Wall clock time and date at job start Tue Mar 31 2020 18:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47025 * 2 1 4 4 C 1.52994 * 109.47025 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47306 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.46892 * 305.00508 * 5 4 3 7 7 C 1.52996 * 109.47530 * 184.99714 * 5 4 3 8 8 N 1.46498 * 109.47059 * 184.99929 * 7 5 4 9 9 C 1.36943 * 119.99752 * 179.72430 * 8 7 5 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 7 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 7 12 12 N 1.31624 * 119.99698 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00072 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47213 * 60.00246 * 13 11 9 15 15 H 1.48502 * 109.47317 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47081 * 299.99875 * 13 11 9 17 17 N 1.46506 * 109.46609 * 64.99913 * 5 4 3 18 18 C 1.34782 * 119.99726 * 274.99704 * 17 5 4 19 19 O 1.21567 * 119.99951 * 0.02562 * 18 17 5 20 20 C 1.47723 * 119.99338 * 179.97438 * 18 17 5 21 21 C 1.40112 * 120.35705 * 0.02562 * 20 18 17 22 22 N 1.31259 * 121.15039 * 179.97438 * 21 20 18 23 23 C 1.32715 * 121.80210 * 0.02562 * 22 21 20 24 24 N 1.37120 * 133.40649 * 179.97438 * 23 22 21 25 25 H 0.97001 * 126.58844 * 0.02562 * 24 23 22 26 26 N 1.40187 * 106.81674 * 180.02562 * 24 23 22 27 27 N 1.28665 * 109.51504 * 0.02562 * 26 24 23 28 28 C 1.35336 * 109.99742 * 359.97438 * 27 26 24 29 29 C 1.39436 * 120.34394 * 179.72591 * 20 18 17 30 30 H 1.09001 * 109.46772 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47619 * 300.00358 * 1 2 3 32 32 H 1.09003 * 109.47243 * 60.00697 * 1 2 3 33 33 H 1.09001 * 109.47619 * 239.99641 * 2 1 3 34 34 H 1.09003 * 109.47243 * 119.99303 * 2 1 3 35 35 H 1.08994 * 109.47070 * 59.99773 * 3 2 1 36 36 H 1.09003 * 109.46541 * 299.99733 * 3 2 1 37 37 H 1.09001 * 109.47619 * 59.99641 * 4 3 2 38 38 H 1.09003 * 109.47243 * 299.99303 * 4 3 2 39 39 H 1.09004 * 109.47066 * 65.00196 * 7 5 4 40 40 H 1.08994 * 109.46974 * 305.00344 * 7 5 4 41 41 H 0.97001 * 120.00384 * 0.02562 * 8 7 5 42 42 H 0.96999 * 119.99739 * 180.02562 * 12 11 9 43 43 H 0.97000 * 120.00390 * 95.00648 * 17 5 4 44 44 H 1.07997 * 119.42383 * 359.97438 * 21 20 18 45 45 H 1.07996 * 120.95261 * 0.02562 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8851 0.0000 6 1 3.6456 3.4236 -0.8423 7 6 5.6048 2.8869 -0.1250 8 7 6.1029 4.2594 -0.0058 9 6 7.4473 4.5089 -0.0814 10 1 8.1399 3.6943 -0.2333 11 6 7.9197 5.8087 0.0373 12 7 7.0755 6.8014 0.2229 13 14 9.7535 6.1491 -0.0665 14 1 10.2664 5.7000 -1.3858 15 1 9.9962 7.6058 0.0897 16 1 10.4557 5.4121 1.0147 17 7 3.6918 3.5407 1.2513 18 6 2.4744 4.1078 1.3655 19 8 1.6983 4.0747 0.4304 20 6 2.0829 4.7684 2.6275 21 6 2.9713 4.8103 3.7101 22 7 2.6398 5.3935 4.8383 23 6 1.4551 5.9673 5.0073 24 7 0.8693 6.6280 6.0563 25 1 1.2646 6.7984 6.9255 26 7 -0.4108 7.0100 5.6309 27 7 -0.5968 6.6159 4.4203 28 6 0.5034 5.9691 3.9699 29 6 0.8274 5.3622 2.7517 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5137 -0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 1.6766 1.9564 0.8899 36 1 1.6766 1.9563 -0.8901 37 1 3.9337 0.9286 -0.8891 38 1 3.9329 0.9290 0.8909 39 1 5.8903 2.4797 -1.0950 40 1 6.0350 2.2741 0.6671 41 1 5.4808 4.9910 0.1309 42 1 7.4056 7.7097 0.3054 43 1 4.3109 3.5669 1.9976 44 1 3.9459 4.3548 3.6146 45 1 0.1234 5.3495 1.9328 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329875282.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:11 Heat of formation + Delta-G solvation = 86.610586 kcal Electronic energy + Delta-G solvation = -28286.980818 eV Core-core repulsion = 24341.605693 eV Total energy + Delta-G solvation = -3945.375126 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.60993 -40.20359 -38.52093 -36.60516 -34.96268 -34.22580 -33.66042 -32.01473 -31.77410 -30.64818 -30.09468 -27.31250 -25.16731 -24.61499 -24.13501 -22.93265 -22.31372 -21.32890 -20.77248 -20.36709 -18.93748 -18.65219 -17.37532 -16.91868 -16.63350 -16.36759 -16.04027 -15.26757 -14.81330 -14.71322 -14.20682 -13.91808 -13.85854 -13.56651 -13.44523 -13.26065 -13.11224 -12.82727 -12.76862 -12.68351 -12.24716 -12.11083 -11.98081 -11.75410 -11.35689 -11.11485 -10.95473 -10.87625 -10.83673 -10.42605 -10.36643 -10.22420 -10.07838 -9.78134 -9.63717 -9.58924 -9.28698 -8.96739 -8.74996 -7.02248 -5.83282 -3.13490 -0.04590 0.42206 1.73241 1.80948 2.73881 3.11422 3.39651 3.44749 3.45654 3.55628 3.63523 3.98942 4.02419 4.39907 4.48681 4.51203 4.79178 4.84583 5.04136 5.07406 5.16806 5.36562 5.42566 5.42942 5.47904 5.50396 5.62401 5.79098 5.86049 5.86475 5.91834 5.94418 6.01077 6.12662 6.19198 6.25345 6.37735 6.38327 6.44162 6.58541 6.63439 6.83790 7.22182 7.48561 7.63044 7.66247 8.31159 8.34584 9.46531 10.01375 10.36512 11.38664 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.007460 B = 0.004080 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3752.646249 B = 6861.337370 C =10065.930460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.113 4.113 4 C -0.127 4.127 5 C 0.139 3.861 6 H 0.091 0.909 7 C 0.144 3.856 8 N -0.732 5.732 9 C -0.245 4.245 10 H 0.070 0.930 11 C -0.009 4.009 12 N -0.930 5.930 13 Si 0.907 3.093 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 N -0.701 5.701 18 C 0.570 3.430 19 O -0.530 6.530 20 C -0.199 4.199 21 C 0.221 3.779 22 N -0.488 5.488 23 C 0.294 3.706 24 N -0.484 5.484 25 H 0.454 0.546 26 N 0.014 4.986 27 N -0.192 5.192 28 C -0.076 4.076 29 C 0.082 3.918 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.035 0.965 40 H 0.025 0.975 41 H 0.386 0.614 42 H 0.256 0.744 43 H 0.402 0.598 44 H 0.182 0.818 45 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.802 -8.896 8.333 17.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.151 4.151 4 C -0.166 4.166 5 C 0.035 3.965 6 H 0.109 0.891 7 C 0.015 3.985 8 N -0.377 5.377 9 C -0.376 4.376 10 H 0.088 0.912 11 C -0.206 4.206 12 N -0.578 5.578 13 Si 0.738 3.262 14 H -0.212 1.212 15 H -0.217 1.217 16 H -0.212 1.212 17 N -0.352 5.352 18 C 0.355 3.645 19 O -0.408 6.408 20 C -0.208 4.208 21 C 0.047 3.953 22 N -0.202 5.202 23 C 0.049 3.951 24 N -0.210 5.210 25 H 0.302 0.698 26 N 0.031 4.969 27 N -0.073 5.073 28 C -0.202 4.202 29 C 0.051 3.949 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.053 0.947 40 H 0.043 0.957 41 H 0.220 0.780 42 H 0.066 0.934 43 H 0.238 0.762 44 H 0.198 0.802 45 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -13.972 -8.158 8.723 18.381 hybrid contribution 1.882 0.282 0.133 1.908 sum -12.089 -7.876 8.857 16.930 Atomic orbital electron populations 1.21745 0.96260 1.00864 1.01876 1.21572 0.95622 0.97722 1.01376 1.21683 0.94740 0.95410 1.03229 1.21988 0.96106 0.96127 1.02386 1.21380 0.96214 0.92499 0.86454 0.89090 1.20980 0.89050 0.89428 0.98997 1.42341 1.05373 1.01962 1.87990 1.19156 0.83575 0.92506 1.42388 0.91171 1.24735 0.97627 0.95668 1.02543 1.69650 1.32988 0.99090 1.56084 0.86283 0.85162 0.76915 0.77876 1.21245 1.21729 1.21241 1.45864 1.15346 1.56509 1.17494 1.17565 0.82423 0.78290 0.86230 1.90797 1.51450 1.59229 1.39330 1.20866 0.96188 1.06416 0.97361 1.23183 0.98277 0.88716 0.85083 1.66716 1.15025 1.12466 1.25971 1.19619 0.91930 0.94830 0.88697 1.47504 1.13128 1.45679 1.14648 0.69838 1.81707 0.94213 1.14987 1.06017 1.74874 1.21100 1.08162 1.03162 1.20392 0.93209 1.08909 0.97658 1.21064 0.94593 0.85577 0.93701 0.93350 0.92988 0.92746 0.92398 0.92619 0.91830 0.91394 0.90962 0.91831 0.94727 0.95678 0.77997 0.93412 0.76165 0.80166 0.81647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.91 37.15 0.37 -1.11 16 2 C -0.13 -1.29 5.93 -26.73 -0.16 -1.45 16 3 C -0.11 -1.37 3.81 -26.73 -0.10 -1.47 16 4 C -0.13 -1.51 4.89 -26.73 -0.13 -1.64 16 5 C 0.14 2.03 2.42 -67.93 -0.16 1.86 16 6 H 0.09 1.53 7.58 -51.93 -0.39 1.14 16 7 C 0.14 2.51 5.82 -4.04 -0.02 2.49 16 8 N -0.73 -16.83 5.43 -59.91 -0.33 -17.15 16 9 C -0.25 -6.42 9.99 -15.06 -0.15 -6.57 16 10 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 11 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 12 N -0.93 -26.97 13.06 55.49 0.72 -26.25 16 13 Si 0.91 21.58 29.55 -169.99 -5.02 16.56 16 14 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 16 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 17 N -0.70 -9.50 4.42 -54.78 -0.24 -9.75 16 18 C 0.57 7.99 6.34 -12.38 -0.08 7.92 16 19 O -0.53 -8.63 13.53 5.31 0.07 -8.56 16 20 C -0.20 -2.48 5.88 -104.87 -0.62 -3.09 16 21 C 0.22 2.55 10.69 -17.09 -0.18 2.37 16 22 N -0.49 -6.02 10.37 -12.03 -0.12 -6.15 16 23 C 0.29 3.61 8.49 -155.93 -1.32 2.29 16 24 N -0.48 -4.89 7.53 31.15 0.23 -4.65 16 25 H 0.45 2.95 8.96 -182.53 -1.64 1.31 16 26 N 0.01 0.16 13.82 60.35 0.83 1.00 16 27 N -0.19 -2.52 12.40 32.17 0.40 -2.13 16 28 C -0.08 -0.98 7.27 -84.73 -0.62 -1.60 16 29 C 0.08 1.00 9.75 -38.51 -0.38 0.63 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.83 5.65 -51.93 -0.29 0.54 16 36 H 0.07 0.93 7.84 -51.93 -0.41 0.52 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.39 9.50 7.33 -40.82 -0.30 9.20 16 42 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 43 H 0.40 5.00 6.64 -40.82 -0.27 4.73 16 44 H 0.18 1.71 6.39 -52.49 -0.34 1.38 16 45 H 0.17 1.88 7.71 -52.49 -0.40 1.48 16 LS Contribution 375.66 15.07 5.66 5.66 Total: -1.00 -31.60 375.66 -8.83 -40.44 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: -7.39 Total: 10.70 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -3.65 Total: 0.28 kcal Atomic # 7 Polarization: -66.57 SS G_CDS: 1.50 Total: -65.07 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: 0.07 Total: -8.56 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.60 -8.83 -40.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329875282.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.047 kcal (2) G-P(sol) polarization free energy of solvation -31.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds