Wall clock time and date at job start Tue Mar 31 2020 18:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47451 * 2 1 4 4 C 1.53004 * 109.46858 * 119.99645 * 2 1 3 5 5 H 1.08996 * 109.47341 * 299.99839 * 4 2 1 6 6 C 1.52996 * 109.47092 * 59.99987 * 4 2 1 7 7 N 1.46499 * 109.47371 * 174.99772 * 6 4 2 8 8 C 1.34774 * 120.00399 * 180.02562 * 7 6 4 9 9 O 1.21549 * 120.00009 * 359.97438 * 8 7 6 10 10 C 1.47870 * 120.00332 * 179.97438 * 8 7 6 11 11 C 1.39459 * 121.11434 * 0.04625 * 10 8 7 12 12 C 1.38611 * 119.37433 * 180.02562 * 11 10 8 13 13 N 1.31586 * 121.63914 * 359.96152 * 12 11 10 14 14 C 1.32209 * 121.86510 * 0.02562 * 13 12 11 15 15 C 1.40866 * 121.11557 * 179.97438 * 10 8 7 16 16 N 1.34389 * 135.14893 * 359.97438 * 15 10 8 17 17 N 1.28694 * 109.15557 * 179.97438 * 16 15 10 18 18 N 1.28778 * 111.75609 * 0.02562 * 17 16 15 19 19 C 1.46501 * 125.87125 * 179.97438 * 18 17 16 20 20 N 1.46501 * 109.46824 * 179.97438 * 4 2 1 21 21 C 1.36928 * 120.00317 * 85.00300 * 20 4 2 22 22 H 1.08000 * 119.99906 * 359.97438 * 21 20 4 23 23 C 1.38820 * 120.00375 * 179.97438 * 21 20 4 24 24 N 1.31617 * 119.99415 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00064 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47086 * 90.00169 * 25 23 21 27 27 H 1.48497 * 109.46732 * 210.00292 * 25 23 21 28 28 H 1.48506 * 109.47002 * 329.99862 * 25 23 21 29 29 H 1.09010 * 109.46830 * 300.00322 * 1 2 3 30 30 H 1.08997 * 109.47090 * 59.99685 * 1 2 3 31 31 H 1.08997 * 109.47234 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47014 * 239.99685 * 2 1 3 33 33 H 1.08995 * 109.47283 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.46787 * 300.00272 * 3 2 1 35 35 H 1.09005 * 109.47115 * 59.99608 * 3 2 1 36 36 H 1.09005 * 109.47284 * 54.99485 * 6 4 2 37 37 H 1.08999 * 109.47561 * 295.00035 * 6 4 2 38 38 H 0.97001 * 119.99901 * 359.97438 * 7 6 4 39 39 H 1.08002 * 120.30905 * 359.97438 * 11 10 8 40 40 H 1.07999 * 119.18023 * 179.97438 * 12 11 10 41 41 H 1.09002 * 109.47307 * 90.02434 * 19 18 17 42 42 H 1.09003 * 109.47411 * 210.02652 * 19 18 17 43 43 H 1.09003 * 109.46999 * 330.02242 * 19 18 17 44 44 H 0.97002 * 119.99750 * 265.00230 * 20 4 2 45 45 H 0.97000 * 119.99341 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6766 -0.2073 2.1393 6 6 1.5299 -2.1636 1.2494 7 7 2.1140 -2.8881 2.3808 8 6 1.8059 -4.1846 2.5824 9 8 1.0430 -4.7527 1.8256 10 6 2.3959 -4.9160 3.7241 11 6 3.2730 -4.2870 4.6072 12 6 3.8054 -5.0072 5.6651 13 7 3.5037 -6.2731 5.8595 14 6 2.6788 -6.9251 5.0580 15 6 2.0897 -6.2711 3.9570 16 7 1.3162 -7.1903 3.3546 17 7 1.4022 -8.3017 3.9978 18 7 2.1903 -8.2065 5.0118 19 6 2.5107 -9.2817 5.9538 20 7 3.5050 -0.7217 1.2490 21 6 4.1902 0.3528 1.7498 22 1 3.6506 1.2009 2.1447 23 6 5.5784 0.3521 1.7500 24 7 6.2359 -0.6813 1.2683 25 14 6.5130 1.8183 2.4326 26 1 6.7603 1.6162 3.8828 27 1 7.8107 1.9519 1.7231 28 1 5.7111 3.0524 2.2344 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.8182 -2.6510 0.3180 37 1 0.4436 -2.1650 1.3389 38 1 2.7231 -2.4349 2.9846 39 1 3.5355 -3.2487 4.4676 40 1 4.4846 -4.5170 6.3468 41 1 3.3837 -9.8288 5.5976 42 1 2.7245 -8.8547 6.9337 43 1 1.6624 -9.9618 6.0312 44 1 3.9896 -1.4833 0.8940 45 1 7.2059 -0.6817 1.2681 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319934610.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:24 Heat of formation + Delta-G solvation = 107.297838 kcal Electronic energy + Delta-G solvation = -28407.160555 eV Core-core repulsion = 24462.682496 eV Total energy + Delta-G solvation = -3944.478059 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 3.03 seconds Orbital eigenvalues (eV) -43.46866 -39.88850 -38.67485 -37.24013 -35.16034 -34.03654 -33.16221 -32.45217 -30.92722 -30.39103 -28.28610 -28.04056 -26.19909 -25.55482 -24.00761 -23.67223 -22.60091 -21.47880 -20.27938 -19.40272 -18.84694 -17.98313 -17.51664 -17.13470 -17.04813 -15.72442 -15.36746 -15.29845 -14.78565 -14.71927 -14.08235 -13.98153 -13.92101 -13.49004 -13.45729 -13.32041 -13.15438 -12.97327 -12.70914 -12.37069 -12.22905 -12.04837 -11.64132 -11.62386 -11.23086 -11.05498 -10.99268 -10.84917 -10.68458 -10.33634 -10.18745 -10.11919 -9.98669 -9.58691 -9.49685 -9.35229 -9.09583 -8.96974 -8.66333 -7.08466 -5.86778 -3.16404 -0.03658 0.76457 1.73065 2.10556 2.89127 3.20968 3.35060 3.42457 3.43777 3.51226 3.64999 4.09158 4.20876 4.43228 4.48156 4.51002 4.68662 4.84031 4.97443 5.17360 5.31025 5.32730 5.41751 5.45493 5.50174 5.61753 5.66563 5.73409 5.87769 5.98216 6.00859 6.16405 6.21235 6.22749 6.36150 6.41959 6.51039 6.60575 6.63256 6.85457 7.04783 7.27451 7.33522 7.62273 7.79169 8.10617 8.30126 8.42446 9.42418 9.96779 10.33021 11.34684 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.012972 B = 0.003277 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.991392 B = 8542.808756 C =10308.871963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.109 4.109 3 C -0.139 4.139 4 C 0.170 3.830 5 H 0.055 0.945 6 C 0.113 3.887 7 N -0.702 5.702 8 C 0.547 3.453 9 O -0.514 6.514 10 C -0.007 4.007 11 C -0.135 4.135 12 C 0.162 3.838 13 N -0.461 5.461 14 C 0.207 3.793 15 C 0.003 3.997 16 N -0.214 5.214 17 N -0.011 5.011 18 N -0.313 5.313 19 C 0.092 3.908 20 N -0.722 5.722 21 C -0.238 4.238 22 H 0.073 0.927 23 C -0.009 4.009 24 N -0.928 5.928 25 Si 0.902 3.098 26 H -0.290 1.290 27 H -0.293 1.293 28 H -0.282 1.282 29 H 0.049 0.951 30 H 0.045 0.955 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.031 0.969 35 H 0.040 0.960 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.409 0.591 39 H 0.164 0.836 40 H 0.183 0.817 41 H 0.090 0.910 42 H 0.101 0.899 43 H 0.102 0.898 44 H 0.385 0.615 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.833 -9.816 10.281 15.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.131 4.131 3 C -0.196 4.196 4 C 0.059 3.941 5 H 0.073 0.927 6 C -0.011 4.011 7 N -0.355 5.355 8 C 0.331 3.669 9 O -0.390 6.390 10 C -0.023 4.023 11 C -0.159 4.159 12 C -0.011 4.011 13 N -0.175 5.175 14 C -0.035 4.035 15 C -0.126 4.126 16 N -0.088 5.088 17 N 0.007 4.993 18 N -0.115 5.115 19 C -0.048 4.048 20 N -0.364 5.364 21 C -0.369 4.369 22 H 0.091 0.909 23 C -0.206 4.206 24 N -0.576 5.576 25 Si 0.733 3.267 26 H -0.217 1.217 27 H -0.219 1.219 28 H -0.208 1.208 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.105 0.895 34 H 0.050 0.950 35 H 0.059 0.941 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.247 0.753 39 H 0.182 0.818 40 H 0.200 0.800 41 H 0.108 0.892 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.923 -11.602 9.713 17.079 hybrid contribution 1.548 1.760 0.474 2.391 sum -6.375 -9.842 10.186 15.533 Atomic orbital electron populations 1.21949 0.96825 1.01034 1.00961 1.21726 0.93573 0.97794 1.00014 1.21819 1.04195 0.94599 0.99017 1.20559 0.86405 0.90961 0.96151 0.92715 1.21818 0.97478 0.93186 0.88575 1.45875 1.48296 1.10195 1.31091 1.17863 0.82245 0.82272 0.84504 1.90840 1.34862 1.67496 1.45794 1.19741 0.96301 0.90260 0.95995 1.22564 0.96007 1.02707 0.94613 1.22859 0.95725 0.87107 0.95373 1.66281 1.13060 1.10103 1.28054 1.19793 0.99857 0.87518 0.96324 1.20103 1.00642 0.95542 0.96353 1.75537 1.17847 0.94772 1.20673 1.78241 1.07029 1.19262 0.94758 1.46978 1.33335 1.08450 1.22732 1.22251 1.03634 0.87710 0.91213 1.42486 0.98720 1.21272 1.73885 1.19192 0.88740 0.96443 1.32506 0.90884 1.24725 0.96468 0.97650 1.01752 1.69662 1.06961 1.29796 1.51152 0.86283 0.79636 0.82380 0.78430 1.21741 1.21918 1.20769 0.93179 0.93542 0.92974 0.91831 0.89489 0.94991 0.94063 0.91515 0.91207 0.75305 0.81836 0.79992 0.89180 0.88016 0.87905 0.78061 0.93465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 8.84 37.16 0.33 -1.72 16 2 C -0.11 -1.79 2.69 -90.62 -0.24 -2.04 16 3 C -0.14 -2.41 8.26 37.16 0.31 -2.10 16 4 C 0.17 2.94 2.18 -67.93 -0.15 2.79 16 5 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 6 C 0.11 1.86 4.73 -4.04 -0.02 1.84 16 7 N -0.70 -11.22 5.35 -61.24 -0.33 -11.55 16 8 C 0.55 9.50 7.79 -12.32 -0.10 9.41 16 9 O -0.51 -10.65 16.27 5.32 0.09 -10.56 16 10 C -0.01 -0.10 5.92 -104.51 -0.62 -0.72 16 11 C -0.14 -1.59 9.61 -38.99 -0.37 -1.96 16 12 C 0.16 1.66 11.14 -17.52 -0.20 1.46 16 13 N -0.46 -5.61 10.35 -12.39 -0.13 -5.74 16 14 C 0.21 2.89 8.08 -156.20 -1.26 1.63 16 15 C 0.00 0.05 6.97 -84.72 -0.59 -0.54 16 16 N -0.21 -3.81 11.92 32.23 0.38 -3.43 16 17 N -0.01 -0.17 13.07 60.35 0.79 0.62 16 18 N -0.31 -3.84 3.80 -67.22 -0.26 -4.09 16 19 C 0.09 0.59 11.41 59.85 0.68 1.27 16 20 N -0.72 -15.42 4.44 -53.43 -0.24 -15.65 16 21 C -0.24 -5.66 7.57 -15.06 -0.11 -5.78 16 22 H 0.07 1.71 7.39 -52.49 -0.39 1.32 16 23 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 24 N -0.93 -25.47 13.06 55.49 0.72 -24.75 16 25 Si 0.90 20.51 29.55 -169.99 -5.02 15.49 16 26 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 28 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 29 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.68 6.54 -51.93 -0.34 0.34 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.09 1.79 6.01 -51.93 -0.31 1.48 16 34 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.07 1.08 6.71 -51.93 -0.35 0.73 16 38 H 0.41 6.22 6.28 -40.82 -0.26 5.96 16 39 H 0.16 1.66 6.53 -52.49 -0.34 1.31 16 40 H 0.18 1.15 8.06 -52.49 -0.42 0.73 16 41 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.39 9.12 7.80 -40.82 -0.32 8.81 16 45 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 374.82 15.07 5.65 5.65 Total: -1.00 -32.40 374.82 -6.87 -39.27 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -6.09 Total: 11.53 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: -2.44 Total: 3.20 kcal Atomic # 7 Polarization: -65.54 SS G_CDS: 0.95 Total: -64.59 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.40 -6.87 -39.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319934610.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.569 kcal (2) G-P(sol) polarization free energy of solvation -32.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.03 seconds