Wall clock time and date at job start Tue Mar 31 2020 18:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46797 * 2 1 4 4 C 1.52996 * 109.47254 * 120.00154 * 2 1 3 5 5 C 1.52996 * 109.47410 * 66.19330 * 4 2 1 6 6 H 1.09000 * 109.47186 * 304.10108 * 5 4 2 7 7 C 1.53005 * 109.46884 * 64.09844 * 5 4 2 8 8 N 1.46495 * 109.47172 * 174.99732 * 7 5 4 9 9 C 1.36941 * 119.99969 * 179.97438 * 8 7 5 10 10 H 1.08001 * 119.99702 * 0.02562 * 9 8 7 11 11 C 1.38815 * 119.99686 * 180.02562 * 9 8 7 12 12 N 1.31609 * 120.00023 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99616 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47180 * 59.99592 * 13 11 9 15 15 H 1.48499 * 109.46953 * 179.97438 * 13 11 9 16 16 H 1.48509 * 109.46863 * 299.99510 * 13 11 9 17 17 N 1.46497 * 109.47180 * 184.09533 * 5 4 2 18 18 C 1.34779 * 119.99450 * 88.30032 * 17 5 4 19 19 O 1.21562 * 120.00600 * 354.85546 * 18 17 5 20 20 C 1.47729 * 119.99812 * 175.13531 * 18 17 5 21 21 C 1.40120 * 120.35028 * 359.72326 * 20 18 17 22 22 N 1.31251 * 121.14977 * 179.97438 * 21 20 18 23 23 C 1.32716 * 121.80292 * 359.97438 * 22 21 20 24 24 N 1.37115 * 133.40808 * 179.97438 * 23 22 21 25 25 H 0.96998 * 126.59170 * 0.03002 * 24 23 22 26 26 N 1.40189 * 106.81867 * 180.02562 * 24 23 22 27 27 N 1.28661 * 109.51530 * 0.02562 * 26 24 23 28 28 C 1.35337 * 109.99605 * 359.97438 * 27 26 24 29 29 C 1.39422 * 120.35033 * 179.43868 * 20 18 17 30 30 H 1.09002 * 109.47178 * 183.81042 * 1 2 3 31 31 H 1.09009 * 109.47411 * 303.80908 * 1 2 3 32 32 H 1.09004 * 109.47620 * 63.80926 * 1 2 3 33 33 H 1.09000 * 109.46891 * 240.00394 * 2 1 3 34 34 H 1.09001 * 109.47123 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.47306 * 299.99926 * 3 2 1 36 36 H 1.09000 * 109.47078 * 60.00509 * 3 2 1 37 37 H 1.09009 * 109.47164 * 306.19318 * 4 2 1 38 38 H 1.09001 * 109.46946 * 186.19866 * 4 2 1 39 39 H 1.09001 * 109.46981 * 295.00068 * 7 5 4 40 40 H 1.09006 * 109.47068 * 55.00084 * 7 5 4 41 41 H 0.97003 * 120.00006 * 0.02562 * 8 7 5 42 42 H 0.97003 * 119.99535 * 180.02562 * 12 11 9 43 43 H 0.96995 * 120.00187 * 268.29322 * 17 5 4 44 44 H 1.08005 * 119.42286 * 359.97438 * 21 20 18 45 45 H 1.07994 * 120.95279 * 0.02562 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6611 -2.2016 1.1738 6 1 0.5829 -2.2946 1.0435 7 6 2.3761 -2.8513 -0.0126 8 7 2.1088 -4.2917 -0.0148 9 6 2.6478 -5.0866 -0.9909 10 1 3.2703 -4.6517 -1.7589 11 6 2.3940 -6.4514 -0.9932 12 7 1.6358 -6.9813 -0.0570 13 14 3.1298 -7.5359 -2.3244 14 1 4.6112 -7.4465 -2.2730 15 1 2.7114 -8.9435 -2.1035 16 1 2.6522 -7.0799 -3.6545 17 7 2.0628 -2.8722 2.4128 18 6 1.2194 -2.9082 3.4635 19 8 0.1647 -2.3055 3.4174 20 6 1.5795 -3.6751 4.6737 21 6 2.7932 -4.3725 4.7349 22 7 3.1291 -5.0584 5.8024 23 6 2.3411 -5.1238 6.8683 24 7 2.4481 -5.7526 8.0820 25 1 3.1874 -6.3025 8.3851 26 7 1.2836 -5.4480 8.8007 27 7 0.5230 -4.6944 8.0873 28 6 1.1040 -4.4520 6.8893 29 6 0.7178 -3.7078 5.7693 30 1 -0.3634 -1.0254 0.0683 31 1 -0.3634 0.5719 0.8539 32 1 -0.3634 0.4536 -0.9222 33 1 1.8933 -0.5138 -0.8900 34 1 3.1299 1.4426 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 1.5889 -0.2754 2.1358 38 1 3.1243 -0.6261 1.3063 39 1 2.0112 -2.4126 -0.9413 40 1 3.4494 -2.6812 0.0725 41 1 1.5494 -4.6822 0.6748 42 1 1.4588 -7.9350 -0.0585 43 1 2.9357 -3.2904 2.4770 44 1 3.4641 -4.3451 3.8890 45 1 -0.2224 -3.1767 5.7525 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319619086.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:04 Heat of formation + Delta-G solvation = 87.976836 kcal Electronic energy + Delta-G solvation = -28256.144604 eV Core-core repulsion = 24310.828723 eV Total energy + Delta-G solvation = -3945.315880 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 2.69 seconds Orbital eigenvalues (eV) -42.59199 -40.11786 -38.52312 -37.20563 -34.91413 -34.21453 -33.67849 -31.93620 -31.54029 -30.59998 -28.97950 -27.04581 -25.61905 -25.15803 -24.59794 -22.92342 -22.77906 -21.63958 -20.72996 -19.48837 -18.92266 -18.65682 -17.34065 -16.91751 -16.65159 -16.34167 -15.70054 -15.38032 -14.73799 -14.50274 -14.25147 -14.02580 -13.71290 -13.57449 -13.40173 -13.25796 -13.13643 -12.82442 -12.79781 -12.34835 -12.19428 -12.18848 -11.96657 -11.80122 -11.65227 -11.14731 -10.90444 -10.82358 -10.80383 -10.51253 -10.31721 -10.22720 -10.03563 -9.79205 -9.63717 -9.57125 -9.29259 -8.95667 -8.76325 -7.01211 -5.82865 -3.12827 -0.02732 0.43670 1.74951 1.82808 2.73897 3.10553 3.39759 3.44873 3.45782 3.56353 3.64683 4.00401 4.04091 4.41443 4.50196 4.52762 4.78596 4.96803 5.01114 5.07124 5.10859 5.35983 5.46049 5.49808 5.51808 5.63030 5.71958 5.72905 5.81430 5.87140 5.91666 5.98624 6.07228 6.14465 6.17716 6.31186 6.37004 6.40127 6.47246 6.55035 6.65704 6.83631 7.24215 7.50254 7.63413 7.65362 8.29594 8.34935 9.46976 10.02058 10.37171 11.39150 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.007710 B = 0.003971 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3630.930010 B = 7049.938700 C =10035.796290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.097 4.097 3 C -0.144 4.144 4 C -0.120 4.120 5 C 0.136 3.864 6 H 0.095 0.905 7 C 0.143 3.857 8 N -0.731 5.731 9 C -0.244 4.244 10 H 0.070 0.930 11 C -0.009 4.009 12 N -0.930 5.930 13 Si 0.906 3.094 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 N -0.703 5.703 18 C 0.571 3.429 19 O -0.535 6.535 20 C -0.199 4.199 21 C 0.222 3.778 22 N -0.488 5.488 23 C 0.295 3.705 24 N -0.484 5.484 25 H 0.454 0.546 26 N 0.014 4.986 27 N -0.191 5.191 28 C -0.077 4.077 29 C 0.082 3.918 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.078 0.922 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.038 0.962 40 H 0.024 0.976 41 H 0.385 0.615 42 H 0.256 0.744 43 H 0.402 0.598 44 H 0.182 0.818 45 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.145 10.883 11.008 15.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.116 4.116 3 C -0.202 4.202 4 C -0.159 4.159 5 C 0.032 3.968 6 H 0.113 0.887 7 C 0.015 3.985 8 N -0.376 5.376 9 C -0.375 4.375 10 H 0.088 0.912 11 C -0.206 4.206 12 N -0.578 5.578 13 Si 0.737 3.263 14 H -0.212 1.212 15 H -0.217 1.217 16 H -0.212 1.212 17 N -0.354 5.354 18 C 0.357 3.643 19 O -0.413 6.413 20 C -0.208 4.208 21 C 0.049 3.951 22 N -0.201 5.201 23 C 0.050 3.950 24 N -0.209 5.209 25 H 0.302 0.698 26 N 0.031 4.969 27 N -0.073 5.073 28 C -0.202 4.202 29 C 0.051 3.949 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.055 0.945 40 H 0.042 0.958 41 H 0.219 0.781 42 H 0.066 0.934 43 H 0.238 0.762 44 H 0.199 0.801 45 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 2.435 10.579 12.238 16.359 hybrid contribution 0.966 -1.061 -1.192 1.865 sum 3.401 9.518 11.046 14.972 Atomic orbital electron populations 1.21883 0.95149 1.02421 1.01121 1.21136 0.96128 0.95799 0.98540 1.21825 1.00719 0.96244 1.01390 1.21973 1.00939 0.94606 0.98391 1.21430 1.01467 0.90875 0.83057 0.88732 1.21044 0.96674 0.86552 0.94217 1.42343 1.60844 1.00901 1.33537 1.19151 1.24482 0.89191 1.04714 0.91188 1.24726 1.00306 0.96847 0.98675 1.69644 1.41664 1.11709 1.34813 0.86296 0.78658 0.79860 0.81502 1.21245 1.21738 1.21245 1.45850 1.19256 1.56920 1.13327 1.17624 0.84121 0.80266 0.82339 1.90783 1.24053 1.44756 1.81705 1.20843 0.97775 1.05327 0.96879 1.23184 0.92827 0.85825 0.93266 1.66715 1.33172 1.21405 0.98857 1.19620 0.92629 0.93994 0.88785 1.47499 1.20181 1.42728 1.10542 0.69838 1.81702 0.89288 1.10902 1.15053 1.74870 1.21965 1.08475 1.01985 1.20386 0.95803 1.07701 0.96298 1.21058 0.98305 0.88927 0.86637 0.91968 0.92905 0.93126 0.90344 0.92876 0.92912 0.93004 0.91523 0.91781 0.94474 0.95781 0.78065 0.93420 0.76205 0.80123 0.81659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.05 37.16 0.34 -1.45 16 2 C -0.10 -1.12 2.78 -90.62 -0.25 -1.37 16 3 C -0.14 -1.41 9.19 37.16 0.34 -1.07 16 4 C -0.12 -1.47 4.47 -26.73 -0.12 -1.59 16 5 C 0.14 2.02 2.09 -67.93 -0.14 1.88 16 6 H 0.09 1.62 5.76 -51.93 -0.30 1.32 16 7 C 0.14 2.52 5.45 -4.04 -0.02 2.50 16 8 N -0.73 -16.83 5.43 -59.90 -0.33 -17.15 16 9 C -0.24 -6.39 9.99 -15.06 -0.15 -6.54 16 10 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 11 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 12 N -0.93 -26.99 13.06 55.49 0.72 -26.26 16 13 Si 0.91 21.59 29.55 -169.99 -5.02 16.56 16 14 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 16 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 17 N -0.70 -9.78 4.43 -54.79 -0.24 -10.03 16 18 C 0.57 8.36 7.76 -12.38 -0.10 8.26 16 19 O -0.54 -9.24 16.05 5.31 0.09 -9.15 16 20 C -0.20 -2.56 5.88 -104.87 -0.62 -3.18 16 21 C 0.22 2.65 10.69 -17.09 -0.18 2.47 16 22 N -0.49 -6.18 10.37 -12.03 -0.12 -6.30 16 23 C 0.29 3.70 8.49 -155.93 -1.32 2.38 16 24 N -0.48 -5.00 7.52 31.15 0.23 -4.76 16 25 H 0.45 3.04 8.96 -182.53 -1.64 1.41 16 26 N 0.01 0.16 13.82 60.35 0.83 1.00 16 27 N -0.19 -2.57 12.40 32.17 0.40 -2.17 16 28 C -0.08 -1.01 7.27 -84.73 -0.62 -1.62 16 29 C 0.08 1.03 9.75 -38.52 -0.38 0.66 16 30 H 0.06 0.85 6.36 -51.93 -0.33 0.52 16 31 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.96 6.37 -51.93 -0.33 0.63 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.04 0.67 6.66 -51.93 -0.35 0.32 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.39 9.51 7.33 -40.82 -0.30 9.21 16 42 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 43 H 0.40 5.01 6.69 -40.82 -0.27 4.73 16 44 H 0.18 1.78 6.40 -52.48 -0.34 1.45 16 45 H 0.17 1.94 7.71 -52.49 -0.40 1.53 16 LS Contribution 375.87 15.07 5.66 5.66 Total: -1.00 -31.97 375.87 -8.27 -40.24 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -7.18 Total: 11.38 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -3.32 Total: 0.98 kcal Atomic # 7 Polarization: -67.17 SS G_CDS: 1.50 Total: -65.68 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.09 Total: -9.15 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.97 -8.27 -40.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319619086.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.217 kcal (2) G-P(sol) polarization free energy of solvation -31.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.69 seconds