Wall clock time and date at job start Tue Mar 31 2020 18:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52990 * 109.47472 * 2 1 4 4 C 1.53001 * 109.47000 * 120.00168 * 2 1 3 5 5 C 1.53005 * 109.47448 * 64.99583 * 4 2 1 6 6 H 1.08995 * 109.47061 * 305.00289 * 5 4 2 7 7 C 1.52994 * 109.47194 * 184.99753 * 5 4 2 8 8 N 1.46503 * 109.47152 * 184.99722 * 7 5 4 9 9 C 1.36931 * 119.99947 * 180.02562 * 8 7 5 10 10 H 1.07992 * 120.00612 * 0.02562 * 9 8 7 11 11 C 1.38818 * 119.99553 * 180.02562 * 9 8 7 12 12 N 1.31609 * 120.00257 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99846 * 180.02562 * 11 9 8 14 14 H 1.48508 * 109.47051 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.47251 * 119.99763 * 13 11 9 16 16 H 1.48497 * 109.47199 * 240.00110 * 13 11 9 17 17 N 1.46502 * 109.46706 * 65.00122 * 5 4 2 18 18 C 1.34781 * 119.99899 * 274.99985 * 17 5 4 19 19 O 1.21563 * 119.99892 * 0.02562 * 18 17 5 20 20 C 1.47725 * 119.99641 * 180.02562 * 18 17 5 21 21 C 1.40111 * 120.35433 * 359.97438 * 20 18 17 22 22 N 1.31259 * 121.14814 * 180.02562 * 21 20 18 23 23 C 1.32719 * 121.80447 * 0.02562 * 22 21 20 24 24 N 1.37110 * 133.40651 * 179.97438 * 23 22 21 25 25 H 0.97006 * 126.59146 * 0.03152 * 24 23 22 26 26 N 1.40192 * 106.82210 * 180.02562 * 24 23 22 27 27 N 1.28673 * 109.50657 * 359.97438 * 26 24 23 28 28 C 1.35335 * 109.99789 * 359.97438 * 27 26 24 29 29 C 1.39433 * 120.34541 * 179.97438 * 20 18 17 30 30 H 1.09000 * 109.47513 * 59.99871 * 1 2 3 31 31 H 1.09000 * 109.47427 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47134 * 299.99918 * 1 2 3 33 33 H 1.09002 * 109.46839 * 239.99623 * 2 1 3 34 34 H 1.09000 * 109.47246 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.47294 * 299.99894 * 3 2 1 36 36 H 1.09002 * 109.47397 * 59.99964 * 3 2 1 37 37 H 1.08996 * 109.47120 * 304.99439 * 4 2 1 38 38 H 1.08998 * 109.47219 * 184.99793 * 4 2 1 39 39 H 1.08995 * 109.47619 * 304.99945 * 7 5 4 40 40 H 1.09003 * 109.46927 * 65.00477 * 7 5 4 41 41 H 0.96999 * 119.99499 * 0.02562 * 8 7 5 42 42 H 0.97007 * 120.00493 * 180.02562 * 12 11 9 43 43 H 0.97002 * 120.00525 * 95.00495 * 17 5 4 44 44 H 1.07997 * 119.42694 * 359.97438 * 21 20 18 45 45 H 1.07996 * 120.95441 * 0.04262 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6351 -2.1955 1.1880 6 1 0.5562 -2.2707 1.0528 7 6 2.0352 -2.8889 2.4918 8 7 1.7567 -4.3234 2.3876 9 6 2.0347 -5.1531 3.4408 10 1 2.4589 -4.7501 4.3484 11 6 1.7712 -6.5125 3.3417 12 7 1.2546 -7.0038 2.2354 13 14 2.1498 -7.6444 4.7787 14 1 2.7202 -6.8509 5.8969 15 1 0.8996 -8.3068 5.2298 16 1 3.1299 -8.6751 4.3520 17 7 2.3146 -2.8421 0.0627 18 6 1.7813 -2.7779 -1.1735 19 8 0.7367 -2.1831 -1.3547 20 6 2.4662 -3.4304 -2.3081 21 6 3.6707 -4.1175 -2.1078 22 7 4.2927 -4.7024 -3.1047 23 6 3.8144 -4.6712 -4.3423 24 7 4.2531 -5.1855 -5.5352 25 1 5.0599 -5.7043 -5.6795 26 7 3.3114 -4.8175 -6.5065 27 7 2.3708 -4.1337 -5.9557 28 6 2.6091 -4.0029 -4.6299 29 6 1.9207 -3.3690 -3.5899 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8932 -0.5139 -0.8900 34 1 3.1300 1.4423 -0.0005 35 1 1.6767 1.9562 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6054 -0.2618 2.1369 38 1 3.1262 -0.6444 1.2952 39 1 3.0995 -2.7376 2.6721 40 1 1.4632 -2.4668 3.3181 41 1 1.3753 -4.6853 1.5724 42 1 1.0701 -7.9536 2.1662 43 1 3.1482 -3.3166 0.2071 44 1 4.0953 -4.1660 -1.1159 45 1 0.9941 -2.8460 -3.7747 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319619085.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:57 Heat of formation + Delta-G solvation = 72.087476 kcal Electronic energy + Delta-G solvation = -28669.121530 eV Core-core repulsion = 24723.116635 eV Total energy + Delta-G solvation = -3946.004895 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -43.55003 -41.37714 -39.59020 -37.91544 -36.38656 -35.16289 -35.05641 -33.16503 -32.84716 -31.85294 -30.31868 -27.87421 -27.11571 -26.15893 -25.60679 -24.53207 -23.87420 -22.56603 -21.65159 -20.74561 -19.87696 -19.70474 -19.10206 -17.98514 -17.72743 -17.32070 -16.89779 -16.78914 -16.39486 -15.53396 -15.35652 -15.16283 -14.95611 -14.82479 -14.44805 -14.35267 -14.32386 -14.08551 -13.78184 -13.58239 -13.23662 -13.11958 -12.96512 -12.90045 -12.80517 -12.68991 -12.47245 -12.25920 -12.01148 -11.83689 -11.58036 -11.31865 -11.21871 -11.17057 -10.92861 -10.61979 -10.53036 -10.25705 -9.84872 -8.94057 -7.89846 -5.17612 -0.98346 -0.54757 0.85264 0.87650 1.50781 1.52661 1.61143 1.70459 2.05974 2.55338 2.59865 2.70777 3.04532 3.08727 3.44788 3.46294 3.57435 3.70135 3.84681 4.06411 4.15287 4.17810 4.32820 4.45148 4.48930 4.52254 4.67530 4.75345 4.89051 4.94017 4.96836 4.98768 5.01836 5.09295 5.18004 5.25159 5.31940 5.47062 5.58085 5.63623 5.65563 5.66137 5.74259 6.29094 6.31421 6.54600 6.60467 7.25320 7.40037 8.14835 8.37714 9.32999 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.008137 B = 0.004099 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3440.127900 B = 6828.503732 C = 9611.048597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.090 4.090 3 C -0.142 4.142 4 C -0.114 4.114 5 C 0.148 3.852 6 H 0.071 0.929 7 C 0.143 3.857 8 N -0.742 5.742 9 C -0.236 4.236 10 H 0.079 0.921 11 C -0.070 4.070 12 N -0.966 5.966 13 Si 0.964 3.036 14 H -0.265 1.265 15 H -0.301 1.301 16 H -0.296 1.296 17 N -0.698 5.698 18 C 0.569 3.431 19 O -0.546 6.546 20 C -0.200 4.200 21 C 0.224 3.776 22 N -0.494 5.494 23 C 0.286 3.714 24 N -0.465 5.465 25 H 0.469 0.531 26 N 0.013 4.987 27 N -0.210 5.210 28 C -0.088 4.088 29 C 0.083 3.917 30 H 0.040 0.960 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.049 0.951 36 H 0.058 0.942 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.043 0.957 40 H 0.036 0.964 41 H 0.376 0.624 42 H 0.248 0.752 43 H 0.408 0.592 44 H 0.200 0.800 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.609 12.362 -10.566 17.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.109 4.109 3 C -0.199 4.199 4 C -0.153 4.153 5 C 0.043 3.957 6 H 0.089 0.911 7 C 0.017 3.983 8 N -0.385 5.385 9 C -0.368 4.368 10 H 0.097 0.903 11 C -0.263 4.263 12 N -0.617 5.617 13 Si 0.795 3.205 14 H -0.189 1.189 15 H -0.229 1.229 16 H -0.223 1.223 17 N -0.349 5.349 18 C 0.356 3.644 19 O -0.425 6.425 20 C -0.209 4.209 21 C 0.050 3.950 22 N -0.208 5.208 23 C 0.041 3.959 24 N -0.193 5.193 25 H 0.320 0.680 26 N 0.030 4.970 27 N -0.091 5.091 28 C -0.213 4.213 29 C 0.052 3.948 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.061 0.939 40 H 0.054 0.946 41 H 0.208 0.792 42 H 0.057 0.943 43 H 0.245 0.755 44 H 0.217 0.783 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 7.314 12.249 -11.930 18.598 hybrid contribution 0.171 -1.399 1.140 1.813 sum 7.485 10.851 -10.790 17.035 Atomic orbital electron populations 1.21780 0.95769 1.01615 1.00059 1.21088 0.95819 0.96025 0.97949 1.21814 1.00908 0.95546 1.01656 1.21970 1.01977 0.92474 0.98858 1.21230 0.97375 0.92501 0.84560 0.91051 1.21144 0.98796 0.83708 0.94701 1.42521 1.76472 1.02905 1.16586 1.19635 1.32913 0.89290 0.94987 0.90344 1.25423 1.02786 0.98547 0.99512 1.69808 1.51647 1.12388 1.27890 0.85202 0.76585 0.79119 0.79615 1.18907 1.22884 1.22325 1.45791 1.27272 1.55135 1.06681 1.17733 0.84462 0.79530 0.82715 1.90794 1.23367 1.43783 1.84545 1.20730 0.99280 1.06408 0.94497 1.23474 0.88596 0.85319 0.97567 1.66787 1.34842 1.22545 0.96600 1.19766 0.92258 0.94883 0.88985 1.47496 1.24003 1.44959 1.02858 0.67973 1.81655 0.94346 1.09961 1.10999 1.74872 1.17417 1.10813 1.06003 1.20521 0.98871 1.09083 0.92844 1.21135 0.97184 0.88623 0.87880 0.94035 0.92859 0.93368 0.91980 0.92361 0.93163 0.92298 0.90078 0.90226 0.93914 0.94632 0.79211 0.94338 0.75471 0.78326 0.81235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 8.03 71.98 0.58 -2.84 16 2 C -0.09 -2.04 2.38 -10.80 -0.03 -2.07 16 3 C -0.14 -2.61 9.19 71.98 0.66 -1.95 16 4 C -0.11 -2.48 4.36 30.60 0.13 -2.35 16 5 C 0.15 4.11 2.33 44.99 0.10 4.22 16 6 H 0.07 2.37 5.92 -2.39 -0.01 2.35 16 7 C 0.14 4.77 5.82 86.38 0.50 5.27 16 8 N -0.74 -33.39 5.43 -343.46 -1.87 -35.26 16 9 C -0.24 -12.09 9.99 84.04 0.84 -11.26 16 10 H 0.08 3.84 7.83 -2.91 -0.02 3.82 16 11 C -0.07 -3.80 5.50 84.87 0.47 -3.34 16 12 N -0.97 -56.50 13.06 21.65 0.28 -56.22 16 13 Si 0.96 44.14 29.55 68.60 2.03 46.17 16 14 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 15 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 16 H -0.30 -13.61 7.11 99.48 0.71 -12.91 16 17 N -0.70 -17.98 4.42 -445.52 -1.97 -19.95 16 18 C 0.57 15.39 6.33 86.75 0.55 15.94 16 19 O -0.55 -17.08 11.34 -3.91 -0.04 -17.12 16 20 C -0.20 -4.79 5.88 -20.03 -0.12 -4.91 16 21 C 0.22 4.89 10.69 85.23 0.91 5.81 16 22 N -0.49 -11.56 10.37 -191.99 -1.99 -13.55 16 23 C 0.29 6.74 8.49 134.01 1.14 7.88 16 24 N -0.47 -8.82 7.52 -55.38 -0.42 -9.23 16 25 H 0.47 5.37 8.96 -213.25 -1.91 3.46 16 26 N 0.01 0.31 13.82 37.02 0.51 0.82 16 27 N -0.21 -5.44 12.40 -52.14 -0.65 -6.09 16 28 C -0.09 -2.21 7.27 39.63 0.29 -1.92 16 29 C 0.08 1.99 9.75 22.96 0.22 2.21 16 30 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.05 1.61 4.75 -2.39 -0.01 1.60 16 32 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.06 1.58 5.19 -2.39 -0.01 1.57 16 34 H 0.06 0.96 8.14 -2.39 -0.02 0.95 16 35 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.38 18.41 7.33 -92.71 -0.68 17.73 16 42 H 0.25 14.26 8.31 -92.70 -0.77 13.49 16 43 H 0.41 9.46 6.64 -92.71 -0.62 8.85 16 44 H 0.20 3.44 6.39 -2.91 -0.02 3.42 16 45 H 0.17 3.85 7.71 -2.91 -0.02 3.83 16 Total: -1.00 -66.01 367.59 0.01 -66.00 By element: Atomic # 1 Polarization: 35.88 SS G_CDS: -2.13 Total: 33.74 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: 6.25 Total: 10.69 kcal Atomic # 7 Polarization: -133.39 SS G_CDS: -6.10 Total: -139.48 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -0.04 Total: -17.12 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -66.01 0.01 -66.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319619085.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.088 kcal (2) G-P(sol) polarization free energy of solvation -66.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds