Wall clock time and date at job start Tue Mar 31 2020 18:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46797 * 2 1 4 4 C 1.52996 * 109.47254 * 120.00154 * 2 1 3 5 5 C 1.52996 * 109.47410 * 66.19330 * 4 2 1 6 6 H 1.09000 * 109.47186 * 304.10108 * 5 4 2 7 7 C 1.53005 * 109.46884 * 64.09844 * 5 4 2 8 8 N 1.46495 * 109.47172 * 174.99732 * 7 5 4 9 9 C 1.36941 * 119.99969 * 179.97438 * 8 7 5 10 10 H 1.08001 * 119.99702 * 0.02562 * 9 8 7 11 11 C 1.38815 * 119.99686 * 180.02562 * 9 8 7 12 12 N 1.31609 * 120.00023 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99616 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47180 * 59.99592 * 13 11 9 15 15 H 1.48499 * 109.46953 * 179.97438 * 13 11 9 16 16 H 1.48509 * 109.46863 * 299.99510 * 13 11 9 17 17 N 1.46497 * 109.47180 * 184.09533 * 5 4 2 18 18 C 1.34779 * 119.99450 * 88.30032 * 17 5 4 19 19 O 1.21562 * 120.00600 * 354.85546 * 18 17 5 20 20 C 1.47729 * 119.99812 * 175.13531 * 18 17 5 21 21 C 1.40120 * 120.35028 * 359.72326 * 20 18 17 22 22 N 1.31251 * 121.14977 * 179.97438 * 21 20 18 23 23 C 1.32716 * 121.80292 * 359.97438 * 22 21 20 24 24 N 1.37115 * 133.40808 * 179.97438 * 23 22 21 25 25 H 0.96998 * 126.59170 * 0.03002 * 24 23 22 26 26 N 1.40189 * 106.81867 * 180.02562 * 24 23 22 27 27 N 1.28661 * 109.51530 * 0.02562 * 26 24 23 28 28 C 1.35337 * 109.99605 * 359.97438 * 27 26 24 29 29 C 1.39422 * 120.35033 * 179.43868 * 20 18 17 30 30 H 1.09002 * 109.47178 * 183.81042 * 1 2 3 31 31 H 1.09009 * 109.47411 * 303.80908 * 1 2 3 32 32 H 1.09004 * 109.47620 * 63.80926 * 1 2 3 33 33 H 1.09000 * 109.46891 * 240.00394 * 2 1 3 34 34 H 1.09001 * 109.47123 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.47306 * 299.99926 * 3 2 1 36 36 H 1.09000 * 109.47078 * 60.00509 * 3 2 1 37 37 H 1.09009 * 109.47164 * 306.19318 * 4 2 1 38 38 H 1.09001 * 109.46946 * 186.19866 * 4 2 1 39 39 H 1.09001 * 109.46981 * 295.00068 * 7 5 4 40 40 H 1.09006 * 109.47068 * 55.00084 * 7 5 4 41 41 H 0.97003 * 120.00006 * 0.02562 * 8 7 5 42 42 H 0.97003 * 119.99535 * 180.02562 * 12 11 9 43 43 H 0.96995 * 120.00187 * 268.29322 * 17 5 4 44 44 H 1.08005 * 119.42286 * 359.97438 * 21 20 18 45 45 H 1.07994 * 120.95279 * 0.02562 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6611 -2.2016 1.1738 6 1 0.5829 -2.2946 1.0435 7 6 2.3761 -2.8513 -0.0126 8 7 2.1088 -4.2917 -0.0148 9 6 2.6478 -5.0866 -0.9909 10 1 3.2703 -4.6517 -1.7589 11 6 2.3940 -6.4514 -0.9932 12 7 1.6358 -6.9813 -0.0570 13 14 3.1298 -7.5359 -2.3244 14 1 4.6112 -7.4465 -2.2730 15 1 2.7114 -8.9435 -2.1035 16 1 2.6522 -7.0799 -3.6545 17 7 2.0628 -2.8722 2.4128 18 6 1.2194 -2.9082 3.4635 19 8 0.1647 -2.3055 3.4174 20 6 1.5795 -3.6751 4.6737 21 6 2.7932 -4.3725 4.7349 22 7 3.1291 -5.0584 5.8024 23 6 2.3411 -5.1238 6.8683 24 7 2.4481 -5.7526 8.0820 25 1 3.1874 -6.3025 8.3851 26 7 1.2836 -5.4480 8.8007 27 7 0.5230 -4.6944 8.0873 28 6 1.1040 -4.4520 6.8893 29 6 0.7178 -3.7078 5.7693 30 1 -0.3634 -1.0254 0.0683 31 1 -0.3634 0.5719 0.8539 32 1 -0.3634 0.4536 -0.9222 33 1 1.8933 -0.5138 -0.8900 34 1 3.1299 1.4426 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 1.5889 -0.2754 2.1358 38 1 3.1243 -0.6261 1.3063 39 1 2.0112 -2.4126 -0.9413 40 1 3.4494 -2.6812 0.0725 41 1 1.5494 -4.6822 0.6748 42 1 1.4588 -7.9350 -0.0585 43 1 2.9357 -3.2904 2.4770 44 1 3.4641 -4.3451 3.8890 45 1 -0.2224 -3.1767 5.7525 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319619086.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:02 Heat of formation + Delta-G solvation = 65.668931 kcal Electronic energy + Delta-G solvation = -28257.111947 eV Core-core repulsion = 24310.828723 eV Total energy + Delta-G solvation = -3946.283224 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -43.56595 -41.26511 -39.57148 -38.37364 -36.29178 -35.20588 -35.16516 -33.12887 -32.86429 -31.91971 -30.22884 -27.94386 -27.14633 -26.19148 -25.64497 -24.44651 -23.89212 -22.86662 -21.86021 -20.54383 -19.90261 -19.76702 -19.05734 -18.10077 -17.75551 -17.31909 -16.90260 -16.73217 -16.12345 -15.81447 -15.42007 -15.21439 -15.04450 -14.92623 -14.52782 -14.40427 -14.19058 -14.11887 -13.83571 -13.68159 -13.32743 -13.18918 -13.08440 -12.88463 -12.73837 -12.69820 -12.57739 -12.22637 -11.98449 -11.84948 -11.73239 -11.53340 -11.38041 -11.20767 -10.89236 -10.70504 -10.54518 -10.33139 -9.93056 -8.93771 -7.89417 -5.17431 -1.00144 -0.58157 0.83783 0.86339 1.52044 1.53348 1.59196 1.63443 1.99370 2.50651 2.60085 2.68226 3.01881 3.07044 3.42000 3.45796 3.54792 3.71153 3.83056 3.98436 4.12210 4.14314 4.25818 4.26872 4.45942 4.50443 4.64605 4.66582 4.83666 4.88216 4.91533 4.99301 5.01887 5.08717 5.12304 5.20184 5.21643 5.42409 5.53429 5.56041 5.58222 5.63075 5.64201 6.27332 6.31298 6.50085 6.54886 7.14663 7.39892 8.14385 8.37452 9.33058 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.007710 B = 0.003971 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3630.930010 B = 7049.938700 C =10035.796290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 C -0.140 4.140 4 C -0.109 4.109 5 C 0.145 3.855 6 H 0.070 0.930 7 C 0.145 3.855 8 N -0.741 5.741 9 C -0.239 4.239 10 H 0.079 0.921 11 C -0.069 4.069 12 N -0.966 5.966 13 Si 0.965 3.035 14 H -0.275 1.275 15 H -0.302 1.302 16 H -0.282 1.282 17 N -0.698 5.698 18 C 0.573 3.427 19 O -0.565 6.565 20 C -0.202 4.202 21 C 0.227 3.773 22 N -0.492 5.492 23 C 0.288 3.712 24 N -0.464 5.464 25 H 0.469 0.531 26 N 0.015 4.985 27 N -0.209 5.209 28 C -0.087 4.087 29 C 0.083 3.917 30 H 0.038 0.962 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.054 0.946 37 H 0.062 0.938 38 H 0.081 0.919 39 H 0.039 0.961 40 H 0.042 0.958 41 H 0.375 0.625 42 H 0.248 0.752 43 H 0.410 0.590 44 H 0.201 0.799 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.839 11.811 10.740 16.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 C -0.197 4.197 4 C -0.148 4.148 5 C 0.041 3.959 6 H 0.088 0.912 7 C 0.019 3.981 8 N -0.385 5.385 9 C -0.371 4.371 10 H 0.097 0.903 11 C -0.262 4.262 12 N -0.617 5.617 13 Si 0.795 3.205 14 H -0.201 1.201 15 H -0.229 1.229 16 H -0.208 1.208 17 N -0.349 5.349 18 C 0.360 3.640 19 O -0.445 6.445 20 C -0.211 4.211 21 C 0.053 3.947 22 N -0.206 5.206 23 C 0.042 3.958 24 N -0.192 5.192 25 H 0.321 0.679 26 N 0.032 4.968 27 N -0.090 5.090 28 C -0.213 4.213 29 C 0.052 3.948 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.100 0.900 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.207 0.793 42 H 0.057 0.943 43 H 0.248 0.752 44 H 0.218 0.782 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 4.182 11.536 11.971 17.143 hybrid contribution 0.440 -1.294 -1.093 1.750 sum 4.622 10.242 10.878 15.639 Atomic orbital electron populations 1.21866 0.95810 1.01044 1.01739 1.21140 0.95571 0.97073 0.97780 1.21779 1.01289 0.94675 1.01964 1.21888 1.01967 0.92306 0.98634 1.21244 0.99689 0.92486 0.82514 0.91230 1.21182 0.97785 0.83730 0.95450 1.42510 1.60425 1.02914 1.32613 1.19561 1.23152 0.89573 1.04781 0.90346 1.25427 1.01587 0.98325 1.00835 1.69800 1.43813 1.11269 1.36823 0.85337 0.78352 0.77548 0.79249 1.20140 1.22893 1.20842 1.45782 1.19517 1.56741 1.12825 1.17808 0.83592 0.79875 0.82768 1.90767 1.25288 1.46142 1.82346 1.20672 0.98430 1.05784 0.96209 1.23461 0.92621 0.85024 0.93584 1.66791 1.33171 1.21669 0.99000 1.19769 0.92526 0.94163 0.89307 1.47492 1.20112 1.42023 1.09607 0.67920 1.81648 0.89605 1.10530 1.15030 1.74872 1.22594 1.09291 1.02272 1.20496 0.96235 1.08150 0.96425 1.21134 0.98434 0.88674 0.86540 0.94253 0.92806 0.92065 0.90885 0.91919 0.92134 0.92697 0.91914 0.89996 0.94290 0.93991 0.79324 0.94330 0.75221 0.78238 0.81272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 9.05 71.98 0.65 -2.81 16 2 C -0.10 -2.08 2.78 -10.80 -0.03 -2.11 16 3 C -0.14 -2.38 9.19 71.98 0.66 -1.72 16 4 C -0.11 -2.50 4.47 30.59 0.14 -2.36 16 5 C 0.15 4.23 2.09 44.99 0.09 4.32 16 6 H 0.07 2.43 5.76 -2.39 -0.01 2.42 16 7 C 0.15 4.92 5.45 86.38 0.47 5.39 16 8 N -0.74 -33.71 5.43 -343.44 -1.87 -35.58 16 9 C -0.24 -12.27 9.99 84.03 0.84 -11.43 16 10 H 0.08 3.83 7.83 -2.91 -0.02 3.81 16 11 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 12 N -0.97 -56.62 13.06 21.65 0.28 -56.34 16 13 Si 0.97 44.15 29.55 68.60 2.03 46.17 16 14 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 15 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 16 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 17 N -0.70 -18.93 4.43 -445.52 -1.97 -20.91 16 18 C 0.57 16.71 7.76 86.75 0.67 17.39 16 19 O -0.57 -19.80 16.05 -3.91 -0.06 -19.86 16 20 C -0.20 -5.11 5.88 -20.03 -0.12 -5.23 16 21 C 0.23 5.16 10.69 85.24 0.91 6.08 16 22 N -0.49 -11.86 10.37 -191.98 -1.99 -13.85 16 23 C 0.29 6.93 8.49 134.01 1.14 8.07 16 24 N -0.46 -8.97 7.52 -55.37 -0.42 -9.39 16 25 H 0.47 5.51 8.96 -213.27 -1.91 3.60 16 26 N 0.02 0.35 13.82 37.02 0.51 0.86 16 27 N -0.21 -5.51 12.40 -52.14 -0.65 -6.16 16 28 C -0.09 -2.26 7.27 39.63 0.29 -1.98 16 29 C 0.08 2.09 9.75 22.96 0.22 2.32 16 30 H 0.04 1.09 6.36 -2.39 -0.02 1.08 16 31 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 32 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.07 1.66 6.37 -2.39 -0.02 1.64 16 34 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 38 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.04 1.35 6.66 -2.39 -0.02 1.33 16 40 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 41 H 0.37 18.59 7.33 -92.71 -0.68 17.91 16 42 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 43 H 0.41 9.67 6.69 -92.71 -0.62 9.05 16 44 H 0.20 3.63 6.40 -2.91 -0.02 3.61 16 45 H 0.17 4.04 7.71 -2.91 -0.02 4.02 16 Total: -1.00 -67.55 375.87 0.13 -67.42 By element: Atomic # 1 Polarization: 37.12 SS G_CDS: -2.14 Total: 34.98 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: 6.41 Total: 12.65 kcal Atomic # 7 Polarization: -135.26 SS G_CDS: -6.10 Total: -141.36 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.06 Total: -19.86 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -67.55 0.13 -67.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319619086.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.089 kcal (2) G-P(sol) polarization free energy of solvation -67.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds