Wall clock time and date at job start Tue Mar 31 2020 18:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47025 * 2 1 4 4 C 1.52994 * 109.47025 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47306 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.46892 * 305.00508 * 5 4 3 7 7 C 1.52996 * 109.47530 * 184.99714 * 5 4 3 8 8 N 1.46498 * 109.47059 * 184.99929 * 7 5 4 9 9 C 1.36943 * 119.99752 * 179.72430 * 8 7 5 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 7 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 7 12 12 N 1.31624 * 119.99698 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00072 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47213 * 60.00246 * 13 11 9 15 15 H 1.48502 * 109.47317 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47081 * 299.99875 * 13 11 9 17 17 N 1.46506 * 109.46609 * 64.99913 * 5 4 3 18 18 C 1.34782 * 119.99726 * 274.99704 * 17 5 4 19 19 O 1.21567 * 119.99951 * 0.02562 * 18 17 5 20 20 C 1.47723 * 119.99338 * 179.97438 * 18 17 5 21 21 C 1.40112 * 120.35705 * 0.02562 * 20 18 17 22 22 N 1.31259 * 121.15039 * 179.97438 * 21 20 18 23 23 C 1.32715 * 121.80210 * 0.02562 * 22 21 20 24 24 N 1.37120 * 133.40649 * 179.97438 * 23 22 21 25 25 H 0.97001 * 126.58844 * 0.02562 * 24 23 22 26 26 N 1.40187 * 106.81674 * 180.02562 * 24 23 22 27 27 N 1.28665 * 109.51504 * 0.02562 * 26 24 23 28 28 C 1.35336 * 109.99742 * 359.97438 * 27 26 24 29 29 C 1.39436 * 120.34394 * 179.72591 * 20 18 17 30 30 H 1.09001 * 109.46772 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47619 * 300.00358 * 1 2 3 32 32 H 1.09003 * 109.47243 * 60.00697 * 1 2 3 33 33 H 1.09001 * 109.47619 * 239.99641 * 2 1 3 34 34 H 1.09003 * 109.47243 * 119.99303 * 2 1 3 35 35 H 1.08994 * 109.47070 * 59.99773 * 3 2 1 36 36 H 1.09003 * 109.46541 * 299.99733 * 3 2 1 37 37 H 1.09001 * 109.47619 * 59.99641 * 4 3 2 38 38 H 1.09003 * 109.47243 * 299.99303 * 4 3 2 39 39 H 1.09004 * 109.47066 * 65.00196 * 7 5 4 40 40 H 1.08994 * 109.46974 * 305.00344 * 7 5 4 41 41 H 0.97001 * 120.00384 * 0.02562 * 8 7 5 42 42 H 0.96999 * 119.99739 * 180.02562 * 12 11 9 43 43 H 0.97000 * 120.00390 * 95.00648 * 17 5 4 44 44 H 1.07997 * 119.42383 * 359.97438 * 21 20 18 45 45 H 1.07996 * 120.95261 * 0.02562 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8851 0.0000 6 1 3.6456 3.4236 -0.8423 7 6 5.6048 2.8869 -0.1250 8 7 6.1029 4.2594 -0.0058 9 6 7.4473 4.5089 -0.0814 10 1 8.1399 3.6943 -0.2333 11 6 7.9197 5.8087 0.0373 12 7 7.0755 6.8014 0.2229 13 14 9.7535 6.1491 -0.0665 14 1 10.2664 5.7000 -1.3858 15 1 9.9962 7.6058 0.0897 16 1 10.4557 5.4121 1.0147 17 7 3.6918 3.5407 1.2513 18 6 2.4744 4.1078 1.3655 19 8 1.6983 4.0747 0.4304 20 6 2.0829 4.7684 2.6275 21 6 2.9713 4.8103 3.7101 22 7 2.6398 5.3935 4.8383 23 6 1.4551 5.9673 5.0073 24 7 0.8693 6.6280 6.0563 25 1 1.2646 6.7984 6.9255 26 7 -0.4108 7.0100 5.6309 27 7 -0.5968 6.6159 4.4203 28 6 0.5034 5.9691 3.9699 29 6 0.8274 5.3622 2.7517 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5137 -0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 1.6766 1.9564 0.8899 36 1 1.6766 1.9563 -0.8901 37 1 3.9337 0.9286 -0.8891 38 1 3.9329 0.9290 0.8909 39 1 5.8903 2.4797 -1.0950 40 1 6.0350 2.2741 0.6671 41 1 5.4808 4.9910 0.1309 42 1 7.4056 7.7097 0.3054 43 1 4.3109 3.5669 1.9976 44 1 3.9459 4.3548 3.6146 45 1 0.1234 5.3495 1.9328 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329875282.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:10 Heat of formation + Delta-G solvation = 64.870846 kcal Electronic energy + Delta-G solvation = -28287.923524 eV Core-core repulsion = 24341.605693 eV Total energy + Delta-G solvation = -3946.317831 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -43.56070 -41.31286 -39.53305 -37.84224 -36.20071 -35.17862 -35.12710 -33.26279 -32.85976 -32.11447 -31.10897 -28.66806 -26.25762 -25.80558 -25.42311 -23.88713 -23.69201 -22.47066 -21.73435 -21.52872 -19.88252 -19.72726 -19.09613 -18.06227 -17.71362 -17.33082 -17.10222 -16.68433 -16.22397 -15.80106 -15.47463 -15.15650 -15.03752 -14.96448 -14.46352 -14.37979 -14.25727 -14.05597 -13.79022 -13.73676 -13.44186 -13.19527 -13.08052 -12.82788 -12.72805 -12.70622 -12.44005 -12.14405 -11.94872 -11.81020 -11.79431 -11.37661 -11.33692 -11.22966 -10.90537 -10.68594 -10.54040 -10.28493 -9.89227 -8.94360 -7.89483 -5.17673 -0.99589 -0.56662 0.84341 0.86702 1.52307 1.53665 1.59531 1.67759 2.03302 2.52974 2.60156 2.69466 3.02967 3.07571 3.43369 3.45817 3.56060 3.67356 3.81135 4.07975 4.14761 4.15929 4.31479 4.38960 4.43081 4.48380 4.62573 4.64897 4.70785 4.90279 4.94983 5.01295 5.01420 5.06923 5.15685 5.20935 5.30518 5.39443 5.47056 5.57217 5.62967 5.63364 5.68877 6.27838 6.31322 6.52846 6.56724 7.20262 7.39878 8.14572 8.37382 9.32902 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.007460 B = 0.004080 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3752.646249 B = 6861.337370 C =10065.930460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.107 4.107 4 C -0.118 4.118 5 C 0.149 3.851 6 H 0.065 0.935 7 C 0.144 3.856 8 N -0.742 5.742 9 C -0.240 4.240 10 H 0.079 0.921 11 C -0.070 4.070 12 N -0.966 5.966 13 Si 0.966 3.034 14 H -0.282 1.282 15 H -0.302 1.302 16 H -0.275 1.275 17 N -0.697 5.697 18 C 0.572 3.428 19 O -0.556 6.556 20 C -0.202 4.202 21 C 0.225 3.775 22 N -0.492 5.492 23 C 0.287 3.713 24 N -0.465 5.465 25 H 0.469 0.531 26 N 0.014 4.986 27 N -0.210 5.210 28 C -0.087 4.087 29 C 0.082 3.918 30 H 0.062 0.938 31 H 0.045 0.955 32 H 0.047 0.953 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.051 0.949 36 H 0.046 0.954 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.037 0.963 40 H 0.045 0.955 41 H 0.375 0.625 42 H 0.248 0.752 43 H 0.409 0.591 44 H 0.201 0.799 45 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.130 -10.588 9.203 18.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.144 4.144 4 C -0.157 4.157 5 C 0.045 3.955 6 H 0.083 0.917 7 C 0.017 3.983 8 N -0.386 5.386 9 C -0.372 4.372 10 H 0.097 0.903 11 C -0.262 4.262 12 N -0.617 5.617 13 Si 0.796 3.204 14 H -0.209 1.209 15 H -0.229 1.229 16 H -0.201 1.201 17 N -0.348 5.348 18 C 0.358 3.642 19 O -0.436 6.436 20 C -0.210 4.210 21 C 0.051 3.949 22 N -0.207 5.207 23 C 0.042 3.958 24 N -0.193 5.193 25 H 0.321 0.679 26 N 0.031 4.969 27 N -0.091 5.091 28 C -0.213 4.213 29 C 0.052 3.948 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.055 0.945 40 H 0.062 0.938 41 H 0.207 0.793 42 H 0.057 0.943 43 H 0.246 0.754 44 H 0.217 0.783 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -13.292 -9.899 9.624 19.164 hybrid contribution 1.633 0.757 -0.135 1.805 sum -11.659 -9.142 9.489 17.594 Atomic orbital electron populations 1.21745 0.96074 1.01656 1.01294 1.21543 0.95804 0.96318 1.02245 1.21573 0.94782 0.96453 1.01623 1.21924 0.95864 0.94118 1.03756 1.21179 0.94169 0.94104 0.86097 0.91701 1.21139 0.90822 0.86804 0.99495 1.42514 1.04323 1.03890 1.87837 1.19574 0.85120 0.92568 1.39934 0.90321 1.25442 1.01226 0.95820 1.03749 1.69806 1.34481 0.98979 1.58429 0.85320 0.81012 0.75978 0.78068 1.20856 1.22878 1.20141 1.45787 1.15370 1.56332 1.17315 1.17722 0.82176 0.77888 0.86409 1.90788 1.52200 1.60213 1.40367 1.20708 0.96522 1.06859 0.96945 1.23469 0.98710 0.88168 0.84513 1.66792 1.14939 1.12788 1.26136 1.19767 0.91928 0.95028 0.89100 1.47496 1.12383 1.44464 1.14924 0.67937 1.81651 0.94803 1.14724 1.05692 1.74874 1.21555 1.08944 1.03706 1.20505 0.93456 1.09288 0.98041 1.21133 0.94682 0.85237 0.93786 0.91850 0.93543 0.93417 0.91594 0.91580 0.93006 0.93527 0.89853 0.90081 0.94511 0.93761 0.79250 0.94325 0.75357 0.78252 0.81320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.91 71.98 0.71 -2.05 16 2 C -0.12 -2.27 5.93 30.59 0.18 -2.09 16 3 C -0.11 -2.48 3.81 30.59 0.12 -2.36 16 4 C -0.12 -2.58 4.89 30.59 0.15 -2.43 16 5 C 0.15 4.23 2.42 44.99 0.11 4.34 16 6 H 0.06 2.21 7.58 -2.39 -0.02 2.19 16 7 C 0.14 4.81 5.82 86.38 0.50 5.32 16 8 N -0.74 -33.63 5.43 -343.46 -1.87 -35.49 16 9 C -0.24 -12.32 9.99 84.03 0.84 -11.48 16 10 H 0.08 3.84 7.83 -2.91 -0.02 3.81 16 11 C -0.07 -3.79 5.50 84.86 0.47 -3.32 16 12 N -0.97 -56.56 13.06 21.65 0.28 -56.28 16 13 Si 0.97 44.11 29.55 68.60 2.03 46.13 16 14 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 15 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 16 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 17 N -0.70 -18.38 4.42 -445.50 -1.97 -20.35 16 18 C 0.57 16.00 6.34 86.75 0.55 16.55 16 19 O -0.56 -18.43 13.53 -3.93 -0.05 -18.48 16 20 C -0.20 -4.93 5.88 -20.03 -0.12 -5.05 16 21 C 0.22 4.96 10.69 85.23 0.91 5.87 16 22 N -0.49 -11.56 10.37 -191.99 -1.99 -13.55 16 23 C 0.29 6.77 8.49 134.01 1.14 7.91 16 24 N -0.46 -8.79 7.53 -55.37 -0.42 -9.21 16 25 H 0.47 5.33 8.96 -213.26 -1.91 3.42 16 26 N 0.01 0.33 13.82 37.02 0.51 0.84 16 27 N -0.21 -5.45 12.40 -52.14 -0.65 -6.10 16 28 C -0.09 -2.22 7.27 39.63 0.29 -1.93 16 29 C 0.08 2.03 9.75 22.96 0.22 2.25 16 30 H 0.06 0.96 8.14 -2.39 -0.02 0.95 16 31 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.05 1.33 5.65 -2.39 -0.01 1.31 16 36 H 0.05 1.28 7.84 -2.39 -0.02 1.26 16 37 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 40 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.38 18.53 7.33 -92.71 -0.68 17.85 16 42 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 43 H 0.41 9.62 6.64 -92.71 -0.62 9.00 16 44 H 0.20 3.48 6.39 -2.91 -0.02 3.46 16 45 H 0.17 3.94 7.71 -2.91 -0.02 3.92 16 Total: -1.00 -66.88 375.66 -0.19 -67.07 By element: Atomic # 1 Polarization: 36.02 SS G_CDS: -2.15 Total: 33.87 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: 6.07 Total: 11.53 kcal Atomic # 7 Polarization: -134.04 SS G_CDS: -6.10 Total: -140.13 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.05 Total: -18.48 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Total: -66.88 -0.19 -67.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329875282.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.943 kcal (2) G-P(sol) polarization free energy of solvation -66.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds