Wall clock time and date at job start Tue Mar 31 2020 18:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.77931 * 2 1 4 4 C 1.53234 * 109.62950 * 120.48330 * 2 1 3 5 5 N 1.46898 * 109.34352 * 173.54118 * 4 2 1 6 6 C 1.46898 * 111.00468 * 172.74459 * 5 4 2 7 7 C 1.50691 * 109.47338 * 294.30510 * 6 5 4 8 8 C 1.35138 * 125.69409 * 94.71049 * 7 6 5 9 9 N 1.36808 * 107.17948 * 179.84380 * 8 7 6 10 10 C 1.36583 * 132.56279 * 180.11477 * 9 8 7 11 11 C 1.34916 * 120.65094 * 180.33390 * 10 9 8 12 12 C 1.40479 * 120.32417 * 0.02562 * 11 10 9 13 13 C 1.36190 * 119.67285 * 0.02562 * 12 11 10 14 14 F 1.35104 * 120.35495 * 180.02562 * 13 12 11 15 15 C 1.37033 * 107.00313 * 0.41705 * 9 8 7 16 16 N 1.32568 * 108.04748 * 359.74086 * 15 9 8 17 17 C 1.46901 * 111.26840 * 296.89690 * 5 4 2 18 18 C 1.53243 * 109.34066 * 63.09985 * 17 5 4 19 19 H 1.08993 * 109.63171 * 186.46158 * 18 17 5 20 20 C 1.53010 * 109.78721 * 65.97540 * 18 17 5 21 21 N 1.47077 * 108.52326 * 306.17455 * 18 17 5 22 22 C 1.36936 * 120.88325 * 230.91187 * 21 18 17 23 23 H 1.08002 * 120.00451 * 152.93329 * 22 21 18 24 24 C 1.38817 * 119.99729 * 332.93675 * 22 21 18 25 25 N 1.31624 * 119.99830 * 342.40292 * 24 22 21 26 26 Si 1.86795 * 120.00039 * 162.40578 * 24 22 21 27 27 H 1.48498 * 109.47118 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47338 * 120.00051 * 26 24 22 29 29 H 1.48502 * 109.46825 * 239.99612 * 26 24 22 30 30 H 1.08999 * 109.46790 * 177.70971 * 1 2 3 31 31 H 1.08996 * 109.47082 * 297.70796 * 1 2 3 32 32 H 1.09002 * 109.46858 * 57.71158 * 1 2 3 33 33 H 1.09007 * 109.49272 * 53.58007 * 4 2 1 34 34 H 1.08998 * 109.51748 * 293.51865 * 4 2 1 35 35 H 1.09001 * 109.46573 * 54.30444 * 6 5 4 36 36 H 1.08992 * 109.47329 * 174.29984 * 6 5 4 37 37 H 1.07993 * 126.41151 * 359.97438 * 8 7 6 38 38 H 1.07999 * 119.66937 * 0.35860 * 10 9 8 39 39 H 1.08007 * 119.83194 * 179.97438 * 11 10 9 40 40 H 1.08003 * 120.16028 * 180.02562 * 12 11 10 41 41 H 1.08995 * 109.49079 * 303.14538 * 17 5 4 42 42 H 1.08996 * 109.51748 * 183.07113 * 17 5 4 43 43 H 1.09005 * 109.47125 * 300.87337 * 20 18 17 44 44 H 1.08996 * 109.47010 * 60.87172 * 20 18 17 45 45 H 1.09001 * 109.46794 * 180.87443 * 20 18 17 46 46 H 0.96997 * 119.99710 * 175.10989 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0258 0.0000 4 6 2.0448 -0.7322 1.2438 5 7 3.5055 -0.8643 1.1609 6 6 4.0569 -1.4060 2.4101 7 6 3.8418 -0.4155 3.5253 8 6 2.8047 -0.4166 4.3916 9 7 2.9874 0.6395 5.2419 10 6 2.2622 1.1106 6.2991 11 6 2.6699 2.2007 6.9816 12 6 3.8494 2.8684 6.6126 13 6 4.5822 2.4107 5.5599 14 9 5.7191 3.0420 5.1934 15 6 4.1427 1.2683 4.8575 16 7 4.6409 0.6127 3.8185 17 6 3.9017 -1.6870 0.0102 18 6 3.4630 -0.9940 -1.2842 19 1 3.6509 -1.6511 -2.1333 20 6 4.2413 0.3113 -1.4624 21 7 2.0241 -0.7028 -1.1938 22 6 1.1680 -1.0712 -2.1971 23 1 0.1287 -1.2648 -1.9763 24 6 1.6361 -1.1959 -3.4980 25 7 2.7797 -0.6424 -3.8418 26 14 0.6429 -2.1492 -4.7606 27 1 -0.5948 -2.6696 -4.1263 28 1 0.2826 -1.2516 -5.8873 29 1 1.4519 -3.2849 -5.2717 30 1 -0.3633 -1.0269 -0.0411 31 1 -0.3633 0.4778 0.9098 32 1 -0.3633 0.5490 -0.8688 33 1 1.5924 -1.7225 1.2962 34 1 1.7810 -0.1642 2.1359 35 1 3.5540 -2.3419 2.6534 36 1 5.1243 -1.5885 2.2871 37 1 1.9861 -1.1206 4.4107 38 1 1.3537 0.6053 6.5917 39 1 2.0860 2.5621 7.8153 40 1 4.1735 3.7406 7.1611 41 1 3.4234 -2.6640 0.0798 42 1 4.9845 -1.8115 0.0071 43 1 4.0569 0.9636 -0.6088 44 1 5.3070 0.0926 -1.5291 45 1 3.9142 0.8074 -2.3762 46 1 3.1416 -0.7886 -4.7298 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331580034.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:49 Heat of formation + Delta-G solvation = 89.019082 kcal Electronic energy + Delta-G solvation = -29175.392572 eV Core-core repulsion = 25210.201926 eV Total energy + Delta-G solvation = -3965.190647 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.171 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -49.14663 -42.97125 -38.62831 -37.52697 -34.79555 -33.46462 -32.49491 -31.60594 -30.31403 -29.05428 -27.89106 -26.64837 -25.92020 -24.06476 -23.50103 -23.11661 -22.13591 -20.63019 -20.33132 -18.57337 -18.41808 -17.70828 -16.62604 -16.47655 -16.16393 -15.96325 -15.34529 -15.13042 -14.70100 -14.54273 -14.44267 -13.95052 -13.86689 -13.75941 -13.17842 -13.03871 -12.84692 -12.39808 -12.21510 -12.05512 -11.88174 -11.72544 -11.48648 -11.14604 -10.93535 -10.86053 -10.81508 -10.56164 -10.45659 -10.37210 -10.13945 -9.96742 -9.83850 -9.40598 -9.15795 -8.86829 -8.38763 -8.03674 -7.68498 -6.57513 -5.67168 -3.12257 0.34574 0.94305 2.25420 2.64072 3.14911 3.40864 3.49462 3.50667 3.61386 3.95016 4.26625 4.35705 4.51099 4.55880 4.64873 5.01566 5.12956 5.19348 5.36660 5.43971 5.45809 5.56172 5.61508 5.64130 5.80962 5.87990 5.99152 6.16877 6.17485 6.18959 6.28534 6.34958 6.39759 6.45296 6.47962 6.70474 6.77361 6.93657 7.00532 7.11908 7.22258 7.32770 7.61070 7.64283 7.76855 7.80181 7.93605 8.06138 8.52293 9.31187 9.93444 10.52369 11.37444 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.022298 B = 0.002954 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.425978 B = 9477.610200 C = 9879.097313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.172 3.828 3 H 0.031 0.969 4 C 0.049 3.951 5 N -0.521 5.521 6 C 0.129 3.871 7 C 0.087 3.913 8 C -0.079 4.079 9 N -0.352 5.352 10 C 0.049 3.951 11 C -0.126 4.126 12 C -0.149 4.149 13 C 0.150 3.850 14 F -0.112 7.112 15 C 0.183 3.817 16 N -0.450 5.450 17 C 0.044 3.956 18 C 0.200 3.800 19 H 0.092 0.908 20 C -0.136 4.136 21 N -0.585 5.585 22 C -0.246 4.246 23 H 0.070 0.930 24 C 0.001 3.999 25 N -0.895 5.895 26 Si 0.894 3.106 27 H -0.280 1.280 28 H -0.292 1.292 29 H -0.291 1.291 30 H 0.053 0.947 31 H 0.036 0.964 32 H 0.061 0.939 33 H 0.027 0.973 34 H 0.058 0.942 35 H 0.046 0.954 36 H 0.088 0.912 37 H 0.186 0.814 38 H 0.168 0.832 39 H 0.158 0.842 40 H 0.152 0.848 41 H 0.025 0.975 42 H 0.062 0.938 43 H 0.033 0.967 44 H 0.020 0.980 45 H 0.073 0.927 46 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.597 2.294 23.237 23.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.065 3.935 3 H 0.049 0.951 4 C -0.080 4.080 5 N -0.246 5.246 6 C 0.000 4.000 7 C -0.047 4.047 8 C -0.211 4.211 9 N -0.024 5.024 10 C -0.072 4.072 11 C -0.147 4.147 12 C -0.173 4.173 13 C 0.128 3.872 14 F -0.090 7.090 15 C -0.062 4.062 16 N -0.169 5.169 17 C -0.085 4.085 18 C 0.093 3.907 19 H 0.110 0.890 20 C -0.195 4.195 21 N -0.308 5.308 22 C -0.375 4.375 23 H 0.088 0.912 24 C -0.197 4.197 25 N -0.539 5.539 26 Si 0.724 3.276 27 H -0.205 1.205 28 H -0.219 1.219 29 H -0.218 1.218 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.080 0.920 33 H 0.045 0.955 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.106 0.894 37 H 0.203 0.797 38 H 0.185 0.815 39 H 0.176 0.824 40 H 0.170 0.830 41 H 0.043 0.957 42 H 0.081 0.919 43 H 0.052 0.948 44 H 0.039 0.961 45 H 0.092 0.908 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.349 2.965 22.518 22.715 hybrid contribution -1.332 -1.331 -0.182 1.892 sum -0.982 1.634 22.336 22.417 Atomic orbital electron populations 1.21788 0.96225 1.01372 1.00015 1.20438 0.92056 0.94270 0.86734 0.95144 1.22689 0.86943 0.98910 0.99476 1.61838 1.11019 1.50717 1.00987 1.20412 1.01352 0.91254 0.86940 1.20877 0.91334 0.95711 0.96742 1.22594 1.05475 0.96085 0.96897 1.42608 1.17946 1.20691 1.21191 1.21679 0.98303 0.98122 0.89127 1.20529 0.97320 0.95228 1.01593 1.20999 0.96099 1.02790 0.97460 1.16187 0.85393 0.90514 0.95062 1.91568 1.46791 1.79768 1.90912 1.20637 0.88749 0.98709 0.98083 1.70709 1.28855 1.06777 1.10587 1.22866 0.98872 0.94312 0.92430 1.20367 0.82883 0.95262 0.92192 0.88981 1.21958 0.96567 0.99418 1.01536 1.44311 1.03595 1.65087 1.17825 1.19244 0.93193 1.39015 0.86066 0.91222 1.24980 0.97969 1.00319 0.96482 1.70088 1.20876 1.43453 1.19526 0.86359 0.79600 0.79728 0.81876 1.20519 1.21949 1.21793 0.92838 0.94523 0.91978 0.95493 0.92408 0.93634 0.89351 0.79653 0.81503 0.82420 0.82998 0.95686 0.91920 0.94773 0.96070 0.90783 0.93961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 7.94 37.16 0.30 -2.29 16 2 C 0.17 3.69 3.26 -67.49 -0.22 3.47 16 3 H 0.03 0.73 7.64 -51.93 -0.40 0.33 16 4 C 0.05 0.90 4.74 -3.70 -0.02 0.88 16 5 N -0.52 -9.64 4.12 -235.78 -0.97 -10.61 16 6 C 0.13 1.98 5.50 -4.98 -0.03 1.96 16 7 C 0.09 1.33 5.82 -82.98 -0.48 0.85 16 8 C -0.08 -0.96 10.40 -16.43 -0.17 -1.13 16 9 N -0.35 -4.12 2.95 -62.60 -0.18 -4.31 16 10 C 0.05 0.37 10.95 -16.61 -0.18 0.19 16 11 C -0.13 -0.78 9.98 -39.92 -0.40 -1.17 16 12 C -0.15 -1.21 10.04 -39.47 -0.40 -1.61 16 13 C 0.15 1.85 7.34 -39.22 -0.29 1.56 16 14 F -0.11 -1.53 17.28 2.25 0.04 -1.49 16 15 C 0.18 2.66 7.80 -156.00 -1.22 1.44 16 16 N -0.45 -7.76 11.32 -8.97 -0.10 -7.86 16 17 C 0.04 0.87 5.01 -3.70 -0.02 0.85 16 18 C 0.20 4.74 2.34 -67.48 -0.16 4.58 16 19 H 0.09 2.45 6.19 -51.93 -0.32 2.13 16 20 C -0.14 -3.24 8.97 37.16 0.33 -2.91 16 21 N -0.58 -14.42 2.73 -157.00 -0.43 -14.85 16 22 C -0.25 -6.55 8.72 -15.06 -0.13 -6.68 16 23 H 0.07 1.82 6.17 -52.49 -0.32 1.50 16 24 C 0.00 0.02 4.91 -17.43 -0.09 -0.06 16 25 N -0.89 -25.35 9.77 55.49 0.54 -24.81 16 26 Si 0.89 21.53 29.59 -169.99 -5.03 16.50 16 27 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 28 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 29 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 30 H 0.05 1.02 7.44 -51.93 -0.39 0.63 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 1.26 7.68 -51.93 -0.40 0.87 16 33 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.97 6.12 -51.93 -0.32 0.65 16 35 H 0.05 0.61 8.12 -51.93 -0.42 0.19 16 36 H 0.09 1.34 7.97 -51.93 -0.41 0.93 16 37 H 0.19 1.69 8.06 -52.49 -0.42 1.27 16 38 H 0.17 0.67 8.06 -52.49 -0.42 0.25 16 39 H 0.16 0.38 8.06 -52.48 -0.42 -0.04 16 40 H 0.15 0.81 8.06 -52.48 -0.42 0.39 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.06 1.15 7.99 -51.93 -0.41 0.74 16 43 H 0.03 0.81 7.10 -51.93 -0.37 0.45 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.07 1.99 6.81 -51.93 -0.35 1.63 16 46 H 0.25 6.93 8.32 -40.82 -0.34 6.59 16 LS Contribution 365.17 15.07 5.50 5.50 Total: -1.00 -32.38 365.17 -10.43 -42.81 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -6.64 Total: -0.81 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: -3.17 Total: -0.08 kcal Atomic # 7 Polarization: -61.30 SS G_CDS: -1.14 Total: -62.44 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.38 -10.43 -42.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331580034.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.833 kcal (2) G-P(sol) polarization free energy of solvation -32.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds