Wall clock time and date at job start Tue Mar 31 2020 18:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47159 * 2 1 4 4 C 1.53000 * 109.46777 * 240.00332 * 2 1 3 5 5 C 1.53001 * 109.47326 * 120.00027 * 2 1 3 6 6 H 1.09002 * 109.46840 * 179.97438 * 5 2 1 7 7 C 1.52996 * 109.47122 * 300.00027 * 5 2 1 8 8 N 1.46503 * 109.46974 * 174.99781 * 7 5 2 9 9 C 1.36936 * 120.00017 * 179.97438 * 8 7 5 10 10 H 1.08002 * 119.99984 * 0.02562 * 9 8 7 11 11 C 1.38815 * 120.00009 * 179.97438 * 9 8 7 12 12 N 1.31621 * 119.99798 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99786 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.46853 * 90.00490 * 13 11 9 15 15 H 1.48498 * 109.46918 * 210.00057 * 13 11 9 16 16 H 1.48499 * 109.47149 * 330.00419 * 13 11 9 17 17 N 1.46502 * 109.46697 * 60.00146 * 5 2 1 18 18 C 1.34779 * 120.00137 * 85.00277 * 17 5 2 19 19 O 1.21576 * 119.99756 * 359.97438 * 18 17 5 20 20 C 1.47688 * 119.99880 * 179.97438 * 18 17 5 21 21 C 1.41590 * 120.03737 * 0.02562 * 20 18 17 22 22 C 1.35785 * 119.55389 * 180.02562 * 21 20 18 23 23 C 1.40853 * 119.38779 * 359.97438 * 22 21 20 24 24 N 1.32489 * 133.41849 * 179.97438 * 23 22 21 25 25 N 1.28527 * 110.24660 * 180.02562 * 24 23 22 26 26 N 1.28984 * 110.84292 * 0.02562 * 25 24 23 27 27 N 1.36932 * 119.93600 * 359.97438 * 23 22 21 28 28 C 1.35496 * 120.83755 * 0.02562 * 27 23 22 29 29 H 1.08996 * 109.47114 * 299.99541 * 1 2 3 30 30 H 1.08998 * 109.47605 * 59.99865 * 1 2 3 31 31 H 1.09005 * 109.46831 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47583 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47413 * 300.00280 * 3 2 1 34 34 H 1.09005 * 109.46806 * 60.00009 * 3 2 1 35 35 H 1.09005 * 109.47122 * 299.99432 * 4 2 1 36 36 H 1.09001 * 109.47714 * 60.00130 * 4 2 1 37 37 H 1.09007 * 109.46859 * 179.97438 * 4 2 1 38 38 H 1.08997 * 109.47150 * 294.99622 * 7 5 2 39 39 H 1.09005 * 109.47059 * 54.99921 * 7 5 2 40 40 H 0.97003 * 119.99476 * 0.02562 * 8 7 5 41 41 H 0.97003 * 119.99466 * 179.97438 * 12 11 9 42 42 H 0.96998 * 119.99838 * 264.99629 * 17 5 2 43 43 H 1.08001 * 120.22289 * 359.97438 * 21 20 18 44 44 H 1.08003 * 120.30682 * 180.02562 * 22 21 20 45 45 H 1.08005 * 119.81774 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2492 6 1 3.1301 -0.7216 1.2489 7 6 1.5301 0.0000 2.4985 8 7 1.9177 -0.7567 3.6916 9 6 1.5691 -0.3006 4.9348 10 1 1.0081 0.6167 5.0357 11 6 1.9359 -1.0178 6.0653 12 7 2.6192 -2.1361 5.9422 13 14 1.4598 -0.3960 7.7611 14 1 0.1370 -0.9547 8.1398 15 1 2.4803 -0.8259 8.7505 16 1 1.3834 1.0869 7.7412 17 7 1.5517 -2.1025 1.2491 18 6 2.2286 -3.0565 0.5796 19 8 3.2441 -2.7708 -0.0246 20 6 1.7365 -4.4490 0.5800 21 6 0.5536 -4.7825 1.2830 22 6 0.1104 -6.0660 1.2773 23 6 0.8360 -7.0447 0.5704 24 7 0.6657 -8.3449 0.3811 25 7 1.6108 -8.8152 -0.3521 26 7 2.4407 -7.8850 -0.6834 27 7 1.9766 -6.6964 -0.1025 28 6 2.4218 -5.4167 -0.0989 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1393 37 1 3.1300 -0.7208 -1.2496 38 1 1.9647 0.9985 2.5444 39 1 0.4437 0.0782 2.4548 40 1 2.4219 -1.5804 3.6008 41 1 2.8758 -2.6370 6.7322 42 1 0.7413 -2.3304 1.7310 43 1 0.0079 -4.0214 1.8209 44 1 -0.7907 -6.3338 1.8090 45 1 3.3238 -5.1604 -0.6350 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332823307.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:05 Heat of formation + Delta-G solvation = 122.638938 kcal Electronic energy + Delta-G solvation = -28994.357857 eV Core-core repulsion = 25050.545038 eV Total energy + Delta-G solvation = -3943.812819 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.65883 -40.66117 -38.86814 -37.39952 -34.68799 -34.45842 -33.51515 -32.30687 -31.13851 -30.80685 -27.98335 -27.26528 -27.04482 -25.55170 -24.66907 -23.81949 -23.08288 -21.78167 -21.26360 -19.13126 -18.86382 -17.76814 -17.73099 -17.14293 -16.91940 -16.14276 -15.74763 -15.34972 -15.08461 -14.65802 -14.15091 -14.04571 -13.86431 -13.82350 -13.66991 -13.25263 -13.13834 -12.81504 -12.79287 -12.33527 -12.13062 -12.07627 -11.93627 -11.91622 -11.51641 -11.35727 -11.32631 -11.25049 -10.90661 -10.87511 -10.69666 -10.40251 -10.34160 -10.11520 -10.06762 -9.86215 -9.02820 -8.98615 -8.83503 -7.08011 -5.89806 -3.20015 -0.15124 0.16212 1.32988 1.71320 2.43130 3.00694 3.18979 3.34526 3.35885 3.40891 3.42593 3.81224 4.09298 4.28200 4.45506 4.51500 4.65287 4.79434 4.90926 4.98087 5.03098 5.26023 5.33657 5.41065 5.42511 5.43099 5.55418 5.64477 5.66054 5.75631 5.78445 5.89067 5.93848 5.95798 5.99822 6.03139 6.16522 6.27306 6.32626 6.33683 6.47260 6.56888 6.73149 7.46657 7.57634 8.08017 8.09794 8.27871 9.40207 9.94283 10.29247 11.32198 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.009269 B = 0.003977 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3020.155163 B = 7038.803115 C = 9340.313192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.076 4.076 3 C -0.141 4.141 4 C -0.131 4.131 5 C 0.149 3.851 6 H 0.092 0.908 7 C 0.141 3.859 8 N -0.732 5.732 9 C -0.245 4.245 10 H 0.071 0.929 11 C -0.009 4.009 12 N -0.930 5.930 13 Si 0.906 3.094 14 H -0.289 1.289 15 H -0.291 1.291 16 H -0.282 1.282 17 N -0.693 5.693 18 C 0.571 3.429 19 O -0.529 6.529 20 C -0.142 4.142 21 C -0.027 4.027 22 C -0.094 4.094 23 C 0.252 3.748 24 N -0.325 5.325 25 N -0.006 5.006 26 N -0.107 5.107 27 N -0.304 5.304 28 C 0.174 3.826 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.050 0.950 36 H 0.043 0.957 37 H 0.063 0.937 38 H 0.038 0.962 39 H 0.031 0.969 40 H 0.385 0.615 41 H 0.256 0.744 42 H 0.404 0.596 43 H 0.165 0.835 44 H 0.174 0.826 45 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.881 -0.212 -13.943 15.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.078 4.078 3 C -0.199 4.199 4 C -0.189 4.189 5 C 0.045 3.955 6 H 0.110 0.890 7 C 0.013 3.987 8 N -0.377 5.377 9 C -0.376 4.376 10 H 0.089 0.911 11 C -0.205 4.205 12 N -0.578 5.578 13 Si 0.737 3.263 14 H -0.217 1.217 15 H -0.218 1.218 16 H -0.207 1.207 17 N -0.343 5.343 18 C 0.355 3.645 19 O -0.406 6.406 20 C -0.151 4.151 21 C -0.054 4.054 22 C -0.117 4.117 23 C -0.002 4.002 24 N -0.185 5.185 25 N 0.001 4.999 26 N -0.090 5.090 27 N -0.083 5.083 28 C 0.044 3.956 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.082 0.918 38 H 0.056 0.944 39 H 0.048 0.952 40 H 0.219 0.781 41 H 0.066 0.934 42 H 0.241 0.759 43 H 0.182 0.818 44 H 0.192 0.808 45 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -4.831 -1.424 -14.828 15.660 hybrid contribution -0.438 0.747 1.569 1.792 sum -5.269 -0.677 -13.259 14.284 Atomic orbital electron populations 1.21930 0.94573 1.01611 1.01893 1.20907 0.95929 0.95786 0.95165 1.21891 1.01287 0.94792 1.01952 1.21907 1.01752 0.99478 0.95718 1.21409 1.00130 0.79161 0.94815 0.89036 1.21120 0.97551 0.94854 0.85194 1.42357 1.67063 1.27744 1.00523 1.19186 1.29242 1.05643 0.83513 0.91119 1.24732 1.00625 0.97328 0.97840 1.69654 1.43031 1.16472 1.28663 0.86216 0.77609 0.78083 0.84396 1.21662 1.21770 1.20734 1.45792 1.28778 1.08627 1.51143 1.17351 0.83935 0.83325 0.79863 1.90829 1.24185 1.81848 1.43779 1.19828 0.97739 0.95367 1.02171 1.21556 0.93299 0.96832 0.93673 1.20334 1.01638 0.89496 1.00210 1.23126 0.88003 0.93631 0.95411 1.75178 1.20092 1.04271 1.18925 1.77866 0.96813 1.20994 1.04271 1.82860 1.20129 0.84368 1.21675 1.48787 1.18168 1.09225 1.32077 1.21714 0.99337 0.78142 0.96436 0.91747 0.93034 0.92943 0.92458 0.92775 0.91788 0.93110 0.93776 0.91834 0.94413 0.95180 0.78118 0.93419 0.75920 0.81786 0.80844 0.78712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 7.97 37.16 0.30 -1.12 16 2 C -0.08 -0.86 0.62 -154.51 -0.10 -0.95 16 3 C -0.14 -1.51 8.12 37.16 0.30 -1.21 16 4 C -0.13 -1.50 7.00 37.16 0.26 -1.24 16 5 C 0.15 2.04 1.69 -67.93 -0.11 1.93 16 6 H 0.09 1.47 7.58 -51.93 -0.39 1.08 16 7 C 0.14 2.32 5.10 -4.04 -0.02 2.30 16 8 N -0.73 -16.06 5.43 -59.91 -0.33 -16.39 16 9 C -0.24 -6.19 9.99 -15.06 -0.15 -6.34 16 10 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 11 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 12 N -0.93 -26.21 13.06 55.49 0.72 -25.48 16 13 Si 0.91 21.04 29.55 -169.99 -5.02 16.02 16 14 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 N -0.69 -8.53 3.59 -54.80 -0.20 -8.72 16 18 C 0.57 7.16 6.12 -12.40 -0.08 7.08 16 19 O -0.53 -7.86 13.40 5.30 0.07 -7.79 16 20 C -0.14 -1.50 5.84 -105.34 -0.62 -2.11 16 21 C -0.03 -0.24 9.53 -39.18 -0.37 -0.61 16 22 C -0.09 -0.84 10.09 -39.47 -0.40 -1.24 16 23 C 0.25 3.12 8.02 -156.27 -1.25 1.86 16 24 N -0.33 -4.69 12.26 31.10 0.38 -4.31 16 25 N -0.01 -0.10 13.35 60.35 0.81 0.71 16 26 N -0.11 -1.55 13.99 60.35 0.84 -0.70 16 27 N -0.30 -3.85 3.92 -12.06 -0.05 -3.89 16 28 C 0.17 1.90 10.77 -16.51 -0.18 1.72 16 29 H 0.06 0.67 6.32 -51.93 -0.33 0.34 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.49 7.60 -51.93 -0.39 0.10 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.70 6.54 -51.93 -0.34 0.36 16 35 H 0.05 0.60 5.77 -51.93 -0.30 0.30 16 36 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.82 7.53 -51.92 -0.39 0.43 16 38 H 0.04 0.65 6.71 -51.93 -0.35 0.30 16 39 H 0.03 0.48 6.17 -51.93 -0.32 0.16 16 40 H 0.38 9.06 7.33 -40.82 -0.30 8.76 16 41 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 42 H 0.40 4.49 6.64 -40.82 -0.27 4.22 16 43 H 0.16 1.08 6.44 -52.49 -0.34 0.74 16 44 H 0.17 1.08 8.06 -52.48 -0.42 0.65 16 45 H 0.20 1.90 7.57 -52.48 -0.40 1.50 16 LS Contribution 365.22 15.07 5.50 5.50 Total: -1.00 -31.20 365.22 -5.56 -36.76 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -5.78 Total: 8.56 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: -2.51 Total: -0.26 kcal Atomic # 7 Polarization: -60.98 SS G_CDS: 2.19 Total: -58.79 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: 0.07 Total: -7.79 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.20 -5.56 -36.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332823307.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.399 kcal (2) G-P(sol) polarization free energy of solvation -31.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds