Wall clock time and date at job start Tue Mar 31 2020 16:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36930 * 119.99961 * 2 1 4 4 H 1.07994 * 120.00128 * 154.24496 * 3 2 1 5 5 C 1.38813 * 120.00281 * 334.24376 * 3 2 1 6 6 N 1.31617 * 120.00074 * 352.39658 * 5 3 2 7 7 Si 1.86798 * 120.00196 * 172.66924 * 5 3 2 8 8 H 1.48505 * 109.47290 * 0.02562 * 7 5 3 9 9 H 1.48505 * 109.47196 * 120.00365 * 7 5 3 10 10 H 1.48500 * 109.47574 * 240.00243 * 7 5 3 11 11 C 1.46499 * 119.99827 * 180.02562 * 2 1 3 12 12 C 1.52997 * 109.47097 * 264.25616 * 11 2 1 13 13 H 1.09001 * 109.87176 * 306.54504 * 12 11 2 14 14 C 1.54326 * 109.88385 * 67.71774 * 12 11 2 15 15 C 1.55150 * 102.94135 * 141.61280 * 14 12 11 16 16 C 1.54914 * 101.58251 * 324.49634 * 15 14 12 17 17 N 1.47014 * 109.88411 * 185.52823 * 12 11 2 18 18 C 1.34783 * 125.64879 * 61.67559 * 17 12 11 19 19 O 1.21280 * 120.00059 * 4.55669 * 18 17 12 20 20 C 1.50704 * 119.99713 * 184.55580 * 18 17 12 21 21 H 1.09005 * 112.50627 * 309.67183 * 20 18 17 22 22 C 1.52883 * 113.16258 * 179.77200 * 20 18 17 23 23 C 1.51437 * 84.73781 * 244.77413 * 22 20 18 24 24 C 1.38965 * 145.50074 * 179.97438 * 23 22 20 25 25 C 1.37935 * 120.36089 * 179.97438 * 24 23 22 26 26 C 1.38467 * 120.14563 * 0.06545 * 25 24 23 27 27 F 1.35103 * 120.14594 * 179.97438 * 26 25 24 28 28 C 1.38390 * 119.69993 * 359.97438 * 26 25 24 29 29 C 1.38204 * 120.10065 * 359.97438 * 28 26 25 30 30 H 1.09001 * 109.47226 * 93.82617 * 1 2 3 31 31 H 1.08998 * 109.47266 * 213.82160 * 1 2 3 32 32 H 1.08997 * 109.47187 * 333.83088 * 1 2 3 33 33 H 0.97000 * 120.00897 * 179.97438 * 6 5 3 34 34 H 1.08998 * 109.47592 * 24.25753 * 11 2 1 35 35 H 1.09003 * 109.46913 * 144.25621 * 11 2 1 36 36 H 1.09001 * 110.72060 * 259.97794 * 14 12 11 37 37 H 1.08998 * 110.71558 * 23.24674 * 14 12 11 38 38 H 1.09006 * 111.00555 * 206.42582 * 15 14 12 39 39 H 1.09001 * 111.04301 * 82.58891 * 15 14 12 40 40 H 1.08997 * 110.36674 * 278.16877 * 16 15 14 41 41 H 1.09004 * 110.36305 * 155.84790 * 16 15 14 42 42 H 1.09000 * 113.98733 * 358.71981 * 22 20 18 43 43 H 1.09000 * 113.98964 * 130.82910 * 22 20 18 44 44 H 1.08005 * 119.81903 * 359.97057 * 24 23 22 45 45 H 1.08000 * 119.92777 * 180.02562 * 25 24 23 46 46 H 1.08000 * 119.94919 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1491 1.2323 0.4064 5 6 1.5591 2.3283 -0.5224 6 7 0.4060 2.2443 -1.1514 7 14 2.4045 3.9839 -0.3393 8 1 3.6826 3.8085 0.3963 9 1 2.6815 4.5497 -1.6842 10 1 1.5219 4.9099 0.4149 11 6 2.1975 -1.2687 -0.0006 12 6 2.5775 -1.6389 1.4345 13 1 3.1090 -0.8103 1.9025 14 6 1.3072 -1.9755 2.2436 15 6 1.7647 -3.1637 3.1303 16 6 2.7333 -3.9079 2.1775 17 7 3.4253 -2.8399 1.4333 18 6 4.6353 -2.9467 0.8492 19 8 5.1471 -1.9761 0.3327 20 6 5.3522 -4.2723 0.8381 21 1 5.4015 -4.7283 1.8269 22 6 6.7068 -4.2174 0.1314 23 6 6.0690 -5.1636 -0.8642 24 6 6.2564 -5.8958 -2.0303 25 6 5.2321 -6.6641 -2.5433 26 6 4.0073 -6.7097 -1.8991 27 9 3.0038 -7.4618 -2.4019 28 6 3.8157 -5.9816 -0.7380 29 6 4.8432 -5.2130 -0.2243 30 1 -0.3634 -0.0686 -1.0254 31 1 -0.3634 -0.8537 0.5720 32 1 -0.3633 0.9223 0.4532 33 1 -0.0070 3.0426 -1.5161 34 1 1.5678 -2.0517 -0.4231 35 1 3.1015 -1.1661 -0.6009 36 1 1.0064 -1.1281 2.8596 37 1 0.4968 -2.2787 1.5807 38 1 0.9199 -3.7969 3.4014 39 1 2.2864 -2.8101 4.0197 40 1 2.1755 -4.5472 1.4931 41 1 3.4498 -4.4973 2.7496 42 1 6.9519 -3.2388 -0.2815 43 1 7.5230 -4.6595 0.7028 44 1 7.2093 -5.8631 -2.5377 45 1 5.3855 -7.2307 -3.4499 46 1 2.8622 -6.0146 -0.2320 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328765302.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:42 Heat of formation + Delta-G solvation = -1.988855 kcal Electronic energy + Delta-G solvation = -29036.455073 eV Core-core repulsion = 25035.025275 eV Total energy + Delta-G solvation = -4001.429798 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.94045 -42.19704 -40.54524 -38.65543 -37.14175 -36.01816 -33.60706 -32.60897 -31.84771 -30.71096 -28.50838 -28.04065 -26.83565 -26.40413 -24.27436 -23.32659 -22.77837 -22.05375 -21.39195 -19.81664 -18.80834 -18.43608 -18.29913 -17.63735 -17.26786 -16.77084 -16.60076 -16.46496 -16.19587 -15.64275 -15.39727 -15.19463 -14.95011 -14.85692 -14.65439 -14.33779 -14.17601 -13.83045 -13.73010 -13.49345 -13.12426 -13.05366 -12.84693 -12.83996 -12.75451 -12.57273 -12.40040 -12.36633 -12.18931 -12.02624 -11.94605 -11.64430 -11.59852 -11.50153 -10.95125 -10.66925 -9.98911 -9.72934 -9.49363 -8.72108 -7.88862 -5.38992 0.03239 0.15617 1.40322 1.41914 1.51467 1.53471 1.95784 2.47019 2.51332 2.79997 3.23419 3.25896 3.38336 3.49185 3.53876 3.65661 3.78170 3.95258 3.96449 4.03537 4.17756 4.29043 4.35161 4.39983 4.46164 4.51292 4.60103 4.71532 4.81714 4.84318 4.88132 4.92477 4.97451 5.04831 5.05847 5.09149 5.12150 5.17155 5.18968 5.30166 5.41746 5.49871 5.56298 5.57631 5.68024 5.83820 6.31067 6.58964 7.12585 7.15544 7.81977 8.25727 9.15367 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012871 B = 0.003374 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.921282 B = 8295.936012 C = 8529.806801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.611 5.611 3 C -0.260 4.260 4 H 0.053 0.947 5 C -0.047 4.047 6 N -0.938 5.938 7 Si 0.968 3.032 8 H -0.274 1.274 9 H -0.290 1.290 10 H -0.281 1.281 11 C 0.155 3.845 12 C 0.126 3.874 13 H 0.038 0.962 14 C -0.112 4.112 15 C -0.120 4.120 16 C 0.094 3.906 17 N -0.608 5.608 18 C 0.528 3.472 19 O -0.579 6.579 20 C -0.048 4.048 21 H 0.156 0.844 22 C -0.054 4.054 23 C -0.135 4.135 24 C -0.075 4.075 25 C -0.144 4.144 26 C 0.079 3.921 27 F -0.144 7.144 28 C -0.123 4.123 29 C -0.109 4.109 30 H -0.012 1.012 31 H 0.035 0.965 32 H 0.034 0.966 33 H 0.250 0.750 34 H 0.043 0.957 35 H 0.014 0.986 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.112 0.888 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.107 0.893 42 H 0.091 0.909 43 H 0.139 0.861 44 H 0.156 0.844 45 H 0.160 0.840 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.924 -23.394 7.675 26.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.335 5.335 3 C -0.390 4.390 4 H 0.071 0.929 5 C -0.242 4.242 6 N -0.584 5.584 7 Si 0.796 3.204 8 H -0.199 1.199 9 H -0.217 1.217 10 H -0.207 1.207 11 C 0.027 3.973 12 C 0.020 3.980 13 H 0.057 0.943 14 C -0.150 4.150 15 C -0.157 4.157 16 C -0.027 4.027 17 N -0.341 5.341 18 C 0.317 3.683 19 O -0.459 6.459 20 C -0.068 4.068 21 H 0.174 0.826 22 C -0.091 4.091 23 C -0.135 4.135 24 C -0.093 4.093 25 C -0.163 4.163 26 C 0.060 3.940 27 F -0.122 7.122 28 C -0.142 4.142 29 C -0.109 4.109 30 H 0.006 0.994 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.033 0.967 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.131 0.869 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.125 0.875 42 H 0.110 0.890 43 H 0.157 0.843 44 H 0.173 0.827 45 H 0.178 0.822 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 9.106 -22.812 7.266 25.614 hybrid contribution -0.225 1.347 -0.672 1.522 sum 8.881 -21.465 6.593 24.147 Atomic orbital electron populations 1.20612 0.82044 0.97565 0.96297 1.43964 1.02248 1.00903 1.86394 1.19368 0.99320 0.87535 1.32765 0.92893 1.25797 0.98410 1.01953 0.98064 1.70208 1.19095 1.28225 1.40899 0.85198 0.78107 0.79983 0.77148 1.19885 1.21695 1.20695 1.20945 0.94327 0.87423 0.94558 1.22105 0.91504 0.86735 0.97694 0.94346 1.22543 0.95035 0.99469 0.97990 1.22818 0.99771 0.96064 0.97094 1.22669 0.96076 0.89677 0.94281 1.48713 1.17129 1.14747 1.53547 1.20501 0.80280 0.90352 0.77168 1.90736 1.66801 1.41149 1.47165 1.21374 0.94870 0.89344 1.01217 0.82629 1.21812 0.95658 0.98467 0.93134 1.22669 0.97025 0.97832 0.95957 1.20673 0.99999 0.94432 0.94180 1.21279 0.91384 1.01744 1.01886 1.17548 0.86282 0.95268 0.94922 1.91493 1.59735 1.74149 1.86852 1.20202 1.00201 0.97890 0.95916 1.21047 0.94748 0.96905 0.98231 0.99408 0.94662 0.94728 0.94050 0.93864 0.96749 0.91134 0.90799 0.86924 0.90013 0.90366 0.87454 0.89032 0.84316 0.82683 0.82209 0.83979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.13 8.73 127.77 1.11 10.24 16 2 N -0.61 -32.94 2.80 -726.96 -2.04 -34.97 16 3 C -0.26 -15.51 9.64 84.03 0.81 -14.70 16 4 H 0.05 3.26 7.84 -2.91 -0.02 3.24 16 5 C -0.05 -2.80 5.15 84.86 0.44 -2.37 16 6 N -0.94 -57.63 10.64 21.65 0.23 -57.40 16 7 Si 0.97 47.86 29.56 68.60 2.03 49.89 16 8 H -0.27 -13.26 7.11 99.48 0.71 -12.55 16 9 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 10 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 11 C 0.15 7.19 5.13 86.38 0.44 7.64 16 12 C 0.13 4.67 3.05 45.34 0.14 4.80 16 13 H 0.04 1.71 8.14 -2.39 -0.02 1.70 16 14 C -0.11 -3.20 5.64 31.78 0.18 -3.02 16 15 C -0.12 -2.11 7.08 31.99 0.23 -1.89 16 16 C 0.09 1.70 6.65 86.86 0.58 2.28 16 17 N -0.61 -17.87 3.06 -788.05 -2.41 -20.28 16 18 C 0.53 16.69 7.08 87.66 0.62 17.31 16 19 O -0.58 -24.78 14.82 -3.03 -0.04 -24.82 16 20 C -0.05 -0.97 3.35 -14.64 -0.05 -1.02 16 21 H 0.16 1.93 7.47 -2.38 -0.02 1.91 16 22 C -0.05 -1.02 7.91 30.04 0.24 -0.79 16 23 C -0.13 -2.76 7.32 -21.76 -0.16 -2.92 16 24 C -0.08 -1.33 10.04 22.37 0.22 -1.11 16 25 C -0.14 -2.64 10.01 22.25 0.22 -2.42 16 26 C 0.08 1.72 7.31 22.36 0.16 1.88 16 27 F -0.14 -3.32 17.27 44.97 0.78 -2.55 16 28 C -0.12 -2.66 10.02 22.30 0.22 -2.44 16 29 C -0.11 -2.35 7.05 -19.82 -0.14 -2.49 16 30 H -0.01 -0.69 7.80 -2.39 -0.02 -0.71 16 31 H 0.04 1.47 6.12 -2.39 -0.01 1.46 16 32 H 0.03 1.90 6.77 -2.39 -0.02 1.88 16 33 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 34 H 0.04 1.89 7.90 -2.39 -0.02 1.87 16 35 H 0.01 0.76 6.80 -2.39 -0.02 0.75 16 36 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.07 2.13 6.34 -2.39 -0.02 2.12 16 38 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 39 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.08 1.27 8.02 -2.39 -0.02 1.25 16 41 H 0.11 1.22 7.31 -2.38 -0.02 1.20 16 42 H 0.09 2.27 7.02 -2.39 -0.02 2.26 16 43 H 0.14 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.16 1.90 8.06 -2.91 -0.02 1.87 16 45 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 46 H 0.14 2.64 7.93 -2.91 -0.02 2.62 16 Total: -1.00 -78.94 373.08 4.80 -74.14 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: 0.99 Total: 7.00 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: 5.27 Total: 9.00 kcal Atomic # 7 Polarization: -108.44 SS G_CDS: -4.22 Total: -112.66 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.04 Total: -24.82 kcal Atomic # 9 Polarization: -3.32 SS G_CDS: 0.78 Total: -2.55 kcal Atomic # 14 Polarization: 47.86 SS G_CDS: 2.03 Total: 49.89 kcal Total: -78.94 4.80 -74.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328765302.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.150 kcal (2) G-P(sol) polarization free energy of solvation -78.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds