Wall clock time and date at job start Tue Mar 31 2020 18:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47155 * 2 1 4 4 C 1.52999 * 109.46921 * 120.00171 * 2 1 3 5 5 H 1.09005 * 109.47033 * 184.99953 * 4 2 1 6 6 C 1.52997 * 109.47264 * 64.99875 * 4 2 1 7 7 N 1.46505 * 109.46985 * 184.99674 * 6 4 2 8 8 C 1.34774 * 119.99861 * 180.02562 * 7 6 4 9 9 O 1.21574 * 119.99937 * 0.02562 * 8 7 6 10 10 C 1.47719 * 119.99985 * 180.02562 * 8 7 6 11 11 C 1.40117 * 120.35279 * 0.02562 * 10 8 7 12 12 N 1.31265 * 121.15222 * 179.97438 * 11 10 8 13 13 C 1.32713 * 121.79597 * 0.02562 * 12 11 10 14 14 C 1.40783 * 120.68710 * 0.02562 * 13 12 11 15 15 C 1.39436 * 120.35112 * 179.72268 * 10 8 7 16 16 N 1.35327 * 107.76088 * 180.02562 * 14 13 12 17 17 N 1.28671 * 109.99700 * 359.97438 * 16 14 13 18 18 N 1.37118 * 133.39967 * 180.02562 * 13 12 11 19 19 C 1.46500 * 126.59317 * 359.96008 * 18 13 12 20 20 N 1.46498 * 109.46890 * 304.99875 * 4 2 1 21 21 C 1.36935 * 120.00239 * 275.00034 * 20 4 2 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 4 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 4 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47364 * 179.72253 * 25 23 21 27 27 H 1.48508 * 109.46883 * 299.72375 * 25 23 21 28 28 H 1.48497 * 109.46870 * 59.72186 * 25 23 21 29 29 H 1.08991 * 109.47194 * 300.00042 * 1 2 3 30 30 H 1.08994 * 109.46930 * 60.00317 * 1 2 3 31 31 H 1.09000 * 109.46793 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47080 * 239.99867 * 2 1 3 33 33 H 1.09005 * 109.47235 * 59.99962 * 3 2 1 34 34 H 1.08994 * 109.47808 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.47447 * 300.00428 * 3 2 1 36 36 H 1.08996 * 109.47726 * 304.99907 * 6 4 2 37 37 H 1.09001 * 109.46766 * 65.00647 * 6 4 2 38 38 H 0.96994 * 120.00104 * 0.02562 * 7 6 4 39 39 H 1.07996 * 119.42374 * 359.96895 * 11 10 8 40 40 H 1.08000 * 120.95199 * 0.02562 * 15 10 8 41 41 H 1.09004 * 109.46901 * 89.99614 * 19 18 13 42 42 H 1.08997 * 109.47686 * 210.00096 * 19 18 13 43 43 H 1.09009 * 109.46959 * 330.00455 * 19 18 13 44 44 H 0.97004 * 119.99747 * 95.00774 * 20 4 2 45 45 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1264 -0.6444 1.2952 6 6 1.6352 -2.1955 1.1879 7 7 2.0184 -2.8594 2.4364 8 6 1.7597 -4.1707 2.6093 9 8 1.2087 -4.8028 1.7289 10 6 2.1455 -4.8400 3.8683 11 6 2.7803 -4.1186 4.8880 12 7 3.1295 -4.6974 6.0132 13 6 2.9002 -5.9851 6.2377 14 6 2.2679 -6.7826 5.2650 15 6 1.8761 -6.1950 4.0572 16 7 2.1665 -8.0372 5.7619 17 7 2.6753 -8.0852 6.9428 18 7 3.1556 -6.8168 7.2976 19 6 3.8058 -6.4504 8.5582 20 7 1.4558 -0.1037 2.4423 21 6 2.0441 1.0002 2.9997 22 1 2.9385 1.4157 2.5595 23 6 1.4909 1.5851 4.1305 24 7 0.3978 1.0819 4.6638 25 14 2.2929 3.0913 4.8904 26 1 1.5103 3.5239 6.0760 27 1 3.6786 2.7571 5.3070 28 1 2.3275 4.1903 3.8923 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4426 0.0005 35 1 1.6767 1.9563 -0.8899 36 1 0.5563 -2.2708 1.0527 37 1 2.1409 -2.6765 0.3507 38 1 2.4583 -2.3552 3.1386 39 1 2.9860 -3.0680 4.7457 40 1 1.3841 -6.7756 3.2909 41 1 3.0516 -6.1255 9.2750 42 1 4.3380 -7.3140 8.9570 43 1 4.5116 -5.6389 8.3806 44 1 0.6524 -0.4767 2.8375 45 1 -0.0190 0.3000 4.2690 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319926740.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:16 Heat of formation + Delta-G solvation = 101.353158 kcal Electronic energy + Delta-G solvation = -28291.015939 eV Core-core repulsion = 24346.280100 eV Total energy + Delta-G solvation = -3944.735840 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.58054 -40.03449 -38.41432 -37.40882 -35.14175 -34.19122 -33.27857 -32.40338 -31.15381 -30.01730 -28.17268 -27.76250 -26.47817 -25.12145 -24.43380 -23.43757 -22.25434 -21.71556 -20.82981 -19.25798 -18.53693 -18.08519 -17.49196 -17.16619 -16.72075 -16.27995 -15.55650 -15.33855 -14.72496 -14.53722 -14.19711 -13.98791 -13.77430 -13.72965 -13.53026 -13.42194 -13.38394 -13.19808 -13.08013 -12.73352 -12.26785 -12.01570 -11.94405 -11.41194 -11.21668 -11.14945 -10.95283 -10.82782 -10.62487 -10.26657 -10.15310 -10.07643 -9.84123 -9.66802 -9.51810 -9.26726 -9.20763 -8.99225 -8.81090 -7.15688 -6.17229 -3.19814 -0.03155 0.41420 1.50221 1.82403 2.70719 3.09244 3.46061 3.47762 3.52479 3.54518 3.65702 3.86337 4.03565 4.30518 4.42964 4.57915 4.68822 4.77112 4.98204 5.08117 5.11691 5.23944 5.30092 5.43554 5.46663 5.61059 5.63022 5.71489 5.74880 5.83510 5.97199 6.05385 6.09666 6.24220 6.27978 6.41947 6.50363 6.56665 6.69210 6.75246 6.94167 7.21427 7.24513 7.53050 7.63684 7.73145 8.24929 8.65979 9.09880 9.96843 10.11725 11.29273 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.012142 B = 0.003257 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.583822 B = 8593.617892 C =10477.545948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 C -0.141 4.141 4 C 0.173 3.827 5 H 0.056 0.944 6 C 0.111 3.889 7 N -0.705 5.705 8 C 0.566 3.434 9 O -0.543 6.543 10 C -0.203 4.203 11 C 0.218 3.782 12 N -0.484 5.484 13 C 0.288 3.712 14 C -0.077 4.077 15 C 0.081 3.919 16 N -0.198 5.198 17 N 0.007 4.993 18 N -0.385 5.385 19 C 0.101 3.899 20 N -0.729 5.729 21 C -0.329 4.329 22 H 0.068 0.932 23 C -0.040 4.040 24 N -0.940 5.940 25 Si 1.073 2.927 26 H -0.287 1.287 27 H -0.296 1.296 28 H -0.296 1.296 29 H 0.067 0.933 30 H 0.039 0.961 31 H 0.043 0.957 32 H 0.050 0.950 33 H 0.086 0.914 34 H 0.040 0.960 35 H 0.032 0.968 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.409 0.591 39 H 0.183 0.817 40 H 0.165 0.835 41 H 0.085 0.915 42 H 0.098 0.902 43 H 0.099 0.901 44 H 0.368 0.632 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.793 -11.512 0.970 13.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 C -0.198 4.198 4 C 0.062 3.938 5 H 0.074 0.926 6 C -0.013 4.013 7 N -0.356 5.356 8 C 0.351 3.649 9 O -0.421 6.421 10 C -0.212 4.212 11 C 0.044 3.956 12 N -0.197 5.197 13 C 0.044 3.956 14 C -0.202 4.202 15 C 0.050 3.950 16 N -0.078 5.078 17 N 0.026 4.974 18 N -0.182 5.182 19 C -0.040 4.040 20 N -0.373 5.373 21 C -0.460 4.460 22 H 0.086 0.914 23 C -0.238 4.238 24 N -0.585 5.585 25 Si 0.905 3.095 26 H -0.212 1.212 27 H -0.223 1.223 28 H -0.223 1.223 29 H 0.086 0.914 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.105 0.895 34 H 0.059 0.941 35 H 0.052 0.948 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.246 0.754 39 H 0.200 0.800 40 H 0.182 0.818 41 H 0.104 0.896 42 H 0.116 0.884 43 H 0.118 0.882 44 H 0.202 0.798 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.794 -11.757 2.794 13.863 hybrid contribution -0.109 -0.282 -1.545 1.574 sum 6.685 -12.038 1.249 13.826 Atomic orbital electron populations 1.21766 0.95762 1.00567 1.01659 1.21606 0.96088 0.97327 0.97853 1.21833 0.99594 0.96234 1.02187 1.20500 0.97027 0.88052 0.88204 0.92598 1.21841 1.00839 0.93573 0.85092 1.45895 1.60542 1.08797 1.20414 1.17679 0.79224 0.82274 0.85720 1.90780 1.43031 1.65026 1.43284 1.20820 1.07439 0.94955 0.97984 1.23232 0.87369 0.99898 0.85090 1.66697 1.22608 1.07054 1.23382 1.19598 0.96385 0.90793 0.88790 1.20361 1.09773 0.91589 0.98524 1.21039 0.88624 0.92635 0.92745 1.74853 1.12874 1.17489 1.02552 1.81736 1.09655 0.98401 1.07623 1.49973 1.47462 1.06490 1.14230 1.22108 0.98173 1.03009 0.80701 1.42445 1.31575 1.33918 1.29323 1.19976 1.09511 1.06156 1.10325 0.91444 1.25640 0.98258 1.04088 0.95822 1.70903 1.20118 1.24762 1.42706 0.83324 0.74733 0.75245 0.76247 1.21215 1.22299 1.22338 0.91359 0.94224 0.93763 0.93123 0.89495 0.94119 0.94848 0.91125 0.91406 0.75390 0.80036 0.81771 0.89645 0.88384 0.88213 0.79810 0.93336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 8.74 37.16 0.32 -1.94 16 2 C -0.11 -1.70 2.74 -90.62 -0.25 -1.95 16 3 C -0.14 -2.39 8.46 37.15 0.31 -2.08 16 4 C 0.17 2.88 2.29 -67.93 -0.16 2.73 16 5 H 0.06 0.96 8.08 -51.93 -0.42 0.54 16 6 C 0.11 1.67 5.10 -4.04 -0.02 1.65 16 7 N -0.70 -10.19 5.34 -61.29 -0.33 -10.52 16 8 C 0.57 8.39 7.77 -12.39 -0.10 8.30 16 9 O -0.54 -9.48 16.39 5.30 0.09 -9.39 16 10 C -0.20 -2.65 5.88 -104.87 -0.62 -3.27 16 11 C 0.22 2.73 10.69 -17.09 -0.18 2.54 16 12 N -0.48 -6.44 10.37 -12.03 -0.12 -6.56 16 13 C 0.29 3.85 8.05 -155.93 -1.26 2.59 16 14 C -0.08 -1.05 7.27 -84.74 -0.62 -1.66 16 15 C 0.08 1.03 9.75 -38.51 -0.38 0.66 16 16 N -0.20 -2.76 12.40 32.17 0.40 -2.36 16 17 N 0.01 0.09 13.71 60.35 0.83 0.92 16 18 N -0.39 -4.47 4.10 -67.18 -0.28 -4.75 16 19 C 0.10 0.70 11.54 59.85 0.69 1.39 16 20 N -0.73 -14.90 3.53 -53.43 -0.19 -15.08 16 21 C -0.33 -7.78 7.75 -15.06 -0.12 -7.90 16 22 H 0.07 1.60 7.32 -52.48 -0.38 1.21 16 23 C -0.04 -1.02 5.50 -17.43 -0.10 -1.12 16 24 N -0.94 -26.30 13.70 55.49 0.76 -25.54 16 25 Si 1.07 23.80 29.92 -169.99 -5.09 18.72 16 26 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.30 -6.27 7.11 56.52 0.40 -5.86 16 28 H -0.30 -6.37 7.11 56.52 0.40 -5.97 16 29 H 0.07 1.30 7.47 -51.93 -0.39 0.91 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.04 0.67 6.46 -51.93 -0.34 0.33 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 1.76 5.99 -51.93 -0.31 1.45 16 34 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.07 1.14 6.34 -51.93 -0.33 0.81 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.41 5.78 6.17 -40.82 -0.25 5.53 16 39 H 0.18 2.03 6.39 -52.49 -0.34 1.69 16 40 H 0.16 1.94 7.71 -52.49 -0.40 1.53 16 41 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.10 0.62 8.14 -51.92 -0.42 0.20 16 44 H 0.37 8.10 6.63 -40.82 -0.27 7.83 16 45 H 0.26 7.04 6.77 -40.82 -0.28 6.77 16 LS Contribution 372.81 15.07 5.62 5.62 Total: -1.00 -30.23 372.81 -6.65 -36.87 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -5.89 Total: 12.14 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -2.45 Total: -0.06 kcal Atomic # 7 Polarization: -64.97 SS G_CDS: 1.07 Total: -63.90 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.09 Total: -9.39 kcal Atomic # 14 Polarization: 23.80 SS G_CDS: -5.09 Total: 18.72 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.23 -6.65 -36.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319926740.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.228 kcal (2) G-P(sol) polarization free energy of solvation -30.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds