Wall clock time and date at job start Tue Mar 31 2020 18:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.63418 * 2 1 4 4 C 1.53245 * 109.63022 * 239.60995 * 2 1 3 5 5 N 1.46905 * 109.33657 * 294.12437 * 4 2 1 6 6 C 1.46903 * 110.99351 * 172.74613 * 5 4 2 7 7 C 1.50703 * 109.46609 * 170.00171 * 6 5 4 8 8 C 1.35134 * 125.69561 * 94.99945 * 7 6 5 9 9 N 1.36807 * 107.18057 * 179.97438 * 8 7 6 10 10 C 1.36568 * 132.55812 * 179.97438 * 9 8 7 11 11 C 1.34923 * 120.65297 * 179.97438 * 10 9 8 12 12 C 1.40474 * 120.32059 * 0.04171 * 11 10 9 13 13 C 1.36191 * 119.67184 * 359.97438 * 12 11 10 14 14 F 1.35106 * 120.35356 * 179.97438 * 13 12 11 15 15 C 1.37026 * 107.00289 * 0.02562 * 9 8 7 16 16 N 1.32572 * 108.05030 * 359.73639 * 15 9 8 17 17 C 1.46902 * 111.26807 * 296.89138 * 5 4 2 18 18 C 1.53238 * 109.33713 * 63.10988 * 17 5 4 19 19 H 1.08996 * 109.63155 * 66.07154 * 18 17 5 20 20 C 1.53003 * 109.62534 * 186.45882 * 18 17 5 21 21 N 1.47076 * 108.52193 * 306.16367 * 18 17 5 22 22 C 1.36933 * 120.88572 * 231.16573 * 21 18 17 23 23 H 1.07999 * 120.00149 * 127.74612 * 22 21 18 24 24 C 1.38816 * 119.99902 * 307.75353 * 22 21 18 25 25 N 1.31616 * 119.99971 * 156.43328 * 24 22 21 26 26 Si 1.86802 * 119.99699 * 336.42318 * 24 22 21 27 27 H 1.48499 * 109.46618 * 95.27682 * 26 24 22 28 28 H 1.48505 * 109.47029 * 215.27123 * 26 24 22 29 29 H 1.48499 * 109.47520 * 335.27557 * 26 24 22 30 30 H 1.08996 * 109.47462 * 180.38934 * 1 2 3 31 31 H 1.09002 * 109.46734 * 60.38922 * 1 2 3 32 32 H 1.08997 * 109.47150 * 300.39235 * 1 2 3 33 33 H 1.09001 * 109.48898 * 54.07910 * 4 2 1 34 34 H 1.08998 * 109.49171 * 174.13712 * 4 2 1 35 35 H 1.09004 * 109.46797 * 289.99616 * 6 5 4 36 36 H 1.08997 * 109.47310 * 49.99977 * 6 5 4 37 37 H 1.07999 * 126.41016 * 359.97438 * 8 7 6 38 38 H 1.08004 * 119.67229 * 0.02562 * 10 9 8 39 39 H 1.07999 * 119.83718 * 180.02562 * 11 10 9 40 40 H 1.08000 * 120.16646 * 179.97438 * 12 11 10 41 41 H 1.09001 * 109.48860 * 183.06977 * 17 5 4 42 42 H 1.09001 * 109.49082 * 303.11991 * 17 5 4 43 43 H 1.08998 * 109.47280 * 66.77178 * 20 18 17 44 44 H 1.09002 * 109.47021 * 186.77351 * 20 18 17 45 45 H 1.09001 * 109.47311 * 306.77230 * 20 18 17 46 46 H 0.97003 * 119.99576 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0266 0.0000 4 6 2.0448 -0.7302 -1.2451 5 7 1.6746 -2.1495 -1.1645 6 6 1.9978 -2.8496 -2.4149 7 6 1.8367 -4.3346 -2.2151 8 6 0.7325 -5.0549 -2.5120 9 7 0.9977 -6.3557 -2.1817 10 6 0.2559 -7.4994 -2.2647 11 6 0.7668 -8.6814 -1.8618 12 6 2.0727 -8.7517 -1.3490 13 6 2.8240 -7.6192 -1.2601 14 9 4.0814 -7.6708 -0.7686 15 6 2.2744 -6.3908 -1.6854 16 7 2.7628 -5.1588 -1.7205 17 6 2.3146 -2.8027 -0.0148 18 6 1.8109 -2.1575 1.2806 19 1 0.7487 -2.3677 1.4054 20 6 2.5895 -2.7200 2.4715 21 7 2.0240 -0.7049 1.1927 22 6 2.6650 -0.0266 2.1947 23 1 3.5025 0.6147 1.9629 24 6 2.2383 -0.1633 3.5086 25 7 3.0707 0.0775 4.4993 26 14 0.4826 -0.6886 3.8705 27 1 0.4394 -2.1577 4.0829 28 1 0.0012 0.0027 5.0935 29 1 -0.3885 -0.3284 2.7230 30 1 -0.3634 -1.0276 0.0070 31 1 -0.3633 0.5078 -0.8935 32 1 -0.3633 0.5199 0.8864 33 1 1.5992 -0.2881 -2.1362 34 1 3.1297 -0.6392 -1.2974 35 1 1.3245 -2.5139 -3.2036 36 1 3.0273 -2.6306 -2.6982 37 1 -0.1873 -4.6747 -2.9314 38 1 -0.7493 -7.4574 -2.6574 39 1 0.1687 -9.5778 -1.9337 40 1 2.4791 -9.6991 -1.0269 41 1 2.0648 -3.8637 -0.0138 42 1 3.3959 -2.6837 -0.0844 43 1 3.6296 -2.4000 2.4094 44 1 2.1509 -2.3518 3.3990 45 1 2.5428 -3.8088 2.4546 46 1 2.7724 -0.0177 5.4174 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331580033.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:44 Heat of formation + Delta-G solvation = 73.663835 kcal Electronic energy + Delta-G solvation = -29605.007093 eV Core-core repulsion = 25639.150593 eV Total energy + Delta-G solvation = -3965.856500 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.171 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -50.03602 -43.87772 -40.34457 -38.48775 -36.52414 -34.54132 -34.16361 -33.67349 -31.67758 -30.21356 -29.77845 -28.01930 -27.60743 -25.89836 -24.36672 -24.08734 -23.44760 -22.67937 -21.33324 -20.24680 -19.31146 -18.68922 -18.40294 -17.64839 -17.37405 -17.14985 -16.64734 -16.45207 -16.23794 -15.99482 -15.76782 -15.62648 -15.22624 -15.09069 -14.74106 -14.51038 -14.32523 -13.83135 -13.69985 -13.63148 -13.35070 -13.09211 -13.03044 -12.87153 -12.84267 -12.46121 -12.32753 -12.29164 -12.17671 -11.81080 -11.72918 -11.68602 -11.36318 -11.27721 -11.11022 -10.48451 -9.83695 -9.25516 -8.84391 -8.40284 -8.20367 -5.72184 -0.38454 0.17832 1.31259 1.38602 1.48746 1.53445 1.71831 2.30627 2.43180 2.81877 2.99855 3.09729 3.18282 3.39277 3.58050 3.69017 3.89504 4.14005 4.16216 4.20017 4.28412 4.41169 4.42820 4.47966 4.51471 4.59492 4.65678 4.69422 4.81755 4.82787 4.87052 4.87841 4.90821 4.95095 4.97876 5.05289 5.18356 5.25351 5.37813 5.43683 5.46933 5.51666 5.64237 5.96739 6.01963 6.10632 6.20112 6.30616 6.78502 7.10012 7.62292 8.22932 8.96201 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.015209 B = 0.003772 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.627481 B = 7421.939252 C = 8116.178194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.158 3.842 3 H 0.063 0.937 4 C 0.058 3.942 5 N -0.521 5.521 6 C 0.136 3.864 7 C 0.038 3.962 8 C -0.050 4.050 9 N -0.355 5.355 10 C 0.051 3.949 11 C -0.120 4.120 12 C -0.112 4.112 13 C 0.086 3.914 14 F -0.136 7.136 15 C 0.165 3.835 16 N -0.523 5.523 17 C 0.078 3.922 18 C 0.173 3.827 19 H 0.027 0.973 20 C -0.135 4.135 21 N -0.606 5.606 22 C -0.266 4.266 23 H 0.025 0.975 24 C 0.019 3.981 25 N -0.937 5.937 26 Si 0.919 3.081 27 H -0.278 1.278 28 H -0.306 1.306 29 H -0.245 1.245 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.025 0.975 33 H 0.110 0.890 34 H 0.012 0.988 35 H 0.129 0.871 36 H 0.033 0.967 37 H 0.229 0.771 38 H 0.214 0.786 39 H 0.208 0.792 40 H 0.181 0.819 41 H 0.066 0.934 42 H 0.002 0.998 43 H 0.039 0.961 44 H 0.047 0.953 45 H 0.051 0.949 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.814 -19.508 -19.874 30.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.052 3.948 3 H 0.081 0.919 4 C -0.071 4.071 5 N -0.245 5.245 6 C 0.008 3.992 7 C -0.093 4.093 8 C -0.182 4.182 9 N -0.027 5.027 10 C -0.070 4.070 11 C -0.140 4.140 12 C -0.136 4.136 13 C 0.065 3.935 14 F -0.115 7.115 15 C -0.080 4.080 16 N -0.244 5.244 17 C -0.052 4.052 18 C 0.067 3.933 19 H 0.044 0.956 20 C -0.193 4.193 21 N -0.331 5.331 22 C -0.396 4.396 23 H 0.043 0.957 24 C -0.180 4.180 25 N -0.579 5.579 26 Si 0.746 3.254 27 H -0.205 1.205 28 H -0.235 1.235 29 H -0.168 1.168 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.045 0.955 33 H 0.128 0.872 34 H 0.030 0.970 35 H 0.147 0.853 36 H 0.051 0.949 37 H 0.246 0.754 38 H 0.231 0.769 39 H 0.225 0.775 40 H 0.198 0.802 41 H 0.084 0.916 42 H 0.020 0.980 43 H 0.058 0.942 44 H 0.066 0.934 45 H 0.070 0.930 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.492 -19.212 -19.417 29.634 hybrid contribution 0.612 0.019 0.929 1.113 sum -10.879 -19.193 -18.487 28.784 Atomic orbital electron populations 1.22040 0.96266 1.01291 1.00416 1.20962 0.93553 0.94699 0.85577 0.91926 1.22526 0.97164 0.87809 0.99607 1.62140 1.57952 1.02347 1.02070 1.20587 1.00522 0.85228 0.92891 1.20942 0.90839 0.96413 1.01154 1.23017 1.03293 0.80229 1.11700 1.42874 1.11619 1.08671 1.39492 1.22660 0.99371 0.82962 1.01963 1.21214 0.94629 0.98801 0.99316 1.21591 0.95038 0.97414 0.99534 1.16706 0.81742 0.91287 1.03795 1.91501 1.37801 1.96779 1.85398 1.20838 0.85869 0.94590 1.06704 1.70648 1.32232 0.99120 1.22407 1.22255 0.94516 0.97314 0.91158 1.20647 0.95569 0.84219 0.92857 0.95578 1.21905 1.00496 0.98228 0.98644 1.44520 1.67083 1.01595 1.19932 1.18273 1.09024 1.25760 0.86542 0.95719 1.26276 0.99673 0.96389 0.95635 1.70034 1.35987 1.52336 0.99531 0.86376 0.84314 0.77420 0.77296 1.20507 1.23460 1.16807 0.93031 0.90433 0.95548 0.87218 0.96951 0.85321 0.94918 0.75435 0.76935 0.77480 0.80202 0.91602 0.97958 0.94210 0.93402 0.92962 0.92789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.01 9.08 71.98 0.65 -4.36 16 2 C 0.16 6.35 3.31 44.96 0.15 6.50 16 3 H 0.06 2.60 7.96 -2.39 -0.02 2.59 16 4 C 0.06 1.93 4.97 86.38 0.43 2.36 16 5 N -0.52 -17.30 4.27 -899.77 -3.85 -21.15 16 6 C 0.14 3.64 5.81 85.56 0.50 4.14 16 7 C 0.04 1.07 5.01 41.59 0.21 1.28 16 8 C -0.05 -1.02 11.66 83.20 0.97 -0.05 16 9 N -0.35 -7.10 2.95 -351.96 -1.04 -8.14 16 10 C 0.05 0.49 10.95 83.19 0.91 1.40 16 11 C -0.12 -0.84 9.98 22.05 0.22 -0.62 16 12 C -0.11 -1.52 10.04 22.34 0.22 -1.29 16 13 C 0.09 2.15 7.34 22.50 0.17 2.31 16 14 F -0.14 -4.07 17.28 44.97 0.78 -3.29 16 15 C 0.17 4.72 7.80 134.17 1.05 5.77 16 16 N -0.52 -18.06 10.02 -182.27 -1.83 -19.89 16 17 C 0.08 3.20 4.37 86.38 0.38 3.58 16 18 C 0.17 8.05 2.06 44.96 0.09 8.14 16 19 H 0.03 1.25 6.92 -2.39 -0.02 1.23 16 20 C -0.13 -6.73 7.83 71.98 0.56 -6.17 16 21 N -0.61 -30.00 1.97 -650.63 -1.28 -31.28 16 22 C -0.27 -15.64 8.72 84.04 0.73 -14.91 16 23 H 0.03 1.65 8.06 -2.91 -0.02 1.63 16 24 C 0.02 1.14 3.86 84.86 0.33 1.46 16 25 N -0.94 -59.32 13.97 21.65 0.30 -59.01 16 26 Si 0.92 47.14 24.77 68.60 1.70 48.84 16 27 H -0.28 -13.96 6.45 99.48 0.64 -13.31 16 28 H -0.31 -15.80 7.11 99.48 0.71 -15.09 16 29 H -0.24 -11.93 5.59 99.48 0.56 -11.37 16 30 H 0.05 1.86 7.07 -2.39 -0.02 1.85 16 31 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.03 1.04 6.78 -2.39 -0.02 1.02 16 33 H 0.11 2.74 8.11 -2.39 -0.02 2.72 16 34 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.13 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.03 0.98 8.08 -2.39 -0.02 0.96 16 37 H 0.23 2.50 8.06 -2.91 -0.02 2.48 16 38 H 0.21 0.07 8.06 -2.91 -0.02 0.04 16 39 H 0.21 -0.54 8.06 -2.91 -0.02 -0.56 16 40 H 0.18 1.34 8.06 -2.91 -0.02 1.32 16 41 H 0.07 2.74 5.70 -2.39 -0.01 2.73 16 42 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 43 H 0.04 2.15 7.69 -2.39 -0.02 2.14 16 44 H 0.05 2.55 3.33 -2.39 -0.01 2.54 16 45 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 46 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -82.31 358.11 3.13 -79.18 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: 0.77 Total: 5.19 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: 7.57 Total: 9.54 kcal Atomic # 7 Polarization: -131.77 SS G_CDS: -7.69 Total: -139.46 kcal Atomic # 9 Polarization: -4.07 SS G_CDS: 0.78 Total: -3.29 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 1.70 Total: 48.84 kcal Total: -82.31 3.13 -79.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331580033.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.849 kcal (2) G-P(sol) polarization free energy of solvation -82.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds