Wall clock time and date at job start Tue Mar 31 2020 18:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46896 * 2 1 4 4 C 1.52993 * 109.47499 * 239.99677 * 2 1 3 5 5 C 1.53003 * 109.47174 * 119.99315 * 2 1 3 6 6 H 1.09005 * 109.47063 * 300.00471 * 5 2 1 7 7 C 1.52996 * 109.47157 * 180.02562 * 5 2 1 8 8 N 1.46505 * 109.46735 * 185.00300 * 7 5 2 9 9 C 1.36940 * 119.99553 * 180.02562 * 8 7 5 10 10 H 1.07997 * 120.00429 * 359.97438 * 9 8 7 11 11 C 1.38814 * 119.99981 * 179.97438 * 9 8 7 12 12 N 1.31624 * 119.99775 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00187 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47011 * 89.99839 * 13 11 9 15 15 H 1.48500 * 109.46742 * 209.99990 * 13 11 9 16 16 H 1.48496 * 109.46677 * 329.99913 * 13 11 9 17 17 N 1.46503 * 109.46789 * 60.00221 * 5 2 1 18 18 C 1.34778 * 120.00016 * 275.00106 * 17 5 2 19 19 O 1.21622 * 119.99918 * 0.02562 * 18 17 5 20 20 C 1.47314 * 119.99888 * 180.02562 * 18 17 5 21 21 C 1.39005 * 120.90820 * 0.02562 * 20 18 17 22 22 C 1.39714 * 119.29388 * 179.72644 * 21 20 18 23 23 C 1.35257 * 121.08003 * 0.02562 * 22 21 20 24 24 N 1.35720 * 121.57489 * 359.95541 * 23 22 21 25 25 N 1.40199 * 134.09156 * 180.02562 * 24 23 22 26 26 N 1.29022 * 106.96396 * 180.02562 * 25 24 23 27 27 N 1.28589 * 110.78493 * 359.90528 * 26 25 24 28 28 C 1.32045 * 110.21576 * 0.06539 * 27 26 25 29 29 H 1.08996 * 109.47348 * 300.00236 * 1 2 3 30 30 H 1.08996 * 109.46883 * 60.00818 * 1 2 3 31 31 H 1.08998 * 109.46743 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46808 * 180.02562 * 3 2 1 33 33 H 1.09006 * 109.46515 * 299.99255 * 3 2 1 34 34 H 1.08991 * 109.47418 * 59.99285 * 3 2 1 35 35 H 1.09007 * 109.46776 * 299.99848 * 4 2 1 36 36 H 1.08996 * 109.47457 * 59.99857 * 4 2 1 37 37 H 1.09005 * 109.47354 * 180.02562 * 4 2 1 38 38 H 1.08994 * 109.47144 * 304.99986 * 7 5 2 39 39 H 1.08998 * 109.47147 * 65.00203 * 7 5 2 40 40 H 0.97002 * 120.00170 * 359.97438 * 8 7 5 41 41 H 0.97002 * 119.99925 * 180.02562 * 12 11 9 42 42 H 0.96992 * 119.99790 * 95.00426 * 17 5 2 43 43 H 1.07998 * 120.35292 * 359.74383 * 21 20 18 44 44 H 1.07996 * 119.45917 * 179.97438 * 22 21 20 45 45 H 1.08001 * 119.21742 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0400 -0.7211 1.2493 6 1 1.6766 -0.2072 2.1393 7 6 3.5700 -0.7206 1.2497 8 7 4.0583 -1.5127 2.3812 9 6 5.4047 -1.6553 2.5867 10 1 6.1065 -1.1842 1.9145 11 6 5.8674 -2.4055 3.6591 12 7 5.0121 -2.9801 4.4781 13 14 7.7040 -2.6007 3.9392 14 1 8.1902 -1.5052 4.8160 15 1 7.9693 -3.9094 4.5887 16 1 8.4123 -2.5425 2.6353 17 7 1.5517 -2.1024 1.2494 18 6 0.3297 -2.3851 1.7427 19 8 -0.3678 -1.4934 2.1873 20 6 -0.1611 -3.7741 1.7432 21 6 0.6205 -4.8077 1.2403 22 6 0.1239 -6.1134 1.2627 23 6 -1.1023 -6.3856 1.7645 24 7 -1.8982 -5.4072 2.2658 25 7 -3.1787 -5.3880 2.8364 26 7 -3.4384 -4.1605 3.1372 27 7 -2.4553 -3.3950 2.8194 28 6 -1.4807 -4.1041 2.2800 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6766 1.9564 0.8898 35 1 1.6768 -1.7490 -1.2490 36 1 1.6768 -0.2076 -2.1392 37 1 3.1301 -0.7217 -1.2489 38 1 3.9337 -1.1547 0.3184 39 1 3.9329 0.3033 1.3394 40 1 3.4280 -1.9356 2.9852 41 1 5.3355 -3.5040 5.2277 42 1 2.1079 -2.8133 0.8945 43 1 1.6012 -4.6037 0.8367 44 1 0.7287 -6.9185 0.8722 45 1 -1.4565 -7.4058 1.7665 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332809720.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:50 Heat of formation + Delta-G solvation = 103.278224 kcal Electronic energy + Delta-G solvation = -29301.379978 eV Core-core repulsion = 25356.727615 eV Total energy + Delta-G solvation = -3944.652363 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.48586 -41.44363 -39.64124 -38.56121 -36.15516 -35.28255 -34.46551 -33.14822 -32.91208 -31.60479 -29.29813 -28.09474 -27.89425 -26.50904 -25.59497 -25.35816 -24.41401 -23.01506 -21.95866 -19.93331 -19.88389 -19.18722 -18.62146 -18.22992 -18.03459 -17.04220 -16.85104 -16.60977 -16.39604 -15.60502 -15.31383 -15.28119 -14.86065 -14.79971 -14.61022 -14.20797 -14.12036 -13.94212 -13.68633 -13.62395 -13.30805 -13.03129 -12.98954 -12.89714 -12.71749 -12.60306 -12.45896 -12.31947 -12.16282 -12.12557 -11.98357 -11.71019 -11.59685 -11.30020 -11.25635 -11.03374 -10.84860 -9.98053 -9.67532 -8.93463 -7.89028 -5.17647 -1.05275 -0.59964 0.57822 0.96538 1.50020 1.52028 1.54424 1.61527 2.00272 2.33717 2.48873 2.60473 2.86028 3.40656 3.46181 3.58187 3.67843 3.72969 3.89379 4.02562 4.07195 4.20541 4.29110 4.35107 4.39688 4.51407 4.56769 4.68556 4.74802 4.85051 4.88537 4.95678 4.96700 5.01334 5.11253 5.13027 5.21320 5.28957 5.34904 5.35747 5.45739 5.56691 5.59675 5.66824 6.31480 6.54213 7.16999 7.22848 7.39687 8.13372 8.36969 9.33708 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.009831 B = 0.004172 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2847.352377 B = 6710.011948 C = 8600.027861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.069 4.069 3 C -0.140 4.140 4 C -0.137 4.137 5 C 0.160 3.840 6 H 0.053 0.947 7 C 0.145 3.855 8 N -0.742 5.742 9 C -0.237 4.237 10 H 0.080 0.920 11 C -0.069 4.069 12 N -0.968 5.968 13 Si 0.966 3.034 14 H -0.297 1.297 15 H -0.298 1.298 16 H -0.264 1.264 17 N -0.690 5.690 18 C 0.559 3.441 19 O -0.549 6.549 20 C -0.134 4.134 21 C 0.015 3.985 22 C -0.115 4.115 23 C 0.120 3.880 24 N -0.305 5.305 25 N -0.121 5.121 26 N -0.039 5.039 27 N -0.341 5.341 28 C 0.255 3.745 29 H 0.035 0.965 30 H 0.060 0.940 31 H 0.039 0.961 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.043 0.957 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.054 0.946 39 H 0.036 0.964 40 H 0.373 0.627 41 H 0.248 0.752 42 H 0.411 0.589 43 H 0.193 0.807 44 H 0.235 0.765 45 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.437 -8.042 -16.267 19.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.071 4.071 3 C -0.198 4.198 4 C -0.194 4.194 5 C 0.055 3.945 6 H 0.071 0.929 7 C 0.019 3.981 8 N -0.385 5.385 9 C -0.369 4.369 10 H 0.098 0.902 11 C -0.262 4.262 12 N -0.619 5.619 13 Si 0.796 3.204 14 H -0.225 1.225 15 H -0.225 1.225 16 H -0.189 1.189 17 N -0.342 5.342 18 C 0.345 3.655 19 O -0.427 6.427 20 C -0.144 4.144 21 C -0.010 4.010 22 C -0.137 4.137 23 C -0.006 4.006 24 N -0.085 5.085 25 N -0.104 5.104 26 N -0.032 5.032 27 N -0.200 5.200 28 C -0.001 4.001 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.054 0.946 40 H 0.205 0.795 41 H 0.057 0.943 42 H 0.249 0.751 43 H 0.210 0.790 44 H 0.251 0.749 45 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -8.257 -7.127 -15.304 18.793 hybrid contribution 1.329 -0.532 0.839 1.659 sum -6.928 -7.659 -14.465 17.773 Atomic orbital electron populations 1.21778 0.94568 1.00874 1.00646 1.20856 0.95385 0.96124 0.94739 1.21891 1.01589 0.94281 1.02023 1.21883 1.01554 1.00240 0.95713 1.21126 0.93633 0.81614 0.98126 0.92915 1.21237 0.90232 0.95361 0.91275 1.42548 1.03907 1.60767 1.31280 1.19607 0.84680 1.24453 1.08131 0.90211 1.25439 1.01147 1.01351 0.98252 1.69823 1.34179 1.39508 1.18342 0.85245 0.81011 0.76153 0.77948 1.22528 1.22518 1.18905 1.45589 1.15945 1.10587 1.62075 1.17670 0.82190 0.87291 0.78369 1.90882 1.57080 1.48129 1.46584 1.20256 0.90127 0.96288 1.07698 1.22645 0.99132 0.91299 0.87970 1.21783 0.93860 0.98478 0.99601 1.22934 0.90076 0.94877 0.92687 1.49113 1.13207 1.08414 1.37759 1.82574 0.92871 1.14758 1.20226 1.77953 1.18521 0.95865 1.10852 1.75131 0.98696 1.25510 1.20649 1.23751 0.96541 0.82190 0.97664 0.94622 0.92074 0.94186 0.91651 0.90819 0.93819 0.92257 0.91475 0.91538 0.92802 0.94614 0.79465 0.94304 0.75115 0.79032 0.74893 0.75398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.34 7.00 71.98 0.50 -2.84 16 2 C -0.07 -1.71 0.62 -52.18 -0.03 -1.74 16 3 C -0.14 -3.21 8.12 71.98 0.58 -2.62 16 4 C -0.14 -2.61 7.97 71.98 0.57 -2.03 16 5 C 0.16 4.94 1.69 44.99 0.08 5.01 16 6 H 0.05 2.04 7.58 -2.38 -0.02 2.02 16 7 C 0.15 4.93 5.10 86.38 0.44 5.38 16 8 N -0.74 -33.53 5.43 -343.45 -1.87 -35.40 16 9 C -0.24 -11.96 9.99 84.03 0.84 -11.12 16 10 H 0.08 3.82 7.83 -2.91 -0.02 3.80 16 11 C -0.07 -3.70 5.50 84.86 0.47 -3.23 16 12 N -0.97 -55.88 13.06 21.65 0.28 -55.60 16 13 Si 0.97 43.19 29.55 68.60 2.03 45.21 16 14 H -0.30 -13.55 7.11 99.48 0.71 -12.84 16 15 H -0.30 -13.53 7.11 99.48 0.71 -12.82 16 16 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 17 N -0.69 -19.24 3.60 -445.89 -1.60 -20.84 16 18 C 0.56 18.01 6.13 86.63 0.53 18.54 16 19 O -0.55 -22.55 13.40 -4.10 -0.05 -22.61 16 20 C -0.13 -3.50 6.06 -18.63 -0.11 -3.61 16 21 C 0.01 0.21 9.63 22.81 0.22 0.43 16 22 C -0.11 -0.72 9.92 21.94 0.22 -0.50 16 23 C 0.12 1.30 11.15 83.40 0.93 2.23 16 24 N -0.30 -7.43 3.94 -188.67 -0.74 -8.18 16 25 N -0.12 -3.68 13.99 37.02 0.52 -3.16 16 26 N -0.04 -1.44 13.36 37.02 0.49 -0.94 16 27 N -0.34 -13.36 11.75 -52.04 -0.61 -13.97 16 28 C 0.26 8.05 7.85 135.75 1.07 9.11 16 29 H 0.03 1.17 7.53 -2.39 -0.02 1.15 16 30 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.04 1.18 5.77 -2.39 -0.01 1.17 16 32 H 0.06 1.46 6.55 -2.39 -0.02 1.44 16 33 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 34 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.06 1.04 7.60 -2.38 -0.02 1.03 16 36 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.07 1.24 6.32 -2.38 -0.02 1.23 16 38 H 0.05 1.63 6.17 -2.39 -0.01 1.61 16 39 H 0.04 1.26 6.71 -2.39 -0.02 1.24 16 40 H 0.37 18.62 7.33 -92.71 -0.68 17.94 16 41 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 42 H 0.41 9.34 6.71 -92.71 -0.62 8.72 16 43 H 0.19 1.60 6.49 -2.91 -0.02 1.58 16 44 H 0.23 -1.13 8.06 -2.91 -0.02 -1.16 16 45 H 0.23 0.30 8.06 -2.91 -0.02 0.27 16 Total: -1.00 -82.55 365.69 4.50 -78.06 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: -0.25 Total: 24.43 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: 6.30 Total: 12.99 kcal Atomic # 7 Polarization: -134.55 SS G_CDS: -3.53 Total: -138.08 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.05 Total: -22.61 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Total: -82.55 4.50 -78.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332809720.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.334 kcal (2) G-P(sol) polarization free energy of solvation -82.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds