Wall clock time and date at job start Tue Mar 31 2020 18:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46896 * 2 1 4 4 C 1.52993 * 109.47499 * 239.99677 * 2 1 3 5 5 C 1.53003 * 109.47174 * 119.99315 * 2 1 3 6 6 H 1.09005 * 109.47063 * 300.00471 * 5 2 1 7 7 C 1.52996 * 109.47157 * 180.02562 * 5 2 1 8 8 N 1.46505 * 109.46735 * 185.00300 * 7 5 2 9 9 C 1.36940 * 119.99553 * 180.02562 * 8 7 5 10 10 H 1.07997 * 120.00429 * 359.97438 * 9 8 7 11 11 C 1.38814 * 119.99981 * 179.97438 * 9 8 7 12 12 N 1.31624 * 119.99775 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00187 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47011 * 89.99839 * 13 11 9 15 15 H 1.48500 * 109.46742 * 209.99990 * 13 11 9 16 16 H 1.48496 * 109.46677 * 329.99913 * 13 11 9 17 17 N 1.46503 * 109.46789 * 60.00221 * 5 2 1 18 18 C 1.34778 * 120.00016 * 275.00106 * 17 5 2 19 19 O 1.21622 * 119.99918 * 0.02562 * 18 17 5 20 20 C 1.47314 * 119.99888 * 180.02562 * 18 17 5 21 21 C 1.39005 * 120.90820 * 0.02562 * 20 18 17 22 22 C 1.39714 * 119.29388 * 179.72644 * 21 20 18 23 23 C 1.35257 * 121.08003 * 0.02562 * 22 21 20 24 24 N 1.35720 * 121.57489 * 359.95541 * 23 22 21 25 25 N 1.40199 * 134.09156 * 180.02562 * 24 23 22 26 26 N 1.29022 * 106.96396 * 180.02562 * 25 24 23 27 27 N 1.28589 * 110.78493 * 359.90528 * 26 25 24 28 28 C 1.32045 * 110.21576 * 0.06539 * 27 26 25 29 29 H 1.08996 * 109.47348 * 300.00236 * 1 2 3 30 30 H 1.08996 * 109.46883 * 60.00818 * 1 2 3 31 31 H 1.08998 * 109.46743 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46808 * 180.02562 * 3 2 1 33 33 H 1.09006 * 109.46515 * 299.99255 * 3 2 1 34 34 H 1.08991 * 109.47418 * 59.99285 * 3 2 1 35 35 H 1.09007 * 109.46776 * 299.99848 * 4 2 1 36 36 H 1.08996 * 109.47457 * 59.99857 * 4 2 1 37 37 H 1.09005 * 109.47354 * 180.02562 * 4 2 1 38 38 H 1.08994 * 109.47144 * 304.99986 * 7 5 2 39 39 H 1.08998 * 109.47147 * 65.00203 * 7 5 2 40 40 H 0.97002 * 120.00170 * 359.97438 * 8 7 5 41 41 H 0.97002 * 119.99925 * 180.02562 * 12 11 9 42 42 H 0.96992 * 119.99790 * 95.00426 * 17 5 2 43 43 H 1.07998 * 120.35292 * 359.74383 * 21 20 18 44 44 H 1.07996 * 119.45917 * 179.97438 * 22 21 20 45 45 H 1.08001 * 119.21742 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0400 -0.7211 1.2493 6 1 1.6766 -0.2072 2.1393 7 6 3.5700 -0.7206 1.2497 8 7 4.0583 -1.5127 2.3812 9 6 5.4047 -1.6553 2.5867 10 1 6.1065 -1.1842 1.9145 11 6 5.8674 -2.4055 3.6591 12 7 5.0121 -2.9801 4.4781 13 14 7.7040 -2.6007 3.9392 14 1 8.1902 -1.5052 4.8160 15 1 7.9693 -3.9094 4.5887 16 1 8.4123 -2.5425 2.6353 17 7 1.5517 -2.1024 1.2494 18 6 0.3297 -2.3851 1.7427 19 8 -0.3678 -1.4934 2.1873 20 6 -0.1611 -3.7741 1.7432 21 6 0.6205 -4.8077 1.2403 22 6 0.1239 -6.1134 1.2627 23 6 -1.1023 -6.3856 1.7645 24 7 -1.8982 -5.4072 2.2658 25 7 -3.1787 -5.3880 2.8364 26 7 -3.4384 -4.1605 3.1372 27 7 -2.4553 -3.3950 2.8194 28 6 -1.4807 -4.1041 2.2800 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6766 1.9564 0.8898 35 1 1.6768 -1.7490 -1.2490 36 1 1.6768 -0.2076 -2.1392 37 1 3.1301 -0.7217 -1.2489 38 1 3.9337 -1.1547 0.3184 39 1 3.9329 0.3033 1.3394 40 1 3.4280 -1.9356 2.9852 41 1 5.3355 -3.5040 5.2277 42 1 2.1079 -2.8133 0.8945 43 1 1.6012 -4.6037 0.8367 44 1 0.7287 -6.9185 0.8722 45 1 -1.4565 -7.4058 1.7665 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332809720.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:51 Heat of formation + Delta-G solvation = 128.315615 kcal Electronic energy + Delta-G solvation = -29300.294275 eV Core-core repulsion = 25356.727615 eV Total energy + Delta-G solvation = -3943.566660 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.45881 -40.27781 -38.73105 -37.37787 -34.53993 -34.18349 -33.24530 -32.15379 -31.25574 -30.55554 -27.81307 -27.16953 -26.82301 -25.47434 -24.47213 -23.97077 -23.20116 -21.57122 -20.88260 -18.91440 -18.72072 -17.74449 -17.64480 -16.99816 -16.91073 -15.97807 -15.74023 -15.54087 -14.82474 -14.34737 -13.97793 -13.92835 -13.90218 -13.54108 -13.21950 -13.19791 -13.06597 -12.76147 -12.61534 -12.51384 -12.22580 -11.98115 -11.83840 -11.54716 -11.40111 -11.25902 -11.11831 -11.05775 -10.87741 -10.78531 -10.54349 -10.43455 -10.28386 -9.99081 -9.81365 -9.78608 -8.96984 -8.87883 -8.64876 -7.02566 -5.85356 -3.15249 -0.22049 0.30600 1.45148 2.01811 2.40799 3.07724 3.36946 3.37871 3.40103 3.42630 3.44081 3.79836 4.11069 4.28621 4.49333 4.59104 4.85266 4.90271 5.01007 5.07537 5.11996 5.24496 5.33502 5.40020 5.46955 5.51842 5.62387 5.69492 5.75113 5.87115 5.88607 6.00624 6.03879 6.07546 6.10198 6.14332 6.27657 6.39771 6.43565 6.44987 6.60675 6.68566 6.86878 7.61408 7.66317 8.26778 8.32221 8.35603 9.44476 10.00053 10.35233 11.36693 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.009831 B = 0.004172 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2847.352377 B = 6710.011948 C = 8600.027861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.076 4.076 3 C -0.141 4.141 4 C -0.141 4.141 5 C 0.151 3.849 6 H 0.091 0.909 7 C 0.141 3.859 8 N -0.732 5.732 9 C -0.243 4.243 10 H 0.071 0.929 11 C -0.010 4.010 12 N -0.931 5.931 13 Si 0.906 3.094 14 H -0.290 1.290 15 H -0.292 1.292 16 H -0.282 1.282 17 N -0.699 5.699 18 C 0.560 3.440 19 O -0.501 6.501 20 C -0.092 4.092 21 C -0.018 4.018 22 C -0.138 4.138 23 C 0.121 3.879 24 N -0.308 5.308 25 N -0.113 5.113 26 N -0.012 5.012 27 N -0.289 5.289 28 C 0.274 3.726 29 H 0.064 0.936 30 H 0.042 0.958 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.063 0.937 38 H 0.030 0.970 39 H 0.038 0.962 40 H 0.385 0.615 41 H 0.255 0.745 42 H 0.401 0.599 43 H 0.166 0.834 44 H 0.175 0.825 45 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.649 -5.680 -13.179 16.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.078 4.078 3 C -0.199 4.199 4 C -0.199 4.199 5 C 0.046 3.954 6 H 0.109 0.891 7 C 0.014 3.986 8 N -0.377 5.377 9 C -0.374 4.374 10 H 0.089 0.911 11 C -0.207 4.207 12 N -0.579 5.579 13 Si 0.737 3.263 14 H -0.217 1.217 15 H -0.218 1.218 16 H -0.207 1.207 17 N -0.351 5.351 18 C 0.344 3.656 19 O -0.375 6.375 20 C -0.101 4.101 21 C -0.044 4.044 22 C -0.162 4.162 23 C -0.006 4.006 24 N -0.089 5.089 25 N -0.096 5.096 26 N -0.005 5.005 27 N -0.146 5.146 28 C 0.016 3.984 29 H 0.083 0.917 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.048 0.952 39 H 0.055 0.945 40 H 0.219 0.781 41 H 0.065 0.935 42 H 0.237 0.763 43 H 0.183 0.817 44 H 0.192 0.808 45 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -10.494 -4.768 -12.151 16.749 hybrid contribution 1.936 -1.173 -0.013 2.263 sum -8.559 -5.941 -12.165 16.017 Atomic orbital electron populations 1.21897 0.93894 1.01759 1.01250 1.20911 0.96157 0.95640 0.95094 1.21886 1.01528 0.94799 1.01642 1.21916 1.01504 0.99896 0.96544 1.21354 0.95106 0.80775 0.98119 0.89122 1.21112 0.89028 0.96208 0.92290 1.42375 1.04882 1.60320 1.30103 1.19200 0.83289 1.26103 1.08770 0.91138 1.24733 0.97530 1.00530 0.97859 1.69667 1.32592 1.37980 1.17643 0.86219 0.85210 0.77130 0.77768 1.21697 1.21826 1.20749 1.45751 1.16184 1.10831 1.62328 1.17288 0.82444 0.86413 0.79441 1.90906 1.55804 1.46388 1.44448 1.20437 0.89650 0.96483 1.03493 1.22103 0.99279 0.91207 0.91762 1.21042 0.94529 0.98557 1.02035 1.21752 0.90213 0.93968 0.94647 1.48972 1.13682 1.08204 1.38001 1.82775 0.91534 1.15497 1.19758 1.78035 1.17786 0.95143 1.09551 1.75294 0.97296 1.23615 1.18358 1.23625 0.96236 0.81280 0.97288 0.91743 0.93915 0.93092 0.91875 0.92852 0.92446 0.93017 0.93127 0.91830 0.95247 0.94484 0.78067 0.93485 0.76341 0.81676 0.80754 0.79992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.77 7.00 37.16 0.26 -1.51 16 2 C -0.08 -0.97 0.62 -154.51 -0.10 -1.07 16 3 C -0.14 -1.68 8.12 37.16 0.30 -1.38 16 4 C -0.14 -1.55 7.97 37.15 0.30 -1.26 16 5 C 0.15 2.31 1.69 -67.93 -0.11 2.19 16 6 H 0.09 1.64 7.58 -51.93 -0.39 1.25 16 7 C 0.14 2.48 5.10 -4.04 -0.02 2.46 16 8 N -0.73 -16.72 5.43 -59.91 -0.33 -17.05 16 9 C -0.24 -6.27 9.99 -15.06 -0.15 -6.42 16 10 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 11 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 12 N -0.93 -26.70 13.06 55.49 0.72 -25.98 16 13 Si 0.91 21.27 29.55 -169.99 -5.02 16.24 16 14 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 15 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 17 N -0.70 -9.82 3.60 -54.91 -0.20 -10.02 16 18 C 0.56 8.69 6.13 -12.57 -0.08 8.61 16 19 O -0.50 -9.49 13.40 5.26 0.07 -9.42 16 20 C -0.09 -1.21 6.06 -102.71 -0.62 -1.83 16 21 C -0.02 -0.15 9.63 -38.75 -0.37 -0.53 16 22 C -0.14 -0.81 9.92 -40.09 -0.40 -1.21 16 23 C 0.12 0.90 11.15 -16.89 -0.19 0.71 16 24 N -0.31 -3.90 3.94 -10.99 -0.04 -3.94 16 25 N -0.11 -1.68 13.99 60.35 0.84 -0.84 16 26 N -0.01 -0.21 13.36 60.35 0.81 0.60 16 27 N -0.29 -5.24 11.75 32.20 0.38 -4.86 16 28 C 0.27 4.19 7.85 -154.51 -1.21 2.98 16 29 H 0.06 0.99 7.53 -51.93 -0.39 0.60 16 30 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.73 5.77 -51.93 -0.30 0.43 16 32 H 0.06 0.75 6.55 -51.93 -0.34 0.41 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.54 7.60 -51.93 -0.39 0.14 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.71 6.32 -51.93 -0.33 0.38 16 38 H 0.03 0.49 6.17 -51.93 -0.32 0.17 16 39 H 0.04 0.67 6.71 -51.93 -0.35 0.32 16 40 H 0.39 9.50 7.33 -40.82 -0.30 9.20 16 41 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 42 H 0.40 4.92 6.71 -40.82 -0.27 4.64 16 43 H 0.17 1.07 6.49 -52.49 -0.34 0.73 16 44 H 0.18 0.31 8.06 -52.49 -0.42 -0.11 16 45 H 0.18 0.64 8.06 -52.49 -0.42 0.22 16 LS Contribution 365.69 15.07 5.51 5.51 Total: -1.00 -34.64 365.69 -5.56 -40.19 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -5.81 Total: 8.16 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: -2.49 Total: 1.39 kcal Atomic # 7 Polarization: -64.26 SS G_CDS: 2.19 Total: -62.08 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.07 Total: -9.42 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.64 -5.56 -40.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332809720.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.508 kcal (2) G-P(sol) polarization free energy of solvation -34.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds