 2 14 14 C 1.55163 * 111.03643 * 72.78242 * 12 11 2 15 15 C 1.54337 * 103.01780 * 153.39572 * 14 12 11 16 16 N 1.47018 * 107.26811 * 338.14349 * 15 14 12 17 17 C 1.34780 * 125.65128 * 178.84454 * 16 15 14 18 18 O 1.21271 * 120.00429 * 179.69268 * 17 16 15 19 19 C 1.50703 * 119.99577 * 359.69738 * 17 16 15 20 20 H 1.08998 * 112.54981 * 50.35915 * 19 17 16 21 21 C 1.52878 * 113.16361 * 180.22384 * 19 17 16 22 22 C 1.51445 * 84.73713 * 115.22601 * 21 19 17 23 23 C 1.38968 * 145.49410 * 180.02562 * 22 21 19 24 24 C 1.37933 * 120.34884 * 179.97438 * 23 22 21 25 25 C 1.38460 * 120.15751 * 359.97397 * 24 23 22 26 26 F 1.35102 * 120.15608 * 179.97438 * 25 24 23 27 27 C 1.38402 * 119.69297 * 0.21308 * 25 24 23 28 28 C 1.38205 * 120.10146 * 359.59701 * 27 25 24 29 29 C 1.47423 * 108.70204 * 358.58566 * 16 15 14 30 30 H 1.08999 * 109.47080 * 275.12266 * 1 2 3 31 31 H 1.08999 * 109.47345 * 35.12517 * 1 2 3 32 32 H 1.09001 * 109.47231 * 155.12577 * 1 2 3 33 33 H 0.97001 * 120.00285 * 179.97438 * 6 5 3 34 34 H 1.09000 * 109.46885 * 330.00346 * 11 2 1 35 35 H 1.08998 * 109.47128 * 210.00278 * 11 2 1 36 36 H 1.08995 * 110.72495 * 271.95226 * 14 12 11 37 37 H 1.09001 * 110.71561 * 35.05399 * 14 12 11 38 38 H 1.09000 * 109.99080 * 218.66344 * 15 14 12 39 39 H 1.08999 * 109.77765 * 97.50223 * 15 14 12 40 40 H 1.09006 * 113.99177 * 229.16615 * 21 19 17 41 41 H 1.08997 * 113.99294 * 1.27795 * 21 19 17 42 42 H 1.07991 * 119.82348 * 359.95622 * 23 22 21 43 43 H 1.08002 * 119.92235 * 179.97438 * 24 23 22 44 44 H 1.08000 * 119.94606 * 179.65054 * 27 25 24 45 45 H 1.09005 * 110.36439 * 143.19390 * 29 16 15 46 46 H 1.08995 * 110.36817 * 265.51304 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1661 1.2226 -0.3630 5 6 1.5372 2.3409 0.4669 6 7 0.4114 2.2613 1.1440 7 14 2.3108 4.0082 0.1337 8 1 3.5641 3.8265 -0.6418 9 1 1.3639 4.8467 -0.6444 10 1 2.6197 4.6770 1.4231 11 6 2.1975 -1.2687 0.0006 12 6 2.4526 -1.7110 -1.4417 13 1 1.5295 -1.6978 -2.0212 14 6 3.5413 -0.8303 -2.1101 15 6 4.1384 -1.7683 -3.1805 16 7 3.8370 -3.1473 -2.7694 17 6 4.1704 -4.2610 -3.4514 18 8 3.8740 -5.3521 -3.0130 19 6 4.9116 -4.1502 -4.7589 20 1 5.7910 -3.5102 -4.6879 21 6 5.2049 -5.5064 -5.4007 22 6 4.2815 -5.0285 -6.5018 23 6 3.6904 -5.3457 -7.7188 24 6 2.8489 -4.4467 -8.3402 25 6 2.5864 -3.2200 -7.7541 26 9 1.7625 -2.3393 -8.3630 27 6 3.1759 -2.8983 -6.5440 28 6 4.0159 -3.8013 -5.9203 29 6 3.1152 -3.1105 -1.4845 30 1 -0.3633 0.0918 1.0236 31 1 -0.3634 0.8405 -0.5913 32 1 -0.3634 -0.9323 -0.4323 33 1 -0.0163 3.0683 1.4705 34 1 1.6084 -2.0281 0.5147 35 1 3.1499 -1.1381 0.5144 36 1 3.0951 0.0506 -2.5716 37 1 4.3018 -0.5407 -1.3849 38 1 5.2175 -1.6266 -3.2400 39 1 3.6815 -1.5617 -4.1483 40 1 6.2409 -5.6331 -5.7151 41 1 4.8198 -6.3560 -4.8369 42 1 3.8913 -6.3010 -8.1807 43 1 2.3935 -4.7002 -9.2862 44 1 2.9785 -1.9403 -6.0859 45 1 2.3550 -3.8912 -1.4540 46 1 3.8121 -3.2258 -0.6544 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317848606.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:47:53 Heat of formation + Delta-G solvation = -4.084134 kcal Electronic energy + Delta-G solvation = -28318.597503 eV Core-core repulsion = 24317.076847 eV Total energy + Delta-G solvation = -4001.520656 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 4.14 seconds Orbital eigenvalues (eV) -49.96772 -42.20794 -40.45261 -38.85848 -37.10679 -36.04261 -33.92305 -32.26399 -31.85748 -30.37479 -28.77086 -27.94681 -27.39154 -25.89888 -24.25364 -23.34880 -23.04037 -21.79994 -21.09230 -20.01765 -18.77548 -18.69406 -18.16249 -17.64725 -17.16414 -16.84268 -16.65939 -16.54468 -16.22542 -15.71257 -15.31298 -15.16963 -14.93868 -14.73707 -14.54247 -14.47631 -14.29954 -13.87661 -13.62293 -13.46790 -13.26745 -13.01901 -12.86225 -12.79867 -12.74675 -12.65178 -12.41697 -12.35052 -12.15949 -11.94546 -11.80304 -11.65500 -11.56581 -11.38257 -11.08148 -10.59848 -10.02509 -9.70414 -9.51767 -8.72984 -7.77450 -5.25852 0.01162 0.12909 1.43248 1.48339 1.50349 1.59520 1.91101 2.48377 2.54445 2.78013 3.21139 3.34910 3.36552 3.41882 3.50203 3.67472 3.74417 3.90869 3.95596 4.14009 4.19583 4.27633 4.33001 4.41598 4.47693 4.56965 4.63684 4.66138 4.81698 4.84346 4.84549 4.87700 4.93970 5.00235 5.04497 5.06206 5.11928 5.17135 5.24295 5.29947 5.39877 5.50157 5.53987 5.69201 5.74450 5.81751 6.37341 6.46582 7.01422 7.19553 7.91679 8.37127 9.26572 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014476 B = 0.002866 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.750233 B = 9766.032737 C =10724.609627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.615 5.615 3 C -0.246 4.246 4 H 0.083 0.917 5 C -0.061 4.061 6 N -0.944 5.944 7 Si 0.962 3.038 8 H -0.259 1.259 9 H -0.297 1.297 10 H -0.298 1.298 11 C 0.162 3.838 12 C -0.106 4.106 13 H 0.061 0.939 14 C -0.110 4.110 15 C 0.103 3.897 16 N -0.612 5.612 17 C 0.537 3.463 18 O -0.576 6.576 19 C -0.055 4.055 20 H 0.149 0.851 21 C -0.048 4.048 22 C -0.131 4.131 23 C -0.071 4.071 24 C -0.143 4.143 25 C 0.077 3.923 26 F -0.146 7.146 27 C -0.129 4.129 28 C -0.113 4.113 29 C 0.116 3.884 30 H 0.003 0.997 31 H 0.014 0.986 32 H 0.025 0.975 33 H 0.244 0.756 34 H 0.044 0.956 35 H 0.053 0.947 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.095 0.905 39 H 0.072 0.928 40 H 0.137 0.863 41 H 0.102 0.898 42 H 0.160 0.840 43 H 0.161 0.839 44 H 0.133 0.867 45 H 0.063 0.937 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.018 -15.205 -18.653 26.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.338 5.338 3 C -0.376 4.376 4 H 0.101 0.899 5 C -0.255 4.255 6 N -0.592 5.592 7 Si 0.791 3.209 8 H -0.183 1.183 9 H -0.225 1.225 10 H -0.225 1.225 11 C 0.035 3.965 12 C -0.128 4.128 13 H 0.079 0.921 14 C -0.148 4.148 15 C -0.019 4.019 16 N -0.344 5.344 17 C 0.327 3.673 18 O -0.456 6.456 19 C -0.076 4.076 20 H 0.166 0.834 21 C -0.084 4.084 22 C -0.131 4.131 23 C -0.089 4.089 24 C -0.161 4.161 25 C 0.058 3.942 26 F -0.125 7.125 27 C -0.148 4.148 28 C -0.114 4.114 29 C -0.007 4.007 30 H 0.021 0.979 31 H 0.032 0.968 32 H 0.044 0.956 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.113 0.887 39 H 0.090 0.910 40 H 0.155 0.845 41 H 0.120 0.880 42 H 0.178 0.822 43 H 0.179 0.821 44 H 0.151 0.849 45 H 0.082 0.918 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.754 -15.673 -18.430 26.897 hybrid contribution -0.725 1.728 0.193 1.884 sum 11.029 -13.945 -18.237 25.469 Atomic orbital electron populations 1.20511 0.83328 0.95571 0.97491 1.44105 1.01778 1.01815 1.86092 1.19624 0.98432 0.86091 1.33442 0.89938 1.25797 0.98762 1.01872 0.99053 1.70249 1.21212 1.27200 1.40526 0.85260 0.78207 0.80454 0.76930 1.18273 1.22483 1.22501 1.20755 0.95976 0.86811 0.92945 1.22851 0.97698 0.92954 0.99266 0.92060 1.22507 0.97585 0.97339 0.97360 1.22260 1.01645 0.79514 0.98449 1.48606 1.56132 1.06829 1.22805 1.20276 0.79116 0.82446 0.85510 1.90670 1.56748 1.27596 1.70609 1.21431 0.97708 1.00652 0.87784 0.83358 1.21810 1.00562 0.95432 0.90614 1.22698 0.98715 0.96053 0.95624 1.20693 0.94632 1.00261 0.93313 1.21293 1.00535 0.92019 1.02256 1.17598 0.94005 0.89371 0.93183 1.91495 1.70090 1.68309 1.82580 1.20227 0.98671 1.01192 0.94727 1.21064 0.97697 0.95712 0.96911 1.22194 0.95531 0.97336 0.85646 0.97853 0.96765 0.95616 0.94633 0.93722 0.92850 0.90917 0.90604 0.88671 0.90963 0.84495 0.88001 0.82221 0.82122 0.84948 0.91837 0.90478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.68 8.98 127.77 1.15 9.83 16 2 N -0.62 -29.40 2.91 -726.94 -2.11 -31.51 16 3 C -0.25 -12.65 9.16 84.03 0.77 -11.88 16 4 H 0.08 3.98 7.09 -2.91 -0.02 3.95 16 5 C -0.06 -3.31 5.10 84.86 0.43 -2.88 16 6 N -0.94 -55.69 10.71 21.65 0.23 -55.46 16 7 Si 0.96 43.92 29.57 68.60 2.03 45.95 16 8 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 9 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 10 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 11 C 0.16 6.07 5.17 86.38 0.45 6.52 16 12 C -0.11 -3.31 3.26 -9.40 -0.03 -3.34 16 13 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 14 C -0.11 -3.06 5.29 31.79 0.17 -2.89 16 15 C 0.10 2.22 6.47 86.73 0.56 2.78 16 16 N -0.61 -15.42 3.33 -811.80 -2.70 -18.12 16 17 C 0.54 13.70 7.35 87.66 0.64 14.35 16 18 O -0.58 -18.72 15.92 -3.00 -0.05 -18.77 16 19 C -0.06 -0.96 3.35 -14.65 -0.05 -1.01 16 20 H 0.15 1.72 8.11 -2.39 -0.02 1.70 16 21 C -0.05 -0.68 7.91 30.04 0.24 -0.44 16 22 C -0.13 -2.21 7.32 -21.76 -0.16 -2.37 16 23 C -0.07 -1.02 10.04 22.37 0.22 -0.79 16 24 C -0.14 -2.27 10.01 22.25 0.22 -2.05 16 25 C 0.08 1.62 7.31 22.36 0.16 1.78 16 26 F -0.15 -3.41 17.27 44.97 0.78 -2.63 16 27 C -0.13 -2.74 9.85 22.30 0.22 -2.53 16 28 C -0.11 -2.21 6.94 -19.82 -0.14 -2.35 16 29 C 0.12 3.23 6.37 86.85 0.55 3.79 16 30 H 0.00 0.17 7.34 -2.39 -0.02 0.16 16 31 H 0.01 0.74 7.34 -2.39 -0.02 0.72 16 32 H 0.03 1.08 8.03 -2.39 -0.02 1.06 16 33 H 0.24 14.11 8.31 -92.71 -0.77 13.34 16 34 H 0.04 1.61 8.07 -2.39 -0.02 1.60 16 35 H 0.05 1.97 7.87 -2.39 -0.02 1.95 16 36 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.08 2.12 7.75 -2.39 -0.02 2.11 16 38 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.07 1.47 6.76 -2.39 -0.02 1.45 16 40 H 0.14 1.01 8.14 -2.38 -0.02 0.99 16 41 H 0.10 1.80 7.02 -2.39 -0.02 1.79 16 42 H 0.16 1.30 8.06 -2.92 -0.02 1.27 16 43 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 44 H 0.13 2.73 6.98 -2.91 -0.02 2.71 16 45 H 0.06 1.90 8.04 -2.38 -0.02 1.89 16 46 H 0.08 2.04 8.04 -2.39 -0.02 2.02 16 Total: -1.00 -68.65 376.34 4.57 -64.08 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: 0.98 Total: 9.97 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: 5.41 Total: 6.50 kcal Atomic # 7 Polarization: -100.51 SS G_CDS: -4.58 Total: -105.09 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.05 Total: -18.77 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.78 Total: -2.63 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -68.65 4.57 -64.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317848606.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.996 kcal (2) G-P(sol) polarization free energy of solvation -68.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.14 seconds