Wall clock time and date at job start Tue Mar 31 2020 16:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36930 * 119.99961 * 2 1 4 4 H 1.07994 * 120.00128 * 154.24496 * 3 2 1 5 5 C 1.38813 * 120.00281 * 334.24376 * 3 2 1 6 6 N 1.31617 * 120.00074 * 352.39658 * 5 3 2 7 7 Si 1.86798 * 120.00196 * 172.66924 * 5 3 2 8 8 H 1.48505 * 109.47290 * 0.02562 * 7 5 3 9 9 H 1.48505 * 109.47196 * 120.00365 * 7 5 3 10 10 H 1.48500 * 109.47574 * 240.00243 * 7 5 3 11 11 C 1.46499 * 119.99827 * 180.02562 * 2 1 3 12 12 C 1.52997 * 109.47097 * 264.25616 * 11 2 1 13 13 H 1.09001 * 109.87176 * 306.54504 * 12 11 2 14 14 C 1.54326 * 109.88385 * 67.71774 * 12 11 2 15 15 C 1.55150 * 102.94135 * 141.61280 * 14 12 11 16 16 C 1.54914 * 101.58251 * 324.49634 * 15 14 12 17 17 N 1.47014 * 109.88411 * 185.52823 * 12 11 2 18 18 C 1.34783 * 125.64879 * 61.67559 * 17 12 11 19 19 O 1.21280 * 120.00059 * 4.55669 * 18 17 12 20 20 C 1.50704 * 119.99713 * 184.55580 * 18 17 12 21 21 H 1.09005 * 112.50627 * 309.67183 * 20 18 17 22 22 C 1.52883 * 113.16258 * 179.77200 * 20 18 17 23 23 C 1.51437 * 84.73781 * 244.77413 * 22 20 18 24 24 C 1.38965 * 145.50074 * 179.97438 * 23 22 20 25 25 C 1.37935 * 120.36089 * 179.97438 * 24 23 22 26 26 C 1.38467 * 120.14563 * 0.06545 * 25 24 23 27 27 F 1.35103 * 120.14594 * 179.97438 * 26 25 24 28 28 C 1.38390 * 119.69993 * 359.97438 * 26 25 24 29 29 C 1.38204 * 120.10065 * 359.97438 * 28 26 25 30 30 H 1.09001 * 109.47226 * 93.82617 * 1 2 3 31 31 H 1.08998 * 109.47266 * 213.82160 * 1 2 3 32 32 H 1.08997 * 109.47187 * 333.83088 * 1 2 3 33 33 H 0.97000 * 120.00897 * 179.97438 * 6 5 3 34 34 H 1.08998 * 109.47592 * 24.25753 * 11 2 1 35 35 H 1.09003 * 109.46913 * 144.25621 * 11 2 1 36 36 H 1.09001 * 110.72060 * 259.97794 * 14 12 11 37 37 H 1.08998 * 110.71558 * 23.24674 * 14 12 11 38 38 H 1.09006 * 111.00555 * 206.42582 * 15 14 12 39 39 H 1.09001 * 111.04301 * 82.58891 * 15 14 12 40 40 H 1.08997 * 110.36674 * 278.16877 * 16 15 14 41 41 H 1.09004 * 110.36305 * 155.84790 * 16 15 14 42 42 H 1.09000 * 113.98733 * 358.71981 * 22 20 18 43 43 H 1.09000 * 113.98964 * 130.82910 * 22 20 18 44 44 H 1.08005 * 119.81903 * 359.97057 * 24 23 22 45 45 H 1.08000 * 119.92777 * 180.02562 * 25 24 23 46 46 H 1.08000 * 119.94919 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1491 1.2323 0.4064 5 6 1.5591 2.3283 -0.5224 6 7 0.4060 2.2443 -1.1514 7 14 2.4045 3.9839 -0.3393 8 1 3.6826 3.8085 0.3963 9 1 2.6815 4.5497 -1.6842 10 1 1.5219 4.9099 0.4149 11 6 2.1975 -1.2687 -0.0006 12 6 2.5775 -1.6389 1.4345 13 1 3.1090 -0.8103 1.9025 14 6 1.3072 -1.9755 2.2436 15 6 1.7647 -3.1637 3.1303 16 6 2.7333 -3.9079 2.1775 17 7 3.4253 -2.8399 1.4333 18 6 4.6353 -2.9467 0.8492 19 8 5.1471 -1.9761 0.3327 20 6 5.3522 -4.2723 0.8381 21 1 5.4015 -4.7283 1.8269 22 6 6.7068 -4.2174 0.1314 23 6 6.0690 -5.1636 -0.8642 24 6 6.2564 -5.8958 -2.0303 25 6 5.2321 -6.6641 -2.5433 26 6 4.0073 -6.7097 -1.8991 27 9 3.0038 -7.4618 -2.4019 28 6 3.8157 -5.9816 -0.7380 29 6 4.8432 -5.2130 -0.2243 30 1 -0.3634 -0.0686 -1.0254 31 1 -0.3634 -0.8537 0.5720 32 1 -0.3633 0.9223 0.4532 33 1 -0.0070 3.0426 -1.5161 34 1 1.5678 -2.0517 -0.4231 35 1 3.1015 -1.1661 -0.6009 36 1 1.0064 -1.1281 2.8596 37 1 0.4968 -2.2787 1.5807 38 1 0.9199 -3.7969 3.4014 39 1 2.2864 -2.8101 4.0197 40 1 2.1755 -4.5472 1.4931 41 1 3.4498 -4.4973 2.7496 42 1 6.9519 -3.2388 -0.2815 43 1 7.5230 -4.6595 0.7028 44 1 7.2093 -5.8631 -2.5377 45 1 5.3855 -7.2307 -3.4499 46 1 2.8622 -6.0146 -0.2320 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328765302.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:45 Heat of formation + Delta-G solvation = 16.945189 kcal Electronic energy + Delta-G solvation = -29035.634031 eV Core-core repulsion = 25035.025275 eV Total energy + Delta-G solvation = -4000.608757 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 2.51 seconds Orbital eigenvalues (eV) -49.05863 -41.23389 -39.40159 -37.35521 -35.25596 -35.09307 -31.74941 -31.31884 -30.99780 -29.12513 -27.62545 -26.03514 -25.49655 -25.06288 -23.16416 -22.31349 -21.14856 -20.99548 -20.16421 -18.64921 -17.61292 -17.27505 -16.75742 -16.49997 -16.03759 -15.72855 -15.42031 -15.26039 -14.69563 -14.48628 -13.97576 -13.92326 -13.64683 -13.44391 -13.37033 -13.15188 -12.93038 -12.70575 -12.47126 -12.01704 -11.97051 -11.91907 -11.76290 -11.59067 -11.17775 -11.01744 -10.84716 -10.79641 -10.77804 -10.61877 -10.33581 -10.09346 -9.86850 -9.79575 -9.63245 -9.11961 -8.63301 -8.54536 -8.32467 -6.60773 -5.66713 -3.13821 0.87004 0.97150 2.68906 3.10428 3.34911 3.42890 3.50228 3.53815 3.68548 4.04796 4.21960 4.33956 4.51334 4.58665 4.67727 4.71226 4.90165 5.03921 5.05571 5.12600 5.26324 5.39240 5.45549 5.50085 5.53422 5.57088 5.67413 5.71085 5.76670 5.84744 5.87360 5.90535 5.98115 6.04281 6.24513 6.26199 6.38526 6.50211 6.57428 6.64428 6.77645 6.88379 7.07002 7.44391 7.74949 7.77971 7.91443 8.36388 8.51438 9.33304 9.94163 10.44004 11.39824 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012871 B = 0.003374 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.921282 B = 8295.936012 C = 8529.806801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.596 5.596 3 C -0.248 4.248 4 H 0.068 0.932 5 C 0.002 3.998 6 N -0.911 5.911 7 Si 0.904 3.096 8 H -0.277 1.277 9 H -0.290 1.290 10 H -0.290 1.290 11 C 0.147 3.853 12 C 0.115 3.885 13 H 0.077 0.923 14 C -0.115 4.115 15 C -0.136 4.136 16 C 0.100 3.900 17 N -0.608 5.608 18 C 0.537 3.463 19 O -0.521 6.521 20 C -0.059 4.059 21 H 0.117 0.883 22 C -0.058 4.058 23 C -0.124 4.124 24 C -0.072 4.072 25 C -0.146 4.146 26 C 0.098 3.902 27 F -0.137 7.137 28 C -0.115 4.115 29 C -0.094 4.094 30 H 0.015 0.985 31 H -0.006 1.006 32 H 0.058 0.942 33 H 0.251 0.749 34 H 0.034 0.966 35 H 0.054 0.946 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.117 0.883 43 H 0.102 0.898 44 H 0.130 0.870 45 H 0.138 0.862 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.279 -20.982 6.056 23.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.319 5.319 3 C -0.378 4.378 4 H 0.086 0.914 5 C -0.196 4.196 6 N -0.557 5.557 7 Si 0.734 3.266 8 H -0.202 1.202 9 H -0.217 1.217 10 H -0.217 1.217 11 C 0.019 3.981 12 C 0.010 3.990 13 H 0.095 0.905 14 C -0.153 4.153 15 C -0.174 4.174 16 C -0.023 4.023 17 N -0.342 5.342 18 C 0.324 3.676 19 O -0.396 6.396 20 C -0.080 4.080 21 H 0.135 0.865 22 C -0.095 4.095 23 C -0.125 4.125 24 C -0.090 4.090 25 C -0.165 4.165 26 C 0.079 3.921 27 F -0.115 7.115 28 C -0.134 4.134 29 C -0.094 4.094 30 H 0.033 0.967 31 H 0.012 0.988 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.135 0.865 43 H 0.120 0.880 44 H 0.148 0.852 45 H 0.156 0.844 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 8.467 -20.336 5.613 22.732 hybrid contribution -0.049 0.651 -0.105 0.661 sum 8.418 -19.685 5.508 22.106 Atomic orbital electron populations 1.20850 0.82646 0.97105 0.97587 1.43796 1.01698 1.00402 1.86004 1.19268 0.99609 0.86008 1.32881 0.91389 1.25078 0.97650 0.98738 0.98108 1.70060 1.18027 1.27504 1.40121 0.86182 0.78939 0.84145 0.77335 1.20242 1.21704 1.21722 1.20963 0.96398 0.88611 0.92152 1.22624 0.89602 0.85929 1.00801 0.90506 1.22638 0.97162 0.97691 0.97794 1.22810 0.98760 0.97914 0.97880 1.22308 0.95290 0.90637 0.94090 1.48614 1.17414 1.14728 1.53447 1.19566 0.80326 0.89227 0.78496 1.90762 1.65293 1.38699 1.44852 1.21349 0.95290 0.92307 0.99094 0.86485 1.21773 0.94953 0.99654 0.93099 1.22412 0.96926 0.97676 0.95438 1.20356 0.98946 0.95141 0.94534 1.20966 0.92022 1.02081 1.01436 1.17304 0.85764 0.94671 0.94354 1.91513 1.59373 1.73919 1.86736 1.20044 0.99742 0.97868 0.95740 1.20982 0.94343 0.96413 0.97698 0.96684 0.98772 0.92325 0.93894 0.94745 0.92759 0.90116 0.90601 0.90248 0.90897 0.91666 0.91166 0.86475 0.88015 0.85169 0.84378 0.84909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.04 8.73 59.85 0.52 4.57 16 2 N -0.60 -15.46 2.80 -181.13 -0.51 -15.97 16 3 C -0.25 -7.11 9.64 -15.06 -0.15 -7.25 16 4 H 0.07 1.98 7.84 -52.49 -0.41 1.57 16 5 C 0.00 0.05 5.15 -17.43 -0.09 -0.04 16 6 N -0.91 -27.28 10.64 55.49 0.59 -26.69 16 7 Si 0.90 22.72 29.56 -169.99 -5.02 17.69 16 8 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 9 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 10 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 11 C 0.15 3.29 5.13 -4.04 -0.02 3.27 16 12 C 0.12 2.10 3.05 -66.96 -0.20 1.90 16 13 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 14 C -0.11 -1.71 5.64 -24.90 -0.14 -1.85 16 15 C -0.14 -1.45 7.08 -24.58 -0.17 -1.62 16 16 C 0.10 1.08 6.65 -2.53 -0.02 1.06 16 17 N -0.61 -9.18 3.06 -163.02 -0.50 -9.68 16 18 C 0.54 8.51 7.08 -10.98 -0.08 8.44 16 19 O -0.52 -10.58 14.82 5.56 0.08 -10.50 16 20 C -0.06 -0.67 3.35 -96.56 -0.32 -0.99 16 21 H 0.12 0.98 7.47 -51.93 -0.39 0.59 16 22 C -0.06 -0.60 7.91 -27.58 -0.22 -0.81 16 23 C -0.12 -1.38 7.32 -107.55 -0.79 -2.17 16 24 C -0.07 -0.71 10.04 -39.42 -0.40 -1.11 16 25 C -0.15 -1.47 10.01 -39.61 -0.40 -1.87 16 26 C 0.10 1.14 7.31 -39.44 -0.29 0.85 16 27 F -0.14 -1.65 17.27 2.25 0.04 -1.61 16 28 C -0.12 -1.33 10.02 -39.54 -0.40 -1.73 16 29 C -0.09 -1.10 7.05 -104.56 -0.74 -1.84 16 30 H 0.01 0.40 7.80 -51.93 -0.41 0.00 16 31 H -0.01 -0.13 6.12 -51.93 -0.32 -0.45 16 32 H 0.06 1.57 6.77 -51.93 -0.35 1.22 16 33 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 34 H 0.03 0.73 7.90 -51.93 -0.41 0.32 16 35 H 0.05 1.37 6.80 -51.93 -0.35 1.02 16 36 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.08 1.17 6.34 -51.93 -0.33 0.84 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.66 8.02 -51.93 -0.42 0.25 16 41 H 0.07 0.58 7.31 -51.93 -0.38 0.20 16 42 H 0.12 1.43 7.02 -51.93 -0.36 1.07 16 43 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.13 0.97 8.06 -52.48 -0.42 0.54 16 45 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 46 H 0.13 1.37 7.93 -52.49 -0.42 0.95 16 LS Contribution 373.08 15.07 5.62 5.62 Total: -1.00 -33.75 373.08 -10.22 -43.97 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -6.64 Total: -1.62 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -3.89 Total: -1.20 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: -0.42 Total: -52.34 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.08 Total: -10.50 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.75 -10.22 -43.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328765302.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.916 kcal (2) G-P(sol) polarization free energy of solvation -33.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.51 seconds