Wall clock time and date at job start Tue Mar 31 2020 18:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47155 * 2 1 4 4 C 1.52999 * 109.46921 * 120.00171 * 2 1 3 5 5 H 1.09005 * 109.47033 * 184.99953 * 4 2 1 6 6 C 1.52997 * 109.47264 * 64.99875 * 4 2 1 7 7 N 1.46505 * 109.46985 * 184.99674 * 6 4 2 8 8 C 1.34774 * 119.99861 * 180.02562 * 7 6 4 9 9 O 1.21574 * 119.99937 * 0.02562 * 8 7 6 10 10 C 1.47719 * 119.99985 * 180.02562 * 8 7 6 11 11 C 1.40117 * 120.35279 * 0.02562 * 10 8 7 12 12 N 1.31265 * 121.15222 * 179.97438 * 11 10 8 13 13 C 1.32713 * 121.79597 * 0.02562 * 12 11 10 14 14 C 1.40783 * 120.68710 * 0.02562 * 13 12 11 15 15 C 1.39436 * 120.35112 * 179.72268 * 10 8 7 16 16 N 1.35327 * 107.76088 * 180.02562 * 14 13 12 17 17 N 1.28671 * 109.99700 * 359.97438 * 16 14 13 18 18 N 1.37118 * 133.39967 * 180.02562 * 13 12 11 19 19 C 1.46500 * 126.59317 * 359.96008 * 18 13 12 20 20 N 1.46498 * 109.46890 * 304.99875 * 4 2 1 21 21 C 1.36935 * 120.00239 * 275.00034 * 20 4 2 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 4 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 4 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47364 * 179.72253 * 25 23 21 27 27 H 1.48508 * 109.46883 * 299.72375 * 25 23 21 28 28 H 1.48497 * 109.46870 * 59.72186 * 25 23 21 29 29 H 1.08991 * 109.47194 * 300.00042 * 1 2 3 30 30 H 1.08994 * 109.46930 * 60.00317 * 1 2 3 31 31 H 1.09000 * 109.46793 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47080 * 239.99867 * 2 1 3 33 33 H 1.09005 * 109.47235 * 59.99962 * 3 2 1 34 34 H 1.08994 * 109.47808 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.47447 * 300.00428 * 3 2 1 36 36 H 1.08996 * 109.47726 * 304.99907 * 6 4 2 37 37 H 1.09001 * 109.46766 * 65.00647 * 6 4 2 38 38 H 0.96994 * 120.00104 * 0.02562 * 7 6 4 39 39 H 1.07996 * 119.42374 * 359.96895 * 11 10 8 40 40 H 1.08000 * 120.95199 * 0.02562 * 15 10 8 41 41 H 1.09004 * 109.46901 * 89.99614 * 19 18 13 42 42 H 1.08997 * 109.47686 * 210.00096 * 19 18 13 43 43 H 1.09009 * 109.46959 * 330.00455 * 19 18 13 44 44 H 0.97004 * 119.99747 * 95.00774 * 20 4 2 45 45 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1264 -0.6444 1.2952 6 6 1.6352 -2.1955 1.1879 7 7 2.0184 -2.8594 2.4364 8 6 1.7597 -4.1707 2.6093 9 8 1.2087 -4.8028 1.7289 10 6 2.1455 -4.8400 3.8683 11 6 2.7803 -4.1186 4.8880 12 7 3.1295 -4.6974 6.0132 13 6 2.9002 -5.9851 6.2377 14 6 2.2679 -6.7826 5.2650 15 6 1.8761 -6.1950 4.0572 16 7 2.1665 -8.0372 5.7619 17 7 2.6753 -8.0852 6.9428 18 7 3.1556 -6.8168 7.2976 19 6 3.8058 -6.4504 8.5582 20 7 1.4558 -0.1037 2.4423 21 6 2.0441 1.0002 2.9997 22 1 2.9385 1.4157 2.5595 23 6 1.4909 1.5851 4.1305 24 7 0.3978 1.0819 4.6638 25 14 2.2929 3.0913 4.8904 26 1 1.5103 3.5239 6.0760 27 1 3.6786 2.7571 5.3070 28 1 2.3275 4.1903 3.8923 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4426 0.0005 35 1 1.6767 1.9563 -0.8899 36 1 0.5563 -2.2708 1.0527 37 1 2.1409 -2.6765 0.3507 38 1 2.4583 -2.3552 3.1386 39 1 2.9860 -3.0680 4.7457 40 1 1.3841 -6.7756 3.2909 41 1 3.0516 -6.1255 9.2750 42 1 4.3380 -7.3140 8.9570 43 1 4.5116 -5.6389 8.3806 44 1 0.6524 -0.4767 2.8375 45 1 -0.0190 0.3000 4.2690 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319926740.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:14 Heat of formation + Delta-G solvation = 81.176500 kcal Electronic energy + Delta-G solvation = -28291.890865 eV Core-core repulsion = 24346.280100 eV Total energy + Delta-G solvation = -3945.610765 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -43.56791 -41.19793 -39.54290 -38.78122 -36.04185 -35.50769 -34.97177 -33.40282 -32.26813 -31.56155 -29.41338 -28.69574 -27.82228 -26.25304 -25.56041 -25.11189 -23.56958 -22.65459 -21.98992 -20.55256 -19.67912 -19.29434 -19.08429 -18.27134 -17.66420 -17.31387 -16.82775 -16.63456 -16.15427 -15.92765 -15.50030 -15.16458 -15.09401 -15.00367 -14.67909 -14.50254 -14.44358 -14.16281 -14.00697 -13.71131 -13.66076 -13.41935 -12.85112 -12.82783 -12.70267 -12.59676 -12.34445 -12.12382 -12.02574 -11.89878 -11.51450 -11.40781 -11.31094 -11.08744 -10.80900 -10.71886 -10.52198 -10.26468 -9.96857 -8.95816 -8.16164 -5.11804 -1.02728 -0.62412 0.63776 0.81503 1.58164 1.67209 1.73832 1.89156 1.95641 2.44948 2.56839 2.81047 2.92599 3.02373 3.34201 3.46884 3.57206 3.65698 3.82999 3.89346 4.07452 4.25076 4.27232 4.28372 4.31985 4.42590 4.56125 4.58203 4.63928 4.66686 4.75795 4.86576 4.93616 4.96485 5.09790 5.19682 5.20625 5.25870 5.31308 5.46530 5.57766 5.76567 5.85223 6.23912 6.43813 6.54186 6.68740 7.05672 7.24739 8.15438 8.27593 9.34042 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.012142 B = 0.003257 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.583822 B = 8593.617892 C =10477.545948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.105 4.105 3 C -0.137 4.137 4 C 0.174 3.826 5 H 0.059 0.941 6 C 0.118 3.882 7 N -0.702 5.702 8 C 0.571 3.429 9 O -0.569 6.569 10 C -0.204 4.204 11 C 0.222 3.778 12 N -0.489 5.489 13 C 0.275 3.725 14 C -0.088 4.088 15 C 0.085 3.915 16 N -0.216 5.216 17 N 0.004 4.996 18 N -0.376 5.376 19 C 0.089 3.911 20 N -0.732 5.732 21 C -0.298 4.298 22 H 0.071 0.929 23 C -0.098 4.098 24 N -0.981 5.981 25 Si 1.111 2.889 26 H -0.305 1.305 27 H -0.278 1.278 28 H -0.287 1.287 29 H 0.032 0.968 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.081 0.919 33 H 0.049 0.951 34 H 0.047 0.953 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.085 0.915 38 H 0.411 0.589 39 H 0.194 0.806 40 H 0.172 0.828 41 H 0.099 0.901 42 H 0.123 0.877 43 H 0.108 0.892 44 H 0.360 0.640 45 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.317 -11.770 0.334 14.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.127 4.127 3 C -0.195 4.195 4 C 0.065 3.935 5 H 0.077 0.923 6 C -0.006 4.006 7 N -0.352 5.352 8 C 0.358 3.642 9 O -0.450 6.450 10 C -0.213 4.213 11 C 0.048 3.952 12 N -0.203 5.203 13 C 0.031 3.969 14 C -0.214 4.214 15 C 0.054 3.946 16 N -0.095 5.095 17 N 0.023 4.977 18 N -0.173 5.173 19 C -0.050 4.050 20 N -0.374 5.374 21 C -0.430 4.430 22 H 0.089 0.911 23 C -0.290 4.290 24 N -0.630 5.630 25 Si 0.940 3.060 26 H -0.232 1.232 27 H -0.204 1.204 28 H -0.214 1.214 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.099 0.901 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.103 0.897 38 H 0.249 0.751 39 H 0.211 0.789 40 H 0.189 0.811 41 H 0.117 0.883 42 H 0.141 0.859 43 H 0.126 0.874 44 H 0.192 0.808 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 8.368 -12.031 2.136 14.810 hybrid contribution -0.531 -0.236 -1.393 1.510 sum 7.836 -12.267 0.743 14.576 Atomic orbital electron populations 1.21690 0.95985 1.00852 1.00609 1.21589 0.95816 0.96911 0.98359 1.21753 1.00016 0.96543 1.01138 1.20636 0.96863 0.88869 0.87113 0.92275 1.21740 1.00460 0.92479 0.85910 1.45844 1.60311 1.08753 1.20334 1.17799 0.78519 0.82088 0.85831 1.90767 1.44360 1.65558 1.44323 1.20620 1.08183 0.94995 0.97462 1.23385 0.86842 1.00276 0.84731 1.66743 1.22980 1.07042 1.23548 1.19804 0.96679 0.90949 0.89438 1.20511 1.10199 0.91721 0.98949 1.21123 0.88124 0.92607 0.92736 1.74838 1.13799 1.17800 1.03106 1.81663 1.09595 0.99126 1.07364 1.50352 1.46441 1.05645 1.14851 1.22546 0.98765 1.04532 0.79159 1.42513 1.31194 1.33297 1.30405 1.20178 1.08381 1.05661 1.08803 0.91144 1.26575 0.98703 1.06333 0.97419 1.70994 1.22092 1.25701 1.44188 0.82789 0.74644 0.73464 0.75110 1.23246 1.20428 1.21398 0.94870 0.92739 0.92860 0.90126 0.93230 0.93355 0.93182 0.92045 0.89685 0.75130 0.78920 0.81082 0.88263 0.85868 0.87387 0.80775 0.94497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.13 8.74 71.98 0.63 -3.50 16 2 C -0.11 -3.10 2.74 -10.79 -0.03 -3.13 16 3 C -0.14 -4.35 8.46 71.98 0.61 -3.75 16 4 C 0.17 5.50 2.29 44.99 0.10 5.60 16 5 H 0.06 1.88 8.08 -2.38 -0.02 1.86 16 6 C 0.12 3.36 5.10 86.38 0.44 3.80 16 7 N -0.70 -19.47 5.34 -466.09 -2.49 -21.96 16 8 C 0.57 16.45 7.77 86.75 0.67 17.12 16 9 O -0.57 -19.42 16.39 -3.95 -0.06 -19.49 16 10 C -0.20 -5.18 5.88 -20.03 -0.12 -5.30 16 11 C 0.22 5.36 10.69 85.23 0.91 6.27 16 12 N -0.49 -12.53 10.37 -191.98 -1.99 -14.52 16 13 C 0.28 7.11 8.05 134.01 1.08 8.19 16 14 C -0.09 -2.35 7.27 39.63 0.29 -2.06 16 15 C 0.08 2.14 9.75 22.96 0.22 2.37 16 16 N -0.22 -5.94 12.40 -52.14 -0.65 -6.58 16 17 N 0.00 0.10 13.71 37.02 0.51 0.60 16 18 N -0.38 -8.24 4.10 -366.44 -1.50 -9.74 16 19 C 0.09 1.04 11.54 127.77 1.47 2.52 16 20 N -0.73 -29.58 3.53 -322.94 -1.14 -30.71 16 21 C -0.30 -13.96 7.75 84.03 0.65 -13.31 16 22 H 0.07 3.23 7.32 -2.91 -0.02 3.21 16 23 C -0.10 -5.07 5.50 84.86 0.47 -4.60 16 24 N -0.98 -56.00 13.70 21.65 0.30 -55.71 16 25 Si 1.11 48.11 29.92 68.60 2.05 50.17 16 26 H -0.31 -14.12 7.11 99.48 0.71 -13.41 16 27 H -0.28 -11.09 7.11 99.48 0.71 -10.38 16 28 H -0.29 -11.83 7.11 99.48 0.71 -11.13 16 29 H 0.03 1.25 7.47 -2.39 -0.02 1.23 16 30 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.05 1.53 6.46 -2.39 -0.02 1.51 16 32 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 33 H 0.05 1.95 5.99 -2.38 -0.01 1.93 16 34 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.06 1.90 6.34 -2.39 -0.02 1.88 16 37 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.41 11.18 6.17 -92.71 -0.57 10.60 16 39 H 0.19 4.11 6.39 -2.91 -0.02 4.09 16 40 H 0.17 3.99 7.71 -2.91 -0.02 3.97 16 41 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 42 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 44 H 0.36 15.99 6.63 -92.71 -0.61 15.38 16 45 H 0.24 13.89 6.77 -92.71 -0.63 13.26 16 Total: -1.00 -64.90 372.81 2.43 -62.47 By element: Atomic # 1 Polarization: 35.26 SS G_CDS: 0.01 Total: 35.26 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: 7.40 Total: 10.21 kcal Atomic # 7 Polarization: -131.66 SS G_CDS: -6.96 Total: -138.62 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.06 Total: -19.49 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 2.05 Total: 50.17 kcal Total: -64.90 2.43 -62.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319926740.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.644 kcal (2) G-P(sol) polarization free energy of solvation -64.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds