Wall clock time and date at job start Tue Mar 31 2020 17:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35676 * 120.48497 * 2 1 4 4 C 1.40180 * 119.26947 * 179.73791 * 3 2 1 5 5 N 1.31248 * 120.35737 * 0.54569 * 4 3 2 6 6 C 1.33987 * 120.88125 * 359.72719 * 5 4 3 7 7 N 1.32499 * 132.34554 * 180.02562 * 6 5 4 8 8 C 1.33472 * 109.75615 * 180.02562 * 7 6 5 9 9 C 1.48127 * 125.32252 * 180.02562 * 8 7 6 10 10 O 1.21525 * 119.99866 * 179.97438 * 9 8 7 11 11 N 1.34776 * 120.00109 * 359.97426 * 9 8 7 12 12 C 1.46505 * 119.99854 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.46785 * 179.97438 * 12 11 9 14 14 H 1.09002 * 109.46916 * 65.00458 * 13 12 11 15 15 N 1.46496 * 109.47382 * 305.00051 * 13 12 11 16 16 C 1.36935 * 120.00164 * 155.00293 * 15 13 12 17 17 H 1.08003 * 119.99751 * 359.97438 * 16 15 13 18 18 C 1.38811 * 120.00427 * 180.02562 * 16 15 13 19 19 N 1.31620 * 119.99491 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00392 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46912 * 60.00016 * 20 18 16 22 22 H 1.48497 * 109.47237 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47124 * 300.00104 * 20 18 16 24 24 C 1.52998 * 109.46687 * 184.99952 * 13 12 11 25 25 C 1.52995 * 109.47455 * 300.00203 * 24 13 12 26 26 C 1.53008 * 109.47216 * 60.00332 * 24 13 12 27 27 N 1.31989 * 109.35071 * 359.97438 * 8 7 6 28 28 N 1.36170 * 120.48318 * 180.28093 * 2 1 3 29 29 H 1.09002 * 109.47152 * 269.72098 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.72198 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.72179 * 1 2 3 32 32 H 1.08003 * 120.36439 * 359.97438 * 3 2 1 33 33 H 1.07998 * 119.81802 * 180.29920 * 4 3 2 34 34 H 0.96992 * 120.00083 * 0.02562 * 11 9 8 35 35 H 1.08997 * 109.47230 * 300.00281 * 12 11 9 36 36 H 1.08999 * 109.46924 * 60.00307 * 12 11 9 37 37 H 0.97004 * 120.00089 * 335.00339 * 15 13 12 38 38 H 0.97008 * 119.99875 * 179.97438 * 19 18 16 39 39 H 1.09003 * 109.46872 * 180.02562 * 24 13 12 40 40 H 1.08998 * 109.47641 * 180.02562 * 25 24 13 41 41 H 1.09002 * 109.47306 * 300.00203 * 25 24 13 42 42 H 1.08997 * 109.47613 * 59.99933 * 25 24 13 43 43 H 1.08994 * 109.46769 * 59.99715 * 26 24 13 44 44 H 1.08998 * 109.46887 * 180.02562 * 26 24 13 45 45 H 1.08995 * 109.46382 * 299.99798 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1692 0.0000 4 6 3.5968 1.1395 0.0056 5 7 4.2360 -0.0068 0.0000 6 6 3.5665 -1.1675 -0.0057 7 7 3.9689 -2.4299 -0.0114 8 6 2.9091 -3.2412 -0.0161 9 6 2.9637 -4.7214 -0.0227 10 8 1.9344 -5.3674 -0.0262 11 7 4.1550 -5.3519 -0.0247 12 6 4.2089 -6.8159 -0.0306 13 6 5.6692 -7.2723 -0.0325 14 1 6.1456 -6.9700 0.9002 15 7 6.3717 -6.6574 -1.1614 16 6 7.7283 -6.4789 -1.1086 17 1 8.2804 -6.7912 -0.2344 18 6 8.3939 -5.8958 -2.1780 19 7 7.7210 -5.5148 -3.2431 20 14 10.2444 -5.6517 -2.1057 21 1 10.9114 -6.9685 -1.9431 22 1 10.7092 -5.0140 -3.3636 23 1 10.5840 -4.7792 -0.9530 24 6 5.7272 -8.7955 -0.1643 25 6 4.9936 -9.4378 1.0147 26 6 5.0585 -9.2200 -1.4734 27 7 1.8048 -2.5182 -0.0130 28 7 2.1978 -1.1735 -0.0058 29 1 -0.3633 -0.0050 1.0277 30 1 -0.3633 -0.8875 -0.5182 31 1 -0.3633 0.8925 -0.5095 32 1 1.6692 2.1124 -0.0004 33 1 4.1536 2.0649 0.0105 34 1 4.9765 -4.8363 -0.0215 35 1 3.7084 -7.2015 0.8576 36 1 3.7092 -7.1943 -0.9223 37 1 5.8758 -6.3765 -1.9464 38 1 8.1860 -5.1068 -3.9904 39 1 6.7675 -9.1208 -0.1652 40 1 5.0352 -10.5230 0.9211 41 1 5.4699 -9.1355 1.9474 42 1 3.9532 -9.1126 1.0161 43 1 5.5811 -8.7624 -2.3133 44 1 5.0994 -10.3052 -1.5671 45 1 4.0182 -8.8947 -1.4720 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319958219.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:44 Heat of formation + Delta-G solvation = 85.794325 kcal Electronic energy + Delta-G solvation = -28265.185228 eV Core-core repulsion = 24319.774706 eV Total energy + Delta-G solvation = -3945.410521 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.16099 -41.09862 -39.78496 -38.79853 -36.38466 -35.39333 -35.04903 -33.01412 -32.22815 -32.18787 -29.51549 -29.38323 -27.90426 -26.69057 -25.38828 -25.19257 -23.96080 -23.04816 -21.60411 -20.29831 -19.75342 -19.36241 -19.09860 -18.18699 -18.05245 -17.43972 -16.81746 -16.58048 -16.29035 -15.74680 -15.46265 -15.22262 -14.98587 -14.88043 -14.59299 -14.45983 -14.37034 -14.12349 -13.82501 -13.81945 -13.64813 -13.34403 -12.82307 -12.78407 -12.70342 -12.64479 -12.53304 -12.20460 -12.13119 -11.87886 -11.72285 -11.58188 -11.49437 -11.18425 -11.09715 -10.97642 -10.84410 -10.20170 -9.94879 -8.96314 -7.88240 -5.16365 -0.76997 -0.52393 0.53685 0.55457 1.49124 1.51809 1.56924 1.64494 1.89643 2.16298 2.30477 2.59625 2.84426 3.20269 3.30761 3.46370 3.81879 3.86162 3.88673 4.09114 4.22479 4.27455 4.32366 4.42871 4.44357 4.49555 4.52956 4.55746 4.64565 4.72051 4.89837 4.93608 4.95849 5.06657 5.12277 5.12807 5.21636 5.24774 5.27296 5.40237 5.56009 5.61975 5.68712 6.10605 6.29552 6.31435 6.57785 6.83184 7.39282 8.11466 8.35701 9.34398 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.010853 B = 0.003461 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.338262 B = 8088.160626 C =10197.055184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.167 3.833 3 C -0.187 4.187 4 C 0.220 3.780 5 N -0.495 5.495 6 C 0.426 3.574 7 N -0.535 5.535 8 C 0.224 3.776 9 C 0.607 3.393 10 O -0.544 6.544 11 N -0.680 5.680 12 C 0.116 3.884 13 C 0.170 3.830 14 H 0.056 0.944 15 N -0.726 5.726 16 C -0.232 4.232 17 H 0.077 0.923 18 C -0.070 4.070 19 N -0.966 5.966 20 Si 0.966 3.034 21 H -0.279 1.279 22 H -0.301 1.301 23 H -0.280 1.280 24 C -0.104 4.104 25 C -0.141 4.141 26 C -0.136 4.136 27 N -0.291 5.291 28 N -0.328 5.328 29 H 0.109 0.891 30 H 0.064 0.936 31 H 0.142 0.858 32 H 0.239 0.761 33 H 0.246 0.754 34 H 0.416 0.584 35 H 0.095 0.905 36 H 0.068 0.932 37 H 0.372 0.628 38 H 0.247 0.753 39 H 0.056 0.944 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.032 0.968 44 H 0.060 0.940 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.620 15.449 9.760 24.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.052 3.948 3 C -0.210 4.210 4 C 0.038 3.962 5 N -0.212 5.212 6 C 0.067 3.933 7 N -0.270 5.270 8 C -0.059 4.059 9 C 0.387 3.613 10 O -0.420 6.420 11 N -0.331 5.331 12 C -0.007 4.007 13 C 0.061 3.939 14 H 0.074 0.926 15 N -0.366 5.366 16 C -0.364 4.364 17 H 0.095 0.905 18 C -0.262 4.262 19 N -0.617 5.617 20 Si 0.796 3.204 21 H -0.205 1.205 22 H -0.228 1.228 23 H -0.207 1.207 24 C -0.126 4.126 25 C -0.199 4.199 26 C -0.193 4.193 27 N -0.126 5.126 28 N -0.111 5.111 29 H 0.127 0.873 30 H 0.083 0.917 31 H 0.160 0.840 32 H 0.256 0.744 33 H 0.262 0.738 34 H 0.254 0.746 35 H 0.113 0.887 36 H 0.086 0.914 37 H 0.204 0.796 38 H 0.056 0.944 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.051 0.949 44 H 0.079 0.921 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.578 14.113 9.824 23.203 hybrid contribution 0.842 0.417 -0.785 1.225 sum -14.736 14.531 9.040 22.583 Atomic orbital electron populations 1.21228 0.83819 1.06485 1.05959 1.22035 0.98765 0.81049 0.92993 1.22639 0.94960 0.98798 1.04613 1.24777 0.93344 0.95524 0.82538 1.68214 1.37356 0.95603 1.20009 1.22894 0.79265 0.93875 0.97315 1.70776 1.29197 0.98124 1.28904 1.24009 0.86486 0.96673 0.98749 1.16423 0.84535 0.82421 0.77903 1.90768 1.34146 1.65553 1.51523 1.45820 1.07729 1.08943 1.70585 1.22009 0.98468 0.77240 1.02994 1.20699 0.89290 0.92510 0.91400 0.92602 1.42518 1.04517 1.72081 1.17478 1.19502 0.84953 1.31396 1.00529 0.90494 1.25426 1.01588 1.02526 0.96673 1.69822 1.35852 1.48637 1.07389 0.85329 0.81272 0.77685 0.76161 1.20540 1.22767 1.20652 1.21586 0.99584 0.95582 0.95822 1.21856 1.00282 1.00757 0.97029 1.21711 0.99797 1.00521 0.97275 1.78632 1.19275 0.84608 1.30101 1.49151 1.09154 1.06457 1.46292 0.87299 0.91680 0.83973 0.74429 0.73832 0.74621 0.88699 0.91357 0.79585 0.94438 0.92586 0.91752 0.92232 0.92006 0.94927 0.92147 0.92641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.96 10.13 71.24 0.72 -0.24 16 2 C 0.17 2.56 6.86 41.29 0.28 2.84 16 3 C -0.19 -1.12 9.72 22.15 0.22 -0.91 16 4 C 0.22 2.42 11.27 85.25 0.96 3.38 16 5 N -0.49 -13.17 10.48 -197.54 -2.07 -15.24 16 6 C 0.43 14.55 8.99 261.57 2.35 16.90 16 7 N -0.53 -22.12 10.89 -192.61 -2.10 -24.22 16 8 C 0.22 9.11 7.92 137.39 1.09 10.20 16 9 C 0.61 25.08 7.84 86.87 0.68 25.76 16 10 O -0.54 -23.75 17.07 -3.79 -0.06 -23.82 16 11 N -0.68 -27.10 5.39 -465.69 -2.51 -29.61 16 12 C 0.12 4.18 4.51 86.38 0.39 4.57 16 13 C 0.17 6.56 2.27 44.99 0.10 6.66 16 14 H 0.06 2.17 8.08 -2.39 -0.02 2.15 16 15 N -0.73 -35.69 3.80 -322.95 -1.23 -36.92 16 16 C -0.23 -12.66 9.93 84.03 0.83 -11.83 16 17 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 18 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 19 N -0.97 -60.12 13.06 21.65 0.28 -59.83 16 20 Si 0.97 47.08 29.55 68.60 2.03 49.10 16 21 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 22 H -0.30 -14.98 7.11 99.48 0.71 -14.27 16 23 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 24 C -0.10 -3.53 2.91 -10.79 -0.03 -3.56 16 25 C -0.14 -3.66 8.84 71.98 0.64 -3.02 16 26 C -0.14 -4.65 8.69 71.98 0.63 -4.03 16 27 N -0.29 -10.60 12.67 -52.60 -0.67 -11.26 16 28 N -0.33 -9.51 3.91 -185.76 -0.73 -10.24 16 29 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.14 -0.13 8.09 -2.38 -0.02 -0.14 16 32 H 0.24 -1.64 8.06 -2.91 -0.02 -1.66 16 33 H 0.25 -0.14 8.06 -2.91 -0.02 -0.16 16 34 H 0.42 18.01 7.81 -92.71 -0.72 17.28 16 35 H 0.10 3.00 6.71 -2.39 -0.02 2.98 16 36 H 0.07 2.56 6.17 -2.39 -0.01 2.55 16 37 H 0.37 20.31 7.80 -92.71 -0.72 19.59 16 38 H 0.25 15.14 8.31 -92.70 -0.77 14.36 16 39 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.06 1.50 6.54 -2.39 -0.02 1.49 16 43 H 0.03 1.34 7.60 -2.39 -0.02 1.32 16 44 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.05 1.78 6.32 -2.39 -0.02 1.76 16 Total: -1.00 -86.17 379.74 1.87 -84.30 By element: Atomic # 1 Polarization: 34.96 SS G_CDS: -0.40 Total: 34.56 kcal Atomic # 6 Polarization: 33.86 SS G_CDS: 9.32 Total: 43.18 kcal Atomic # 7 Polarization: -178.31 SS G_CDS: -9.01 Total: -187.32 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -0.06 Total: -23.82 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.10 kcal Total: -86.17 1.87 -84.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319958219.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.095 kcal (2) G-P(sol) polarization free energy of solvation -86.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds