Wall clock time and date at job start Tue Mar 31 2020 18:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.77931 * 2 1 4 4 C 1.53234 * 109.62950 * 120.48330 * 2 1 3 5 5 N 1.46898 * 109.34352 * 173.54118 * 4 2 1 6 6 C 1.46898 * 111.00468 * 172.74459 * 5 4 2 7 7 C 1.50691 * 109.47338 * 294.30510 * 6 5 4 8 8 C 1.35138 * 125.69409 * 94.71049 * 7 6 5 9 9 N 1.36808 * 107.17948 * 179.84380 * 8 7 6 10 10 C 1.36583 * 132.56279 * 180.11477 * 9 8 7 11 11 C 1.34916 * 120.65094 * 180.33390 * 10 9 8 12 12 C 1.40479 * 120.32417 * 0.02562 * 11 10 9 13 13 C 1.36190 * 119.67285 * 0.02562 * 12 11 10 14 14 F 1.35104 * 120.35495 * 180.02562 * 13 12 11 15 15 C 1.37033 * 107.00313 * 0.41705 * 9 8 7 16 16 N 1.32568 * 108.04748 * 359.74086 * 15 9 8 17 17 C 1.46901 * 111.26840 * 296.89690 * 5 4 2 18 18 C 1.53243 * 109.34066 * 63.09985 * 17 5 4 19 19 H 1.08993 * 109.63171 * 186.46158 * 18 17 5 20 20 C 1.53010 * 109.78721 * 65.97540 * 18 17 5 21 21 N 1.47077 * 108.52326 * 306.17455 * 18 17 5 22 22 C 1.36936 * 120.88325 * 230.91187 * 21 18 17 23 23 H 1.08002 * 120.00451 * 152.93329 * 22 21 18 24 24 C 1.38817 * 119.99729 * 332.93675 * 22 21 18 25 25 N 1.31624 * 119.99830 * 342.40292 * 24 22 21 26 26 Si 1.86795 * 120.00039 * 162.40578 * 24 22 21 27 27 H 1.48498 * 109.47118 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47338 * 120.00051 * 26 24 22 29 29 H 1.48502 * 109.46825 * 239.99612 * 26 24 22 30 30 H 1.08999 * 109.46790 * 177.70971 * 1 2 3 31 31 H 1.08996 * 109.47082 * 297.70796 * 1 2 3 32 32 H 1.09002 * 109.46858 * 57.71158 * 1 2 3 33 33 H 1.09007 * 109.49272 * 53.58007 * 4 2 1 34 34 H 1.08998 * 109.51748 * 293.51865 * 4 2 1 35 35 H 1.09001 * 109.46573 * 54.30444 * 6 5 4 36 36 H 1.08992 * 109.47329 * 174.29984 * 6 5 4 37 37 H 1.07993 * 126.41151 * 359.97438 * 8 7 6 38 38 H 1.07999 * 119.66937 * 0.35860 * 10 9 8 39 39 H 1.08007 * 119.83194 * 179.97438 * 11 10 9 40 40 H 1.08003 * 120.16028 * 180.02562 * 12 11 10 41 41 H 1.08995 * 109.49079 * 303.14538 * 17 5 4 42 42 H 1.08996 * 109.51748 * 183.07113 * 17 5 4 43 43 H 1.09005 * 109.47125 * 300.87337 * 20 18 17 44 44 H 1.08996 * 109.47010 * 60.87172 * 20 18 17 45 45 H 1.09001 * 109.46794 * 180.87443 * 20 18 17 46 46 H 0.96997 * 119.99710 * 175.10989 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0258 0.0000 4 6 2.0448 -0.7322 1.2438 5 7 3.5055 -0.8643 1.1609 6 6 4.0569 -1.4060 2.4101 7 6 3.8418 -0.4155 3.5253 8 6 2.8047 -0.4166 4.3916 9 7 2.9874 0.6395 5.2419 10 6 2.2622 1.1106 6.2991 11 6 2.6699 2.2007 6.9816 12 6 3.8494 2.8684 6.6126 13 6 4.5822 2.4107 5.5599 14 9 5.7191 3.0420 5.1934 15 6 4.1427 1.2683 4.8575 16 7 4.6409 0.6127 3.8185 17 6 3.9017 -1.6870 0.0102 18 6 3.4630 -0.9940 -1.2842 19 1 3.6509 -1.6511 -2.1333 20 6 4.2413 0.3113 -1.4624 21 7 2.0241 -0.7028 -1.1938 22 6 1.1680 -1.0712 -2.1971 23 1 0.1287 -1.2648 -1.9763 24 6 1.6361 -1.1959 -3.4980 25 7 2.7797 -0.6424 -3.8418 26 14 0.6429 -2.1492 -4.7606 27 1 -0.5948 -2.6696 -4.1263 28 1 0.2826 -1.2516 -5.8873 29 1 1.4519 -3.2849 -5.2717 30 1 -0.3633 -1.0269 -0.0411 31 1 -0.3633 0.4778 0.9098 32 1 -0.3633 0.5490 -0.8688 33 1 1.5924 -1.7225 1.2962 34 1 1.7810 -0.1642 2.1359 35 1 3.5540 -2.3419 2.6534 36 1 5.1243 -1.5885 2.2871 37 1 1.9861 -1.1206 4.4107 38 1 1.3537 0.6053 6.5917 39 1 2.0860 2.5621 7.8153 40 1 4.1735 3.7406 7.1611 41 1 3.4234 -2.6640 0.0798 42 1 4.9845 -1.8115 0.0071 43 1 4.0569 0.9636 -0.6088 44 1 5.3070 0.0926 -1.5291 45 1 3.9142 0.8074 -2.3762 46 1 3.1416 -0.7886 -4.7298 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331580034.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:48 Heat of formation + Delta-G solvation = 69.602094 kcal Electronic energy + Delta-G solvation = -29176.234556 eV Core-core repulsion = 25210.201926 eV Total energy + Delta-G solvation = -3966.032631 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.171 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -50.00705 -43.82979 -40.15989 -38.42579 -36.36777 -34.34001 -34.22309 -33.33318 -31.45207 -29.95470 -29.62911 -27.98129 -27.45790 -25.90614 -24.52571 -23.94349 -23.45757 -22.35474 -21.37873 -20.34544 -19.27906 -18.48677 -18.04283 -17.46356 -17.37797 -17.05469 -16.59214 -16.38749 -15.92165 -15.89378 -15.68517 -15.64348 -15.12867 -14.97099 -14.73980 -14.55554 -13.77004 -13.64841 -13.45819 -13.37835 -13.21086 -12.94759 -12.86165 -12.77947 -12.70587 -12.47658 -12.28921 -12.20202 -12.17816 -11.88347 -11.73390 -11.63700 -11.27220 -11.11794 -10.96338 -10.44345 -9.77211 -9.13995 -8.82256 -8.55265 -7.72616 -5.20319 -0.35851 0.18351 1.48176 1.49504 1.51076 1.59965 1.74559 2.33834 2.57360 2.84625 3.16437 3.21939 3.38510 3.61965 3.63807 3.69949 3.91577 4.18685 4.21868 4.32717 4.33847 4.38256 4.50247 4.60029 4.61009 4.66747 4.75000 4.79066 4.86490 4.87490 4.91410 4.96248 4.97718 4.99291 5.07633 5.24407 5.31308 5.41924 5.47421 5.52384 5.54198 5.71158 5.78182 5.98043 6.03398 6.27100 6.32353 6.49932 6.83749 7.26344 7.96313 8.51420 9.29706 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.022298 B = 0.002954 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.425978 B = 9477.610200 C = 9879.097313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.164 3.836 3 H 0.000 1.000 4 C 0.066 3.934 5 N -0.538 5.538 6 C 0.136 3.864 7 C 0.055 3.945 8 C -0.070 4.070 9 N -0.352 5.352 10 C 0.048 3.952 11 C -0.117 4.117 12 C -0.111 4.111 13 C 0.090 3.910 14 F -0.134 7.134 15 C 0.165 3.835 16 N -0.514 5.514 17 C 0.058 3.942 18 C 0.198 3.802 19 H 0.059 0.941 20 C -0.117 4.117 21 N -0.599 5.599 22 C -0.247 4.247 23 H 0.075 0.925 24 C -0.052 4.052 25 N -0.924 5.924 26 Si 0.956 3.044 27 H -0.267 1.267 28 H -0.300 1.300 29 H -0.295 1.295 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.040 0.960 33 H 0.034 0.966 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.221 0.779 38 H 0.212 0.788 39 H 0.209 0.791 40 H 0.183 0.817 41 H 0.027 0.973 42 H 0.073 0.927 43 H 0.026 0.974 44 H 0.031 0.969 45 H 0.038 0.962 46 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.294 1.903 27.231 27.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.058 3.942 3 H 0.018 0.982 4 C -0.063 4.063 5 N -0.263 5.263 6 C 0.008 3.992 7 C -0.078 4.078 8 C -0.202 4.202 9 N -0.024 5.024 10 C -0.073 4.073 11 C -0.137 4.137 12 C -0.135 4.135 13 C 0.068 3.932 14 F -0.113 7.113 15 C -0.080 4.080 16 N -0.235 5.235 17 C -0.071 4.071 18 C 0.092 3.908 19 H 0.077 0.923 20 C -0.176 4.176 21 N -0.322 5.322 22 C -0.378 4.378 23 H 0.093 0.907 24 C -0.247 4.247 25 N -0.570 5.570 26 Si 0.786 3.214 27 H -0.192 1.192 28 H -0.228 1.228 29 H -0.222 1.222 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.237 0.763 38 H 0.228 0.772 39 H 0.226 0.774 40 H 0.200 0.800 41 H 0.046 0.954 42 H 0.091 0.909 43 H 0.045 0.955 44 H 0.050 0.950 45 H 0.057 0.943 46 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -2.369 2.568 26.551 26.780 hybrid contribution -0.538 -1.050 -1.211 1.691 sum -2.907 1.518 25.340 25.552 Atomic orbital electron populations 1.21677 0.94212 1.01527 1.00907 1.20632 0.93799 0.92807 0.86998 0.98249 1.22451 0.86779 0.98937 0.98167 1.61716 1.11346 1.51215 1.02011 1.20342 1.00895 0.92375 0.85577 1.20868 0.92868 0.96091 0.97940 1.22940 1.05081 0.96251 0.95889 1.42829 1.17419 1.20203 1.21912 1.22654 0.98924 0.98389 0.87302 1.21217 0.96357 0.94061 1.02113 1.21592 0.95101 1.02275 0.94552 1.16668 0.86762 0.91896 0.97865 1.91499 1.48100 1.80203 1.91494 1.20927 0.89848 0.99316 0.97934 1.70569 1.31162 1.08671 1.13075 1.22543 0.99417 0.93851 0.91266 1.20244 0.82887 0.94429 0.93271 0.92268 1.21736 0.97253 0.99410 0.99195 1.44560 1.03720 1.65522 1.18422 1.19560 0.93701 1.37919 0.86588 0.90705 1.25683 0.99129 1.01673 0.98254 1.70256 1.22463 1.44845 1.19462 0.85380 0.78641 0.78047 0.79372 1.19167 1.22769 1.22166 0.92630 0.90896 0.94106 0.94734 0.90414 0.91173 0.90194 0.76280 0.77177 0.77430 0.79999 0.95438 0.90883 0.95521 0.94957 0.94252 0.94710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.59 7.94 71.98 0.57 -4.02 16 2 C 0.16 7.01 3.26 44.96 0.15 7.15 16 3 H 0.00 -0.01 7.64 -2.38 -0.02 -0.03 16 4 C 0.07 2.31 4.74 86.38 0.41 2.72 16 5 N -0.54 -19.73 4.12 -899.86 -3.71 -23.44 16 6 C 0.14 4.08 5.50 85.55 0.47 4.55 16 7 C 0.06 1.65 5.82 41.59 0.24 1.89 16 8 C -0.07 -1.52 10.40 83.20 0.86 -0.65 16 9 N -0.35 -7.27 2.95 -351.96 -1.04 -8.31 16 10 C 0.05 0.48 10.95 83.19 0.91 1.39 16 11 C -0.12 -0.80 9.98 22.05 0.22 -0.58 16 12 C -0.11 -1.43 10.04 22.34 0.22 -1.20 16 13 C 0.09 2.17 7.34 22.50 0.17 2.34 16 14 F -0.13 -3.84 17.28 44.97 0.78 -3.06 16 15 C 0.16 4.75 7.80 134.17 1.05 5.79 16 16 N -0.51 -18.23 11.32 -182.28 -2.06 -20.29 16 17 C 0.06 2.32 5.01 86.38 0.43 2.75 16 18 C 0.20 9.73 2.34 44.97 0.11 9.84 16 19 H 0.06 3.29 6.19 -2.39 -0.01 3.28 16 20 C -0.12 -5.86 8.97 71.99 0.65 -5.21 16 21 N -0.60 -30.08 2.73 -650.62 -1.77 -31.85 16 22 C -0.25 -13.36 8.72 84.03 0.73 -12.62 16 23 H 0.08 3.90 6.17 -2.91 -0.02 3.88 16 24 C -0.05 -2.90 4.91 84.86 0.42 -2.48 16 25 N -0.92 -54.51 9.77 21.65 0.21 -54.30 16 26 Si 0.96 45.16 29.59 68.60 2.03 47.19 16 27 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 28 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 29 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 30 H 0.05 2.00 7.44 -2.39 -0.02 1.98 16 31 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.04 1.64 7.68 -2.39 -0.02 1.62 16 33 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 34 H 0.08 2.42 6.12 -2.39 -0.01 2.41 16 35 H 0.07 1.73 8.12 -2.39 -0.02 1.71 16 36 H 0.08 2.47 7.97 -2.39 -0.02 2.45 16 37 H 0.22 2.99 8.06 -2.91 -0.02 2.97 16 38 H 0.21 0.22 8.06 -2.91 -0.02 0.20 16 39 H 0.21 -0.61 8.06 -2.91 -0.02 -0.63 16 40 H 0.18 1.16 8.06 -2.91 -0.02 1.14 16 41 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.07 2.72 7.99 -2.39 -0.02 2.70 16 43 H 0.03 1.32 7.10 -2.38 -0.02 1.31 16 44 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.04 2.22 6.81 -2.39 -0.02 2.20 16 46 H 0.24 14.09 8.32 -92.71 -0.77 13.32 16 Total: -1.00 -77.40 365.17 3.03 -74.38 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: 0.99 Total: 8.05 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: 7.61 Total: 11.65 kcal Atomic # 7 Polarization: -129.83 SS G_CDS: -8.37 Total: -138.20 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.78 Total: -3.06 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -77.40 3.03 -74.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331580034.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.979 kcal (2) G-P(sol) polarization free energy of solvation -77.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds