Wall clock time and date at job start Tue Mar 31 2020 17:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35676 * 120.48497 * 2 1 4 4 C 1.40180 * 119.26947 * 179.73791 * 3 2 1 5 5 N 1.31248 * 120.35737 * 0.54569 * 4 3 2 6 6 C 1.33987 * 120.88125 * 359.72719 * 5 4 3 7 7 N 1.32499 * 132.34554 * 180.02562 * 6 5 4 8 8 C 1.33472 * 109.75615 * 180.02562 * 7 6 5 9 9 C 1.48127 * 125.32252 * 180.02562 * 8 7 6 10 10 O 1.21525 * 119.99866 * 179.97438 * 9 8 7 11 11 N 1.34776 * 120.00109 * 359.97426 * 9 8 7 12 12 C 1.46505 * 119.99854 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.46785 * 179.97438 * 12 11 9 14 14 H 1.09002 * 109.46916 * 65.00458 * 13 12 11 15 15 N 1.46496 * 109.47382 * 305.00051 * 13 12 11 16 16 C 1.36935 * 120.00164 * 155.00293 * 15 13 12 17 17 H 1.08003 * 119.99751 * 359.97438 * 16 15 13 18 18 C 1.38811 * 120.00427 * 180.02562 * 16 15 13 19 19 N 1.31620 * 119.99491 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00392 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46912 * 60.00016 * 20 18 16 22 22 H 1.48497 * 109.47237 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47124 * 300.00104 * 20 18 16 24 24 C 1.52998 * 109.46687 * 184.99952 * 13 12 11 25 25 C 1.52995 * 109.47455 * 300.00203 * 24 13 12 26 26 C 1.53008 * 109.47216 * 60.00332 * 24 13 12 27 27 N 1.31989 * 109.35071 * 359.97438 * 8 7 6 28 28 N 1.36170 * 120.48318 * 180.28093 * 2 1 3 29 29 H 1.09002 * 109.47152 * 269.72098 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.72198 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.72179 * 1 2 3 32 32 H 1.08003 * 120.36439 * 359.97438 * 3 2 1 33 33 H 1.07998 * 119.81802 * 180.29920 * 4 3 2 34 34 H 0.96992 * 120.00083 * 0.02562 * 11 9 8 35 35 H 1.08997 * 109.47230 * 300.00281 * 12 11 9 36 36 H 1.08999 * 109.46924 * 60.00307 * 12 11 9 37 37 H 0.97004 * 120.00089 * 335.00339 * 15 13 12 38 38 H 0.97008 * 119.99875 * 179.97438 * 19 18 16 39 39 H 1.09003 * 109.46872 * 180.02562 * 24 13 12 40 40 H 1.08998 * 109.47641 * 180.02562 * 25 24 13 41 41 H 1.09002 * 109.47306 * 300.00203 * 25 24 13 42 42 H 1.08997 * 109.47613 * 59.99933 * 25 24 13 43 43 H 1.08994 * 109.46769 * 59.99715 * 26 24 13 44 44 H 1.08998 * 109.46887 * 180.02562 * 26 24 13 45 45 H 1.08995 * 109.46382 * 299.99798 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1692 0.0000 4 6 3.5968 1.1395 0.0056 5 7 4.2360 -0.0068 0.0000 6 6 3.5665 -1.1675 -0.0057 7 7 3.9689 -2.4299 -0.0114 8 6 2.9091 -3.2412 -0.0161 9 6 2.9637 -4.7214 -0.0227 10 8 1.9344 -5.3674 -0.0262 11 7 4.1550 -5.3519 -0.0247 12 6 4.2089 -6.8159 -0.0306 13 6 5.6692 -7.2723 -0.0325 14 1 6.1456 -6.9700 0.9002 15 7 6.3717 -6.6574 -1.1614 16 6 7.7283 -6.4789 -1.1086 17 1 8.2804 -6.7912 -0.2344 18 6 8.3939 -5.8958 -2.1780 19 7 7.7210 -5.5148 -3.2431 20 14 10.2444 -5.6517 -2.1057 21 1 10.9114 -6.9685 -1.9431 22 1 10.7092 -5.0140 -3.3636 23 1 10.5840 -4.7792 -0.9530 24 6 5.7272 -8.7955 -0.1643 25 6 4.9936 -9.4378 1.0147 26 6 5.0585 -9.2200 -1.4734 27 7 1.8048 -2.5182 -0.0130 28 7 2.1978 -1.1735 -0.0058 29 1 -0.3633 -0.0050 1.0277 30 1 -0.3633 -0.8875 -0.5182 31 1 -0.3633 0.8925 -0.5095 32 1 1.6692 2.1124 -0.0004 33 1 4.1536 2.0649 0.0105 34 1 4.9765 -4.8363 -0.0215 35 1 3.7084 -7.2015 0.8576 36 1 3.7092 -7.1943 -0.9223 37 1 5.8758 -6.3765 -1.9464 38 1 8.1860 -5.1068 -3.9904 39 1 6.7675 -9.1208 -0.1652 40 1 5.0352 -10.5230 0.9211 41 1 5.4699 -9.1355 1.9474 42 1 3.9532 -9.1126 1.0161 43 1 5.5811 -8.7624 -2.3133 44 1 5.0994 -10.3052 -1.5671 45 1 4.0182 -8.8947 -1.4720 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319958219.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:45 Heat of formation + Delta-G solvation = 110.215034 kcal Electronic energy + Delta-G solvation = -28264.126266 eV Core-core repulsion = 24319.774706 eV Total energy + Delta-G solvation = -3944.351560 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.11889 -39.76070 -38.68449 -37.25201 -35.53860 -33.88273 -33.16815 -32.06461 -31.13893 -30.32344 -28.90027 -27.82667 -26.59344 -25.26580 -24.43486 -23.55525 -22.47985 -21.97113 -20.24078 -18.98234 -18.68350 -18.10513 -17.34197 -16.97658 -16.87047 -15.95150 -15.86751 -15.19362 -14.60412 -14.54471 -14.24996 -13.99034 -13.74318 -13.65521 -13.47479 -13.17019 -12.99013 -12.93978 -12.87274 -12.84588 -12.58272 -12.00468 -11.76500 -11.41980 -11.12422 -10.91327 -10.81886 -10.59569 -10.42583 -10.31767 -10.28900 -10.16721 -10.09659 -9.96704 -9.70933 -9.60737 -8.99980 -8.86479 -8.68669 -6.95609 -5.73235 -3.03236 0.06014 0.37659 1.48867 1.73526 2.86510 2.99322 3.17929 3.47391 3.47862 3.52611 3.53000 3.73274 3.93600 4.34850 4.54129 4.62085 4.78102 4.82413 4.88902 4.90078 5.30021 5.36147 5.42594 5.54661 5.57068 5.68243 5.76793 5.77603 5.81896 5.84960 5.94395 6.00125 6.12638 6.20055 6.36995 6.41078 6.45161 6.60690 6.76448 6.83888 7.05149 7.09292 7.14461 7.51361 7.73479 7.88040 8.34255 8.43578 9.55794 10.09346 10.44858 11.48492 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.010853 B = 0.003461 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.338262 B = 8088.160626 C =10197.055184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.202 3.798 3 C -0.229 4.229 4 C 0.209 3.791 5 N -0.448 5.448 6 C 0.445 3.555 7 N -0.486 5.486 8 C 0.247 3.753 9 C 0.605 3.395 10 O -0.522 6.522 11 N -0.680 5.680 12 C 0.109 3.891 13 C 0.170 3.830 14 H 0.056 0.944 15 N -0.719 5.719 16 C -0.243 4.243 17 H 0.070 0.930 18 C -0.007 4.007 19 N -0.928 5.928 20 Si 0.905 3.095 21 H -0.287 1.287 22 H -0.292 1.292 23 H -0.285 1.285 24 C -0.110 4.110 25 C -0.149 4.149 26 C -0.141 4.141 27 N -0.273 5.273 28 N -0.329 5.329 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.174 0.826 33 H 0.192 0.808 34 H 0.424 0.576 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.386 0.614 38 H 0.255 0.745 39 H 0.074 0.926 40 H 0.046 0.954 41 H 0.049 0.951 42 H 0.052 0.948 43 H 0.068 0.932 44 H 0.039 0.961 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.467 12.945 8.254 21.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.084 3.916 3 C -0.254 4.254 4 C 0.022 3.978 5 N -0.163 5.163 6 C 0.084 3.916 7 N -0.219 5.219 8 C -0.037 4.037 9 C 0.384 3.616 10 O -0.396 6.396 11 N -0.332 5.332 12 C -0.015 4.015 13 C 0.059 3.941 14 H 0.074 0.926 15 N -0.360 5.360 16 C -0.374 4.374 17 H 0.088 0.912 18 C -0.203 4.203 19 N -0.576 5.576 20 Si 0.736 3.264 21 H -0.214 1.214 22 H -0.218 1.218 23 H -0.212 1.212 24 C -0.132 4.132 25 C -0.207 4.207 26 C -0.199 4.199 27 N -0.106 5.106 28 N -0.111 5.111 29 H 0.115 0.885 30 H 0.110 0.890 31 H 0.116 0.884 32 H 0.192 0.808 33 H 0.209 0.791 34 H 0.262 0.738 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.220 0.780 38 H 0.065 0.935 39 H 0.092 0.908 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.087 0.913 44 H 0.058 0.942 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -14.396 11.581 8.263 20.239 hybrid contribution 0.594 0.903 -0.384 1.147 sum -13.802 12.484 7.879 20.210 Atomic orbital electron populations 1.21083 0.86290 1.05666 1.04973 1.20931 0.96725 0.81974 0.91963 1.21821 0.95777 0.97840 1.09994 1.23637 0.91713 0.95837 0.86613 1.68095 1.36155 0.95026 1.16996 1.22769 0.78223 0.93715 0.96881 1.70976 1.27973 0.96303 1.26636 1.24330 0.85758 0.97031 0.96552 1.16313 0.84894 0.81799 0.78605 1.90812 1.33720 1.64795 1.50313 1.45809 1.08108 1.08604 1.70703 1.22017 0.99469 0.77704 1.02279 1.20514 0.88978 0.91365 0.93217 0.92641 1.42426 1.05242 1.71614 1.16739 1.19135 0.83600 1.33657 1.00991 0.91177 1.24709 0.97727 1.01360 0.96533 1.69654 1.34623 1.46597 1.06683 0.86308 0.85707 0.77668 0.76703 1.21410 1.21840 1.21201 1.21725 1.00006 0.97338 0.94150 1.21934 1.00327 0.99950 0.98523 1.21779 0.99855 0.99476 0.98760 1.78847 1.19357 0.82889 1.29555 1.49101 1.09237 1.06331 1.46414 0.88525 0.89018 0.88360 0.80839 0.79087 0.73757 0.90978 0.90728 0.77999 0.93492 0.90780 0.93500 0.93174 0.92923 0.91265 0.94231 0.93568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.68 10.13 36.01 0.36 -0.31 16 2 C 0.20 1.80 6.86 -81.58 -0.56 1.24 16 3 C -0.23 -1.28 9.72 -39.77 -0.39 -1.67 16 4 C 0.21 1.56 11.27 -17.07 -0.19 1.37 16 5 N -0.45 -6.14 10.48 -13.79 -0.14 -6.29 16 6 C 0.44 7.36 8.99 -323.04 -2.90 4.46 16 7 N -0.49 -9.39 10.89 -12.23 -0.13 -9.53 16 8 C 0.25 4.68 7.92 -156.78 -1.24 3.44 16 9 C 0.60 11.77 7.84 -12.20 -0.10 11.67 16 10 O -0.52 -10.92 17.07 5.34 0.09 -10.83 16 11 N -0.68 -12.84 5.39 -61.16 -0.33 -13.17 16 12 C 0.11 1.92 4.51 -4.04 -0.02 1.91 16 13 C 0.17 3.23 2.27 -67.93 -0.15 3.08 16 14 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 15 N -0.72 -17.04 3.80 -53.43 -0.20 -17.24 16 16 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 17 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 18 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 19 N -0.93 -27.72 13.06 55.49 0.72 -27.00 16 20 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 24 C -0.11 -1.90 2.91 -90.62 -0.26 -2.16 16 25 C -0.15 -2.10 8.84 37.16 0.33 -1.77 16 26 C -0.14 -2.43 8.69 37.16 0.32 -2.10 16 27 N -0.27 -4.72 12.67 32.02 0.41 -4.31 16 28 N -0.33 -4.72 3.91 -10.07 -0.04 -4.76 16 29 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.10 0.22 8.09 -51.93 -0.42 -0.20 16 32 H 0.17 0.14 8.06 -52.48 -0.42 -0.28 16 33 H 0.19 0.52 8.06 -52.49 -0.42 0.10 16 34 H 0.42 8.57 7.81 -40.82 -0.32 8.25 16 35 H 0.07 1.16 6.71 -51.93 -0.35 0.81 16 36 H 0.07 1.36 6.17 -51.93 -0.32 1.04 16 37 H 0.39 9.99 7.80 -40.82 -0.32 9.68 16 38 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.05 0.70 6.54 -51.93 -0.34 0.36 16 43 H 0.07 1.39 7.60 -51.93 -0.39 1.00 16 44 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.05 0.74 6.32 -51.93 -0.33 0.42 16 LS Contribution 379.74 15.07 5.72 5.72 Total: -1.00 -35.58 379.74 -10.11 -45.69 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -6.14 Total: 12.12 kcal Atomic # 6 Polarization: 17.28 SS G_CDS: -5.04 Total: 12.24 kcal Atomic # 7 Polarization: -82.57 SS G_CDS: 0.28 Total: -82.29 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.09 Total: -10.83 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.58 -10.11 -45.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319958219.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.904 kcal (2) G-P(sol) polarization free energy of solvation -35.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds