Wall clock time and date at job start Tue Mar 31 2020 18:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47451 * 2 1 4 4 C 1.53004 * 109.46858 * 119.99645 * 2 1 3 5 5 H 1.08996 * 109.47341 * 299.99839 * 4 2 1 6 6 C 1.52996 * 109.47092 * 59.99987 * 4 2 1 7 7 N 1.46499 * 109.47371 * 174.99772 * 6 4 2 8 8 C 1.34774 * 120.00399 * 180.02562 * 7 6 4 9 9 O 1.21549 * 120.00009 * 359.97438 * 8 7 6 10 10 C 1.47870 * 120.00332 * 179.97438 * 8 7 6 11 11 C 1.39459 * 121.11434 * 0.04625 * 10 8 7 12 12 C 1.38611 * 119.37433 * 180.02562 * 11 10 8 13 13 N 1.31586 * 121.63914 * 359.96152 * 12 11 10 14 14 C 1.32209 * 121.86510 * 0.02562 * 13 12 11 15 15 C 1.40866 * 121.11557 * 179.97438 * 10 8 7 16 16 N 1.34389 * 135.14893 * 359.97438 * 15 10 8 17 17 N 1.28694 * 109.15557 * 179.97438 * 16 15 10 18 18 N 1.28778 * 111.75609 * 0.02562 * 17 16 15 19 19 C 1.46501 * 125.87125 * 179.97438 * 18 17 16 20 20 N 1.46501 * 109.46824 * 179.97438 * 4 2 1 21 21 C 1.36928 * 120.00317 * 85.00300 * 20 4 2 22 22 H 1.08000 * 119.99906 * 359.97438 * 21 20 4 23 23 C 1.38820 * 120.00375 * 179.97438 * 21 20 4 24 24 N 1.31617 * 119.99415 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00064 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47086 * 90.00169 * 25 23 21 27 27 H 1.48497 * 109.46732 * 210.00292 * 25 23 21 28 28 H 1.48506 * 109.47002 * 329.99862 * 25 23 21 29 29 H 1.09010 * 109.46830 * 300.00322 * 1 2 3 30 30 H 1.08997 * 109.47090 * 59.99685 * 1 2 3 31 31 H 1.08997 * 109.47234 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47014 * 239.99685 * 2 1 3 33 33 H 1.08995 * 109.47283 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.46787 * 300.00272 * 3 2 1 35 35 H 1.09005 * 109.47115 * 59.99608 * 3 2 1 36 36 H 1.09005 * 109.47284 * 54.99485 * 6 4 2 37 37 H 1.08999 * 109.47561 * 295.00035 * 6 4 2 38 38 H 0.97001 * 119.99901 * 359.97438 * 7 6 4 39 39 H 1.08002 * 120.30905 * 359.97438 * 11 10 8 40 40 H 1.07999 * 119.18023 * 179.97438 * 12 11 10 41 41 H 1.09002 * 109.47307 * 90.02434 * 19 18 17 42 42 H 1.09003 * 109.47411 * 210.02652 * 19 18 17 43 43 H 1.09003 * 109.46999 * 330.02242 * 19 18 17 44 44 H 0.97002 * 119.99750 * 265.00230 * 20 4 2 45 45 H 0.97000 * 119.99341 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6766 -0.2073 2.1393 6 6 1.5299 -2.1636 1.2494 7 7 2.1140 -2.8881 2.3808 8 6 1.8059 -4.1846 2.5824 9 8 1.0430 -4.7527 1.8256 10 6 2.3959 -4.9160 3.7241 11 6 3.2730 -4.2870 4.6072 12 6 3.8054 -5.0072 5.6651 13 7 3.5037 -6.2731 5.8595 14 6 2.6788 -6.9251 5.0580 15 6 2.0897 -6.2711 3.9570 16 7 1.3162 -7.1903 3.3546 17 7 1.4022 -8.3017 3.9978 18 7 2.1903 -8.2065 5.0118 19 6 2.5107 -9.2817 5.9538 20 7 3.5050 -0.7217 1.2490 21 6 4.1902 0.3528 1.7498 22 1 3.6506 1.2009 2.1447 23 6 5.5784 0.3521 1.7500 24 7 6.2359 -0.6813 1.2683 25 14 6.5130 1.8183 2.4326 26 1 6.7603 1.6162 3.8828 27 1 7.8107 1.9519 1.7231 28 1 5.7111 3.0524 2.2344 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.8182 -2.6510 0.3180 37 1 0.4436 -2.1650 1.3389 38 1 2.7231 -2.4349 2.9846 39 1 3.5355 -3.2487 4.4676 40 1 4.4846 -4.5170 6.3468 41 1 3.3837 -9.8288 5.5976 42 1 2.7245 -8.8547 6.9337 43 1 1.6624 -9.9618 6.0312 44 1 3.9896 -1.4833 0.8940 45 1 7.2059 -0.6817 1.2681 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319934610.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:21 Heat of formation + Delta-G solvation = 83.935027 kcal Electronic energy + Delta-G solvation = -28408.173643 eV Core-core repulsion = 24462.682496 eV Total energy + Delta-G solvation = -3945.491146 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 4.17 seconds Orbital eigenvalues (eV) -44.49539 -41.11982 -39.79314 -38.69556 -36.11849 -35.42814 -34.87852 -33.50460 -32.09945 -31.90438 -29.62722 -28.90340 -27.47780 -26.72443 -25.54314 -24.75997 -23.92354 -22.77682 -21.49849 -20.71061 -19.95041 -19.27152 -18.75958 -18.45525 -18.11158 -17.04049 -16.82427 -16.45685 -16.20278 -15.71035 -15.60824 -15.29243 -15.00511 -14.91225 -14.67015 -14.32976 -14.09544 -14.07005 -13.79321 -13.65729 -13.43154 -13.39947 -12.87367 -12.79719 -12.67087 -12.62402 -12.42317 -12.24767 -12.13917 -11.97505 -11.73780 -11.46963 -11.36687 -11.24148 -10.79245 -10.62523 -10.35018 -10.21855 -9.94835 -8.90773 -7.81033 -5.08422 -1.08734 -0.20821 0.89001 0.98122 1.55281 1.58630 1.64086 1.72531 1.97680 2.53285 2.58324 2.65464 3.13154 3.21365 3.42209 3.53028 3.62638 3.88384 3.94345 4.04689 4.22820 4.25648 4.31894 4.34812 4.38108 4.48422 4.55800 4.58331 4.67687 4.75186 4.81538 4.95754 5.01133 5.08414 5.10091 5.18404 5.29263 5.32757 5.36289 5.50175 5.66428 5.70224 5.80702 6.38071 6.38163 6.48224 7.03836 7.11064 7.46975 8.16882 8.43127 9.41421 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.012972 B = 0.003277 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.991392 B = 8542.808756 C =10308.871963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.107 4.107 3 C -0.134 4.134 4 C 0.174 3.826 5 H 0.064 0.936 6 C 0.121 3.879 7 N -0.694 5.694 8 C 0.547 3.453 9 O -0.557 6.557 10 C -0.039 4.039 11 C -0.113 4.113 12 C 0.173 3.827 13 N -0.454 5.454 14 C 0.196 3.804 15 C -0.024 4.024 16 N -0.267 5.267 17 N -0.021 5.021 18 N -0.297 5.297 19 C 0.078 3.922 20 N -0.727 5.727 21 C -0.213 4.213 22 H 0.081 0.919 23 C -0.067 4.067 24 N -0.966 5.966 25 Si 0.955 3.045 26 H -0.285 1.285 27 H -0.310 1.310 28 H -0.275 1.275 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.048 0.952 33 H 0.050 0.950 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.050 0.950 37 H 0.084 0.916 38 H 0.414 0.586 39 H 0.182 0.818 40 H 0.232 0.768 41 H 0.109 0.891 42 H 0.119 0.881 43 H 0.124 0.876 44 H 0.372 0.628 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.042 -9.068 12.599 17.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.129 4.129 3 C -0.191 4.191 4 C 0.065 3.935 5 H 0.082 0.918 6 C -0.003 4.003 7 N -0.346 5.346 8 C 0.333 3.667 9 O -0.436 6.436 10 C -0.055 4.055 11 C -0.136 4.136 12 C 0.000 4.000 13 N -0.168 5.168 14 C -0.045 4.045 15 C -0.154 4.154 16 N -0.141 5.141 17 N -0.002 5.002 18 N -0.100 5.100 19 C -0.060 4.060 20 N -0.367 5.367 21 C -0.345 4.345 22 H 0.098 0.902 23 C -0.259 4.259 24 N -0.617 5.617 25 Si 0.787 3.213 26 H -0.212 1.212 27 H -0.237 1.237 28 H -0.200 1.200 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.102 0.898 38 H 0.253 0.747 39 H 0.199 0.801 40 H 0.248 0.752 41 H 0.127 0.873 42 H 0.138 0.862 43 H 0.143 0.857 44 H 0.204 0.796 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -8.188 -10.853 12.053 18.169 hybrid contribution 1.591 1.524 -0.180 2.210 sum -6.597 -9.329 11.873 16.478 Atomic orbital electron populations 1.21863 0.94125 1.01795 1.02196 1.21634 0.95789 0.96895 0.98556 1.21728 1.01732 0.95373 1.00298 1.20674 0.84101 0.91727 0.96972 0.91819 1.21715 0.98186 0.92282 0.88137 1.45794 1.48073 1.09936 1.30841 1.18213 0.81548 0.82285 0.84656 1.90805 1.36906 1.68330 1.47528 1.19687 0.98694 0.90364 0.96791 1.22872 0.93797 1.03346 0.93588 1.23698 0.94988 0.86331 0.94989 1.66465 1.12314 1.10727 1.27277 1.19973 1.00336 0.88107 0.96128 1.20415 1.01375 0.96108 0.97522 1.75452 1.20012 0.95956 1.22638 1.78114 1.07828 1.18696 0.95578 1.47460 1.31474 1.08958 1.22118 1.22796 1.05414 0.86926 0.90854 1.42592 1.00355 1.20218 1.73524 1.19452 0.88691 0.96520 1.29796 0.90154 1.25296 0.97522 0.99621 1.03509 1.69807 1.06338 1.31658 1.53875 0.85406 0.77797 0.80367 0.77758 1.21207 1.23736 1.20033 0.92012 0.92262 0.92499 0.93315 0.93069 0.93292 0.93251 0.93207 0.89841 0.74726 0.80088 0.75199 0.87309 0.86230 0.85724 0.79559 0.94510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 8.84 71.98 0.64 -2.89 16 2 C -0.11 -3.37 2.69 -10.79 -0.03 -3.40 16 3 C -0.13 -4.42 8.26 71.98 0.59 -3.82 16 4 C 0.17 5.85 2.18 44.99 0.10 5.95 16 5 H 0.06 2.08 8.08 -2.39 -0.02 2.06 16 6 C 0.12 3.92 4.73 86.38 0.41 4.33 16 7 N -0.69 -22.11 5.35 -465.96 -2.49 -24.60 16 8 C 0.55 19.47 7.79 86.79 0.68 20.14 16 9 O -0.56 -24.10 16.27 -3.87 -0.06 -24.16 16 10 C -0.04 -1.21 5.92 -19.79 -0.12 -1.33 16 11 C -0.11 -2.43 9.61 22.65 0.22 -2.21 16 12 C 0.17 2.98 11.14 84.82 0.94 3.93 16 13 N -0.45 -9.91 10.35 -193.10 -2.00 -11.91 16 14 C 0.20 5.30 8.08 134.17 1.08 6.38 16 15 C -0.02 -0.79 6.97 40.06 0.28 -0.51 16 16 N -0.27 -9.95 11.92 -51.94 -0.62 -10.57 16 17 N -0.02 -0.63 13.07 37.02 0.48 -0.15 16 18 N -0.30 -7.04 3.80 -366.59 -1.39 -8.43 16 19 C 0.08 0.82 11.41 127.77 1.46 2.28 16 20 N -0.73 -30.80 4.44 -322.94 -1.43 -32.23 16 21 C -0.21 -9.95 7.57 84.04 0.64 -9.32 16 22 H 0.08 3.61 7.39 -2.91 -0.02 3.59 16 23 C -0.07 -3.41 5.50 84.86 0.47 -2.94 16 24 N -0.97 -53.70 13.06 21.65 0.28 -53.42 16 25 Si 0.96 41.97 29.55 68.60 2.03 44.00 16 26 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 27 H -0.31 -14.38 7.11 99.48 0.71 -13.67 16 28 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 29 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 30 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.06 1.37 6.54 -2.39 -0.02 1.35 16 32 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.05 2.06 6.01 -2.39 -0.01 2.04 16 34 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 36 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 37 H 0.08 2.51 6.71 -2.39 -0.02 2.49 16 38 H 0.41 12.23 6.28 -92.71 -0.58 11.65 16 39 H 0.18 3.21 6.53 -2.91 -0.02 3.19 16 40 H 0.23 1.69 8.06 -2.91 -0.02 1.66 16 41 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.37 17.85 7.80 -92.71 -0.72 17.13 16 45 H 0.25 13.63 8.31 -92.71 -0.77 12.86 16 Total: -1.00 -73.29 374.82 1.89 -71.40 By element: Atomic # 1 Polarization: 33.75 SS G_CDS: -0.26 Total: 33.49 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: 7.35 Total: 16.58 kcal Atomic # 7 Polarization: -134.14 SS G_CDS: -7.17 Total: -141.31 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -0.06 Total: -24.16 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Total: -73.29 1.89 -71.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319934610.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.330 kcal (2) G-P(sol) polarization free energy of solvation -73.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.17 seconds