Wall clock time and date at job start Tue Mar 31 2020 18:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47164 * 2 1 4 4 C 1.52996 * 109.47178 * 120.00289 * 2 1 3 5 5 H 1.09000 * 109.47521 * 299.99961 * 4 2 1 6 6 C 1.53003 * 109.47332 * 60.00127 * 4 2 1 7 7 N 1.46501 * 109.47349 * 175.00381 * 6 4 2 8 8 C 1.34775 * 119.99874 * 180.02562 * 7 6 4 9 9 O 1.21569 * 120.00049 * 359.97438 * 8 7 6 10 10 C 1.47726 * 119.99906 * 179.97438 * 8 7 6 11 11 C 1.40119 * 120.34884 * 359.97438 * 10 8 7 12 12 N 1.31262 * 121.14897 * 179.97438 * 11 10 8 13 13 C 1.32716 * 121.79889 * 0.02562 * 12 11 10 14 14 C 1.40783 * 120.68286 * 0.02562 * 13 12 11 15 15 C 1.39425 * 120.35140 * 179.72511 * 10 8 7 16 16 N 1.35330 * 107.75666 * 179.97438 * 14 13 12 17 17 N 1.28663 * 110.00016 * 359.97438 * 16 14 13 18 18 N 1.37114 * 133.40486 * 179.97438 * 13 12 11 19 19 C 1.46504 * 126.59167 * 359.97438 * 18 13 12 20 20 N 1.46505 * 109.47130 * 179.97438 * 4 2 1 21 21 C 1.36931 * 119.99788 * 84.99932 * 20 4 2 22 22 H 1.08002 * 120.00438 * 0.02562 * 21 20 4 23 23 C 1.38817 * 119.99680 * 179.72358 * 21 20 4 24 24 N 1.31614 * 119.99888 * 0.27479 * 23 21 20 25 25 Si 1.86803 * 119.99862 * 180.27671 * 23 21 20 26 26 H 1.48508 * 109.46872 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47141 * 119.99997 * 25 23 21 28 28 H 1.48498 * 109.47018 * 240.00044 * 25 23 21 29 29 H 1.09000 * 109.46863 * 299.99348 * 1 2 3 30 30 H 1.08994 * 109.47323 * 60.00002 * 1 2 3 31 31 H 1.08998 * 109.47238 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47096 * 239.99921 * 2 1 3 33 33 H 1.09003 * 109.47086 * 180.02562 * 3 2 1 34 34 H 1.08994 * 109.46999 * 300.00196 * 3 2 1 35 35 H 1.09000 * 109.46698 * 60.00552 * 3 2 1 36 36 H 1.09009 * 109.46837 * 294.99855 * 6 4 2 37 37 H 1.09000 * 109.47433 * 54.99587 * 6 4 2 38 38 H 0.97000 * 120.00018 * 359.97438 * 7 6 4 39 39 H 1.07999 * 119.42605 * 0.02562 * 11 10 8 40 40 H 1.08002 * 120.95497 * 359.96910 * 15 10 8 41 41 H 1.09003 * 109.46698 * 89.99976 * 19 18 13 42 42 H 1.08998 * 109.47374 * 210.00181 * 19 18 13 43 43 H 1.09003 * 109.46976 * 330.00253 * 19 18 13 44 44 H 0.97000 * 119.99792 * 264.99726 * 20 4 2 45 45 H 0.97005 * 119.99715 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2076 2.1392 6 6 1.5300 -2.1638 1.2491 7 7 2.1141 -2.8884 2.3806 8 6 1.8060 -4.1849 2.5819 9 8 1.0431 -4.7530 1.8249 10 6 2.3954 -4.9156 3.7225 11 6 3.2760 -4.2681 4.5992 12 7 3.8084 -4.9021 5.6179 13 6 3.5406 -6.1783 5.8647 14 6 2.6668 -6.9031 5.0321 15 6 2.0773 -6.2554 3.9410 16 7 2.5833 -8.1631 5.5187 17 7 3.3206 -8.2799 6.5666 18 7 3.9508 -7.0566 6.8344 19 6 4.8720 -6.7720 7.9374 20 7 3.5050 -0.7218 1.2488 21 6 4.1901 0.3528 1.7498 22 1 3.6506 1.2005 2.1454 23 6 5.5783 0.3498 1.7547 24 7 6.2359 -0.6835 1.2730 25 14 6.5130 1.8124 2.4451 26 1 5.5483 2.8366 2.9205 27 1 7.3617 1.3669 3.5792 28 1 7.3717 2.3968 1.3839 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6767 1.9562 0.8900 36 1 0.4436 -2.1651 1.3387 37 1 1.8183 -2.6512 0.3177 38 1 2.7232 -2.4351 2.9844 39 1 3.5204 -3.2291 4.4344 40 1 1.3982 -6.7793 3.2847 41 1 4.3072 -6.4205 8.8009 42 1 5.4132 -7.6802 8.2024 43 1 5.5809 -6.0033 7.6295 44 1 3.9897 -1.4834 0.8938 45 1 7.2059 -0.6854 1.2761 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319926739.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:11 Heat of formation + Delta-G solvation = 98.851121 kcal Electronic energy + Delta-G solvation = -28138.169868 eV Core-core repulsion = 24193.325532 eV Total energy + Delta-G solvation = -3944.844336 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.54201 -39.96496 -38.34360 -37.24720 -35.10674 -34.08385 -33.17959 -32.35779 -31.13065 -30.32778 -28.25978 -27.82564 -26.19294 -25.11811 -24.43396 -23.52456 -21.91932 -21.67702 -20.75080 -19.50678 -18.61333 -18.09270 -17.36588 -16.94775 -16.68672 -16.18562 -15.47971 -15.31858 -14.79662 -14.28281 -14.06577 -13.96578 -13.90561 -13.55879 -13.43267 -13.35606 -13.25862 -13.10048 -12.86274 -12.69655 -12.26185 -12.06993 -11.90853 -11.66522 -11.22456 -11.09206 -11.01023 -10.87886 -10.71844 -10.35995 -10.20394 -10.12671 -9.98337 -9.63746 -9.58426 -9.47699 -9.16198 -8.98827 -8.73126 -7.09928 -5.88181 -3.17809 0.00979 0.46511 1.53587 1.86221 2.76751 3.16072 3.35178 3.42129 3.44259 3.58421 3.59517 3.90281 4.08081 4.34850 4.48036 4.48756 4.74589 4.78335 5.02513 5.11040 5.15847 5.28285 5.32619 5.47564 5.50757 5.58713 5.66128 5.70845 5.83992 5.87873 5.95478 6.12597 6.14188 6.19603 6.33260 6.38770 6.48138 6.57789 6.59178 6.80861 7.02127 7.25385 7.28945 7.56753 7.62038 7.72276 8.28635 8.33193 9.41410 9.95171 10.31117 11.33341 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.011378 B = 0.003283 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.377922 B = 8525.839660 C =10588.936180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.109 4.109 3 C -0.139 4.139 4 C 0.169 3.831 5 H 0.055 0.945 6 C 0.113 3.887 7 N -0.703 5.703 8 C 0.566 3.434 9 O -0.544 6.544 10 C -0.201 4.201 11 C 0.219 3.781 12 N -0.485 5.485 13 C 0.287 3.713 14 C -0.077 4.077 15 C 0.080 3.920 16 N -0.198 5.198 17 N 0.006 4.994 18 N -0.386 5.386 19 C 0.101 3.899 20 N -0.722 5.722 21 C -0.238 4.238 22 H 0.074 0.926 23 C -0.008 4.008 24 N -0.928 5.928 25 Si 0.900 3.100 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.049 0.951 30 H 0.045 0.955 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.031 0.969 35 H 0.040 0.960 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.409 0.591 39 H 0.184 0.816 40 H 0.165 0.835 41 H 0.084 0.916 42 H 0.097 0.903 43 H 0.100 0.900 44 H 0.385 0.615 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.986 -7.547 8.826 13.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.131 4.131 3 C -0.197 4.197 4 C 0.058 3.942 5 H 0.073 0.927 6 C -0.011 4.011 7 N -0.355 5.355 8 C 0.351 3.649 9 O -0.423 6.423 10 C -0.210 4.210 11 C 0.045 3.955 12 N -0.199 5.199 13 C 0.044 3.956 14 C -0.203 4.203 15 C 0.049 3.951 16 N -0.078 5.078 17 N 0.025 4.975 18 N -0.182 5.182 19 C -0.040 4.040 20 N -0.364 5.364 21 C -0.369 4.369 22 H 0.092 0.908 23 C -0.205 4.205 24 N -0.575 5.575 25 Si 0.732 3.268 26 H -0.205 1.205 27 H -0.219 1.219 28 H -0.220 1.220 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.105 0.895 34 H 0.050 0.950 35 H 0.060 0.940 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.247 0.753 39 H 0.201 0.799 40 H 0.182 0.818 41 H 0.102 0.898 42 H 0.116 0.884 43 H 0.118 0.882 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.966 -8.867 9.547 14.775 hybrid contribution 0.907 1.438 -0.198 1.711 sum -6.060 -7.430 9.349 13.391 Atomic orbital electron populations 1.21947 0.96834 1.00995 1.00981 1.21726 0.93554 0.97815 1.00009 1.21819 1.04210 0.94611 0.99029 1.20569 0.86424 0.90985 0.96186 0.92685 1.21827 0.97478 0.93236 0.88559 1.45885 1.48192 1.10312 1.31065 1.17660 0.81296 0.82065 0.83876 1.90775 1.36569 1.67946 1.46971 1.20835 1.04314 0.95414 1.00474 1.23260 0.87091 0.99694 0.85442 1.66700 1.26320 1.05474 1.21373 1.19600 0.94659 0.90783 0.90550 1.20363 1.05864 0.92235 1.01807 1.21038 0.91697 0.91694 0.90704 1.74844 1.13350 1.15878 1.03712 1.81728 1.05011 1.00589 1.10205 1.49960 1.37838 1.07391 1.23036 1.22098 0.91661 1.03937 0.86269 1.42491 0.98711 1.21276 1.73907 1.19231 0.88739 0.96464 1.32499 0.90806 1.24718 0.96480 0.97621 1.01686 1.69664 1.06923 1.29742 1.51200 0.86226 0.80103 0.82194 0.78303 1.20523 1.21915 1.21960 0.93164 0.93558 0.92997 0.91834 0.89486 0.94995 0.94042 0.91160 0.91466 0.75317 0.79907 0.81784 0.89779 0.88399 0.88181 0.78066 0.93501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 8.84 37.16 0.33 -1.61 16 2 C -0.11 -1.72 2.69 -90.62 -0.24 -1.96 16 3 C -0.14 -2.35 8.26 37.16 0.31 -2.04 16 4 C 0.17 2.81 2.18 -67.93 -0.15 2.66 16 5 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 6 C 0.11 1.71 4.73 -4.04 -0.02 1.69 16 7 N -0.70 -10.25 5.34 -61.28 -0.33 -10.58 16 8 C 0.57 8.46 7.77 -12.38 -0.10 8.36 16 9 O -0.54 -9.55 16.39 5.31 0.09 -9.46 16 10 C -0.20 -2.65 5.88 -104.87 -0.62 -3.27 16 11 C 0.22 2.75 10.69 -17.09 -0.18 2.57 16 12 N -0.48 -6.48 10.37 -12.03 -0.12 -6.60 16 13 C 0.29 3.87 8.05 -155.93 -1.26 2.61 16 14 C -0.08 -1.06 7.27 -84.74 -0.62 -1.67 16 15 C 0.08 1.03 9.75 -38.51 -0.38 0.65 16 16 N -0.20 -2.78 12.40 32.17 0.40 -2.38 16 17 N 0.01 0.08 13.71 60.35 0.83 0.90 16 18 N -0.39 -4.51 4.10 -67.18 -0.28 -4.79 16 19 C 0.10 0.71 11.54 59.85 0.69 1.40 16 20 N -0.72 -15.05 4.44 -53.42 -0.24 -15.29 16 21 C -0.24 -5.62 7.57 -15.06 -0.11 -5.74 16 22 H 0.07 1.72 7.40 -52.49 -0.39 1.33 16 23 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 24 N -0.93 -25.39 13.06 55.49 0.72 -24.67 16 25 Si 0.90 20.57 29.55 -169.99 -5.02 15.54 16 26 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 27 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 28 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.63 6.55 -51.93 -0.34 0.29 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.09 1.75 6.01 -51.93 -0.31 1.44 16 34 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.99 6.71 -51.92 -0.35 0.64 16 37 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.41 5.82 6.17 -40.82 -0.25 5.57 16 39 H 0.18 2.04 6.39 -52.49 -0.34 1.71 16 40 H 0.16 1.95 7.71 -52.49 -0.40 1.54 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.39 8.89 7.80 -40.82 -0.32 8.57 16 45 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 375.83 15.07 5.66 5.66 Total: -1.00 -29.77 375.83 -6.78 -36.55 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -6.06 Total: 11.78 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: -2.44 Total: 3.33 kcal Atomic # 7 Polarization: -64.39 SS G_CDS: 0.99 Total: -63.40 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.09 Total: -9.46 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.77 -6.78 -36.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319926739.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.400 kcal (2) G-P(sol) polarization free energy of solvation -29.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds