Wall clock time and date at job start Tue Mar 31 2020 18:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52990 * 109.47472 * 2 1 4 4 C 1.53001 * 109.47000 * 120.00168 * 2 1 3 5 5 C 1.53005 * 109.47448 * 64.99583 * 4 2 1 6 6 H 1.08995 * 109.47061 * 305.00289 * 5 4 2 7 7 C 1.52994 * 109.47194 * 184.99753 * 5 4 2 8 8 N 1.46503 * 109.47152 * 184.99722 * 7 5 4 9 9 C 1.36931 * 119.99947 * 180.02562 * 8 7 5 10 10 H 1.07992 * 120.00612 * 0.02562 * 9 8 7 11 11 C 1.38818 * 119.99553 * 180.02562 * 9 8 7 12 12 N 1.31609 * 120.00257 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99846 * 180.02562 * 11 9 8 14 14 H 1.48508 * 109.47051 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.47251 * 119.99763 * 13 11 9 16 16 H 1.48497 * 109.47199 * 240.00110 * 13 11 9 17 17 N 1.46502 * 109.46706 * 65.00122 * 5 4 2 18 18 C 1.34781 * 119.99899 * 274.99985 * 17 5 4 19 19 O 1.21563 * 119.99892 * 0.02562 * 18 17 5 20 20 C 1.47725 * 119.99641 * 180.02562 * 18 17 5 21 21 C 1.40111 * 120.35433 * 359.97438 * 20 18 17 22 22 N 1.31259 * 121.14814 * 180.02562 * 21 20 18 23 23 C 1.32719 * 121.80447 * 0.02562 * 22 21 20 24 24 N 1.37110 * 133.40651 * 179.97438 * 23 22 21 25 25 H 0.97006 * 126.59146 * 0.03152 * 24 23 22 26 26 N 1.40192 * 106.82210 * 180.02562 * 24 23 22 27 27 N 1.28673 * 109.50657 * 359.97438 * 26 24 23 28 28 C 1.35335 * 109.99789 * 359.97438 * 27 26 24 29 29 C 1.39433 * 120.34541 * 179.97438 * 20 18 17 30 30 H 1.09000 * 109.47513 * 59.99871 * 1 2 3 31 31 H 1.09000 * 109.47427 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47134 * 299.99918 * 1 2 3 33 33 H 1.09002 * 109.46839 * 239.99623 * 2 1 3 34 34 H 1.09000 * 109.47246 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.47294 * 299.99894 * 3 2 1 36 36 H 1.09002 * 109.47397 * 59.99964 * 3 2 1 37 37 H 1.08996 * 109.47120 * 304.99439 * 4 2 1 38 38 H 1.08998 * 109.47219 * 184.99793 * 4 2 1 39 39 H 1.08995 * 109.47619 * 304.99945 * 7 5 4 40 40 H 1.09003 * 109.46927 * 65.00477 * 7 5 4 41 41 H 0.96999 * 119.99499 * 0.02562 * 8 7 5 42 42 H 0.97007 * 120.00493 * 180.02562 * 12 11 9 43 43 H 0.97002 * 120.00525 * 95.00495 * 17 5 4 44 44 H 1.07997 * 119.42694 * 359.97438 * 21 20 18 45 45 H 1.07996 * 120.95441 * 0.04262 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6351 -2.1955 1.1880 6 1 0.5562 -2.2707 1.0528 7 6 2.0352 -2.8889 2.4918 8 7 1.7567 -4.3234 2.3876 9 6 2.0347 -5.1531 3.4408 10 1 2.4589 -4.7501 4.3484 11 6 1.7712 -6.5125 3.3417 12 7 1.2546 -7.0038 2.2354 13 14 2.1498 -7.6444 4.7787 14 1 2.7202 -6.8509 5.8969 15 1 0.8996 -8.3068 5.2298 16 1 3.1299 -8.6751 4.3520 17 7 2.3146 -2.8421 0.0627 18 6 1.7813 -2.7779 -1.1735 19 8 0.7367 -2.1831 -1.3547 20 6 2.4662 -3.4304 -2.3081 21 6 3.6707 -4.1175 -2.1078 22 7 4.2927 -4.7024 -3.1047 23 6 3.8144 -4.6712 -4.3423 24 7 4.2531 -5.1855 -5.5352 25 1 5.0599 -5.7043 -5.6795 26 7 3.3114 -4.8175 -6.5065 27 7 2.3708 -4.1337 -5.9557 28 6 2.6091 -4.0029 -4.6299 29 6 1.9207 -3.3690 -3.5899 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8932 -0.5139 -0.8900 34 1 3.1300 1.4423 -0.0005 35 1 1.6767 1.9562 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6054 -0.2618 2.1369 38 1 3.1262 -0.6444 1.2952 39 1 3.0995 -2.7376 2.6721 40 1 1.4632 -2.4668 3.3181 41 1 1.3753 -4.6853 1.5724 42 1 1.0701 -7.9536 2.1662 43 1 3.1482 -3.3166 0.2071 44 1 4.0953 -4.1660 -1.1159 45 1 0.9941 -2.8460 -3.7747 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319619085.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:59 Heat of formation + Delta-G solvation = 93.752288 kcal Electronic energy + Delta-G solvation = -28668.182074 eV Core-core repulsion = 24723.116635 eV Total energy + Delta-G solvation = -3945.065438 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.60869 -40.29400 -38.59976 -36.74413 -35.03040 -34.21928 -33.61352 -31.94121 -31.61441 -30.58335 -29.05081 -26.92118 -25.63629 -25.16412 -24.59363 -22.95177 -22.86961 -21.35814 -20.50597 -19.74365 -18.94049 -18.64591 -17.36249 -16.90911 -16.66002 -16.36602 -15.78119 -15.55527 -14.77909 -14.31404 -14.19698 -13.90416 -13.77304 -13.58803 -13.39876 -13.13748 -13.05929 -12.92010 -12.81474 -12.24991 -12.20931 -12.06817 -11.98584 -11.75595 -11.54974 -11.10295 -11.01809 -10.87426 -10.58941 -10.32017 -10.26569 -10.18030 -10.02372 -9.78085 -9.59067 -9.57515 -9.27885 -8.98063 -8.73236 -7.02328 -5.83883 -3.13838 -0.04429 0.42500 1.73363 1.81080 2.74016 3.11759 3.38678 3.44841 3.46946 3.55876 3.63702 3.99177 4.02607 4.40083 4.48779 4.51350 4.79723 4.92475 5.07837 5.13318 5.14547 5.43564 5.47886 5.52378 5.58357 5.62809 5.67711 5.83442 5.87209 5.92751 5.99737 6.06670 6.08784 6.14413 6.24606 6.38244 6.38743 6.43010 6.59557 6.62716 6.79322 6.84139 7.22434 7.48668 7.63943 7.67901 8.32744 8.34331 9.46215 10.01098 10.36282 11.38226 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.008137 B = 0.004099 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3440.127900 B = 6828.503732 C = 9611.048597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.093 4.093 3 C -0.147 4.147 4 C -0.123 4.123 5 C 0.137 3.863 6 H 0.095 0.905 7 C 0.143 3.857 8 N -0.732 5.732 9 C -0.243 4.243 10 H 0.071 0.929 11 C -0.010 4.010 12 N -0.930 5.930 13 Si 0.905 3.095 14 H -0.280 1.280 15 H -0.292 1.292 16 H -0.292 1.292 17 N -0.701 5.701 18 C 0.568 3.432 19 O -0.525 6.525 20 C -0.199 4.199 21 C 0.220 3.780 22 N -0.488 5.488 23 C 0.294 3.706 24 N -0.484 5.484 25 H 0.453 0.547 26 N 0.014 4.986 27 N -0.192 5.192 28 C -0.076 4.076 29 C 0.082 3.918 30 H 0.043 0.957 31 H 0.076 0.924 32 H 0.038 0.962 33 H 0.074 0.926 34 H 0.047 0.953 35 H 0.048 0.952 36 H 0.050 0.950 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.025 0.975 40 H 0.035 0.965 41 H 0.386 0.614 42 H 0.255 0.745 43 H 0.402 0.598 44 H 0.181 0.819 45 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.097 11.314 -11.249 17.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.112 4.112 3 C -0.204 4.204 4 C -0.162 4.162 5 C 0.033 3.967 6 H 0.113 0.887 7 C 0.015 3.985 8 N -0.377 5.377 9 C -0.374 4.374 10 H 0.089 0.911 11 C -0.206 4.206 12 N -0.578 5.578 13 Si 0.737 3.263 14 H -0.205 1.205 15 H -0.219 1.219 16 H -0.219 1.219 17 N -0.352 5.352 18 C 0.353 3.647 19 O -0.403 6.403 20 C -0.208 4.208 21 C 0.047 3.953 22 N -0.202 5.202 23 C 0.049 3.951 24 N -0.210 5.210 25 H 0.302 0.698 26 N 0.031 4.969 27 N -0.073 5.073 28 C -0.202 4.202 29 C 0.051 3.949 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.057 0.943 33 H 0.093 0.907 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.043 0.957 40 H 0.052 0.948 41 H 0.220 0.780 42 H 0.065 0.935 43 H 0.238 0.762 44 H 0.198 0.802 45 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 5.757 11.168 -12.621 17.809 hybrid contribution 0.640 -1.136 1.368 1.890 sum 6.397 10.032 -11.253 16.377 Atomic orbital electron populations 1.21839 0.94874 1.03124 0.99765 1.21146 0.96638 0.94860 0.98514 1.21868 1.00323 0.97007 1.01193 1.22031 1.00968 0.94649 0.98509 1.21449 0.98586 0.91075 0.85638 0.88745 1.20983 0.97975 0.86483 0.93061 1.42354 1.76696 1.00890 1.17718 1.19242 1.35026 0.88871 0.94296 0.91072 1.24732 1.01592 0.96946 0.97352 1.69663 1.49409 1.12741 1.25982 0.86150 0.77473 0.80969 0.81753 1.20529 1.21871 1.21879 1.45871 1.27194 1.55126 1.06996 1.17598 0.84760 0.79876 0.82440 1.90794 1.22441 1.42843 1.84227 1.20873 0.98908 1.05962 0.95056 1.23186 0.89040 0.86127 0.96942 1.66714 1.34714 1.22228 0.96547 1.19617 0.92220 0.94725 0.88530 1.47505 1.23928 1.45706 1.03826 0.69845 1.81712 0.94269 1.10228 1.10735 1.74875 1.16728 1.09959 1.05752 1.20396 0.98397 1.08601 0.92779 1.21062 0.97088 0.88872 0.87913 0.93792 0.90485 0.94251 0.90747 0.93340 0.93246 0.93090 0.90968 0.91843 0.95705 0.94755 0.78006 0.93517 0.76191 0.80189 0.81636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.03 37.15 0.30 -1.50 16 2 C -0.09 -1.12 2.38 -90.63 -0.22 -1.34 16 3 C -0.15 -1.53 9.19 37.15 0.34 -1.19 16 4 C -0.12 -1.47 4.36 -26.73 -0.12 -1.58 16 5 C 0.14 1.97 2.33 -67.93 -0.16 1.81 16 6 H 0.09 1.56 5.92 -51.93 -0.31 1.25 16 7 C 0.14 2.50 5.82 -4.04 -0.02 2.47 16 8 N -0.73 -16.74 5.43 -59.91 -0.33 -17.06 16 9 C -0.24 -6.36 9.99 -15.06 -0.15 -6.51 16 10 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 11 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 12 N -0.93 -26.92 13.06 55.49 0.72 -26.20 16 13 Si 0.91 21.56 29.55 -169.99 -5.02 16.54 16 14 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 15 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 16 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 17 N -0.70 -9.34 4.42 -54.79 -0.24 -9.58 16 18 C 0.57 7.75 6.33 -12.38 -0.08 7.68 16 19 O -0.53 -8.14 11.34 5.31 0.06 -8.08 16 20 C -0.20 -2.43 5.88 -104.87 -0.62 -3.04 16 21 C 0.22 2.53 10.69 -17.09 -0.18 2.34 16 22 N -0.49 -6.00 10.37 -12.04 -0.12 -6.12 16 23 C 0.29 3.60 8.49 -155.93 -1.32 2.27 16 24 N -0.48 -4.88 7.52 31.15 0.23 -4.64 16 25 H 0.45 2.94 8.96 -182.52 -1.64 1.31 16 26 N 0.01 0.16 13.82 60.35 0.83 0.99 16 27 N -0.19 -2.52 12.40 32.17 0.40 -2.12 16 28 C -0.08 -0.98 7.27 -84.74 -0.62 -1.59 16 29 C 0.08 0.99 9.75 -38.51 -0.38 0.61 16 30 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.08 1.15 4.75 -51.93 -0.25 0.91 16 32 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.99 5.19 -51.93 -0.27 0.72 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.39 9.43 7.33 -40.82 -0.30 9.14 16 42 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 43 H 0.40 4.94 6.64 -40.82 -0.27 4.66 16 44 H 0.18 1.70 6.39 -52.49 -0.34 1.36 16 45 H 0.17 1.85 7.71 -52.49 -0.40 1.44 16 LS Contribution 367.59 15.07 5.54 5.54 Total: -1.00 -31.28 367.59 -8.36 -39.64 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: -7.12 Total: 11.02 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -3.31 Total: 0.07 kcal Atomic # 7 Polarization: -66.23 SS G_CDS: 1.50 Total: -64.73 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: 0.06 Total: -8.08 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.28 -8.36 -39.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319619085.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.393 kcal (2) G-P(sol) polarization free energy of solvation -31.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds