Wall clock time and date at job start Tue Mar 31 2020 18:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47159 * 2 1 4 4 C 1.53000 * 109.46777 * 240.00332 * 2 1 3 5 5 C 1.53001 * 109.47326 * 120.00027 * 2 1 3 6 6 H 1.09002 * 109.46840 * 179.97438 * 5 2 1 7 7 C 1.52996 * 109.47122 * 300.00027 * 5 2 1 8 8 N 1.46503 * 109.46974 * 174.99781 * 7 5 2 9 9 C 1.36936 * 120.00017 * 179.97438 * 8 7 5 10 10 H 1.08002 * 119.99984 * 0.02562 * 9 8 7 11 11 C 1.38815 * 120.00009 * 179.97438 * 9 8 7 12 12 N 1.31621 * 119.99798 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99786 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.46853 * 90.00490 * 13 11 9 15 15 H 1.48498 * 109.46918 * 210.00057 * 13 11 9 16 16 H 1.48499 * 109.47149 * 330.00419 * 13 11 9 17 17 N 1.46502 * 109.46697 * 60.00146 * 5 2 1 18 18 C 1.34779 * 120.00137 * 85.00277 * 17 5 2 19 19 O 1.21576 * 119.99756 * 359.97438 * 18 17 5 20 20 C 1.47688 * 119.99880 * 179.97438 * 18 17 5 21 21 C 1.41590 * 120.03737 * 0.02562 * 20 18 17 22 22 C 1.35785 * 119.55389 * 180.02562 * 21 20 18 23 23 C 1.40853 * 119.38779 * 359.97438 * 22 21 20 24 24 N 1.32489 * 133.41849 * 179.97438 * 23 22 21 25 25 N 1.28527 * 110.24660 * 180.02562 * 24 23 22 26 26 N 1.28984 * 110.84292 * 0.02562 * 25 24 23 27 27 N 1.36932 * 119.93600 * 359.97438 * 23 22 21 28 28 C 1.35496 * 120.83755 * 0.02562 * 27 23 22 29 29 H 1.08996 * 109.47114 * 299.99541 * 1 2 3 30 30 H 1.08998 * 109.47605 * 59.99865 * 1 2 3 31 31 H 1.09005 * 109.46831 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47583 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47413 * 300.00280 * 3 2 1 34 34 H 1.09005 * 109.46806 * 60.00009 * 3 2 1 35 35 H 1.09005 * 109.47122 * 299.99432 * 4 2 1 36 36 H 1.09001 * 109.47714 * 60.00130 * 4 2 1 37 37 H 1.09007 * 109.46859 * 179.97438 * 4 2 1 38 38 H 1.08997 * 109.47150 * 294.99622 * 7 5 2 39 39 H 1.09005 * 109.47059 * 54.99921 * 7 5 2 40 40 H 0.97003 * 119.99476 * 0.02562 * 8 7 5 41 41 H 0.97003 * 119.99466 * 179.97438 * 12 11 9 42 42 H 0.96998 * 119.99838 * 264.99629 * 17 5 2 43 43 H 1.08001 * 120.22289 * 359.97438 * 21 20 18 44 44 H 1.08003 * 120.30682 * 180.02562 * 22 21 20 45 45 H 1.08005 * 119.81774 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2492 6 1 3.1301 -0.7216 1.2489 7 6 1.5301 0.0000 2.4985 8 7 1.9177 -0.7567 3.6916 9 6 1.5691 -0.3006 4.9348 10 1 1.0081 0.6167 5.0357 11 6 1.9359 -1.0178 6.0653 12 7 2.6192 -2.1361 5.9422 13 14 1.4598 -0.3960 7.7611 14 1 0.1370 -0.9547 8.1398 15 1 2.4803 -0.8259 8.7505 16 1 1.3834 1.0869 7.7412 17 7 1.5517 -2.1025 1.2491 18 6 2.2286 -3.0565 0.5796 19 8 3.2441 -2.7708 -0.0246 20 6 1.7365 -4.4490 0.5800 21 6 0.5536 -4.7825 1.2830 22 6 0.1104 -6.0660 1.2773 23 6 0.8360 -7.0447 0.5704 24 7 0.6657 -8.3449 0.3811 25 7 1.6108 -8.8152 -0.3521 26 7 2.4407 -7.8850 -0.6834 27 7 1.9766 -6.6964 -0.1025 28 6 2.4218 -5.4167 -0.0989 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1393 37 1 3.1300 -0.7208 -1.2496 38 1 1.9647 0.9985 2.5444 39 1 0.4437 0.0782 2.4548 40 1 2.4219 -1.5804 3.6008 41 1 2.8758 -2.6370 6.7322 42 1 0.7413 -2.3304 1.7310 43 1 0.0079 -4.0214 1.8209 44 1 -0.7907 -6.3338 1.8090 45 1 3.3238 -5.1604 -0.6350 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332823307.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:03 Heat of formation + Delta-G solvation = 102.309944 kcal Electronic energy + Delta-G solvation = -28995.239389 eV Core-core repulsion = 25050.545038 eV Total energy + Delta-G solvation = -3944.694350 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -44.64352 -41.69402 -39.83824 -38.46296 -36.14593 -35.51516 -34.64539 -33.38656 -32.77838 -31.73806 -29.37580 -28.08140 -27.97363 -26.67904 -25.62582 -25.35849 -24.06778 -23.14134 -22.30371 -20.12788 -19.88655 -19.23494 -18.63806 -18.22045 -18.13930 -17.21421 -16.92890 -16.50010 -16.16657 -15.84857 -15.41566 -15.33592 -14.85808 -14.79106 -14.68544 -14.67587 -14.21549 -14.05392 -13.85670 -13.59898 -13.04314 -12.98220 -12.92393 -12.89301 -12.82464 -12.70393 -12.46918 -12.36011 -12.30490 -12.16926 -11.98608 -11.72181 -11.59895 -11.35648 -11.23736 -11.18914 -10.85709 -9.99844 -9.81177 -8.92534 -7.89698 -5.17181 -1.08304 -0.67753 0.38924 0.69028 1.49415 1.52203 1.54117 1.60975 2.00249 2.25203 2.45812 2.60340 2.90560 3.26432 3.40889 3.46550 3.64382 3.68462 3.77254 3.93547 4.00478 4.09614 4.30716 4.39639 4.40351 4.51395 4.59080 4.64307 4.69877 4.89104 4.90510 4.92117 4.97383 5.03129 5.06076 5.13255 5.15651 5.22308 5.30436 5.37081 5.45803 5.57543 5.60587 5.66268 6.31603 6.45505 7.04833 7.09100 7.40508 8.14480 8.37405 9.32785 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.009269 B = 0.003977 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3020.155163 B = 7038.803115 C = 9340.313192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.070 4.070 3 C -0.142 4.142 4 C -0.124 4.124 5 C 0.160 3.840 6 H 0.063 0.937 7 C 0.142 3.858 8 N -0.741 5.741 9 C -0.236 4.236 10 H 0.078 0.922 11 C -0.067 4.067 12 N -0.965 5.965 13 Si 0.963 3.037 14 H -0.286 1.286 15 H -0.305 1.305 16 H -0.272 1.272 17 N -0.688 5.688 18 C 0.572 3.428 19 O -0.554 6.554 20 C -0.135 4.135 21 C -0.016 4.016 22 C -0.082 4.082 23 C 0.242 3.758 24 N -0.344 5.344 25 N -0.024 5.024 26 N -0.127 5.127 27 N -0.306 5.306 28 C 0.168 3.832 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.047 0.953 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.046 0.954 36 H 0.059 0.941 37 H 0.043 0.957 38 H 0.037 0.963 39 H 0.051 0.949 40 H 0.375 0.625 41 H 0.248 0.752 42 H 0.412 0.588 43 H 0.192 0.808 44 H 0.207 0.793 45 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.015 1.362 -14.113 16.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.071 4.071 3 C -0.199 4.199 4 C -0.182 4.182 5 C 0.055 3.945 6 H 0.081 0.919 7 C 0.016 3.984 8 N -0.384 5.384 9 C -0.368 4.368 10 H 0.096 0.904 11 C -0.260 4.260 12 N -0.616 5.616 13 Si 0.793 3.207 14 H -0.213 1.213 15 H -0.232 1.232 16 H -0.197 1.197 17 N -0.339 5.339 18 C 0.358 3.642 19 O -0.434 6.434 20 C -0.144 4.144 21 C -0.043 4.043 22 C -0.104 4.104 23 C -0.010 4.010 24 N -0.204 5.204 25 N -0.017 5.017 26 N -0.111 5.111 27 N -0.084 5.084 28 C 0.037 3.963 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.062 0.938 38 H 0.054 0.946 39 H 0.068 0.932 40 H 0.207 0.793 41 H 0.057 0.943 42 H 0.250 0.750 43 H 0.209 0.791 44 H 0.224 0.776 45 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -7.001 0.190 -15.026 16.577 hybrid contribution 0.230 0.407 1.574 1.642 sum -6.770 0.597 -13.451 15.071 Atomic orbital electron populations 1.21910 0.92913 1.02366 1.02529 1.20855 0.97124 0.95620 0.93522 1.21899 1.00773 0.94530 1.02727 1.21822 1.00451 0.99478 0.96432 1.21178 0.98504 0.79974 0.94878 0.91863 1.21259 0.98485 0.94351 0.84300 1.42515 1.66846 1.27801 1.01276 1.19569 1.27393 1.05136 0.84726 0.90393 1.25382 1.01766 0.97946 1.00907 1.69794 1.45172 1.17897 1.28738 0.85302 0.76831 0.77948 0.80619 1.21260 1.23226 1.19745 1.45691 1.28939 1.08144 1.51110 1.17523 0.83467 0.83911 0.79321 1.90829 1.25328 1.82346 1.44854 1.19703 0.98358 0.94038 1.02258 1.21830 0.92323 0.97352 0.92745 1.20765 1.02004 0.88560 0.99097 1.23603 0.88187 0.93601 0.95641 1.75082 1.20408 1.05483 1.19476 1.77825 0.97306 1.21604 1.04931 1.82784 1.20635 0.84967 1.22676 1.48755 1.18352 1.09212 1.32045 1.21846 0.99820 0.77695 0.96904 0.91940 0.91572 0.92163 0.93396 0.90962 0.92028 0.93527 0.92165 0.93814 0.94559 0.93178 0.79284 0.94334 0.74965 0.79106 0.77568 0.78174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 7.97 71.98 0.57 -1.73 16 2 C -0.07 -1.42 0.62 -52.18 -0.03 -1.45 16 3 C -0.14 -2.75 8.12 71.98 0.58 -2.16 16 4 C -0.12 -2.64 7.00 71.98 0.50 -2.13 16 5 C 0.16 4.17 1.69 44.99 0.08 4.25 16 6 H 0.06 2.05 7.58 -2.39 -0.02 2.03 16 7 C 0.14 4.44 5.10 86.38 0.44 4.88 16 8 N -0.74 -31.65 5.43 -343.45 -1.87 -33.52 16 9 C -0.24 -11.60 9.99 84.03 0.84 -10.76 16 10 H 0.08 3.66 7.83 -2.91 -0.02 3.64 16 11 C -0.07 -3.52 5.50 84.86 0.47 -3.05 16 12 N -0.97 -54.48 13.06 21.65 0.28 -54.19 16 13 Si 0.96 42.76 29.55 68.60 2.03 44.78 16 14 H -0.29 -12.37 7.11 99.48 0.71 -11.67 16 15 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 16 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 17 N -0.69 -15.76 3.59 -445.55 -1.60 -17.36 16 18 C 0.57 13.73 6.12 86.74 0.53 14.26 16 19 O -0.55 -16.39 13.40 -3.95 -0.05 -16.45 16 20 C -0.13 -2.63 5.84 -20.33 -0.12 -2.75 16 21 C -0.02 -0.24 9.53 22.53 0.21 -0.02 16 22 C -0.08 -1.25 10.09 22.34 0.23 -1.02 16 23 C 0.24 5.73 8.02 134.15 1.08 6.80 16 24 N -0.34 -9.83 12.26 -55.52 -0.68 -10.51 16 25 N -0.02 -0.73 13.35 37.02 0.49 -0.23 16 26 N -0.13 -3.74 13.99 37.02 0.52 -3.22 16 27 N -0.31 -7.64 3.92 -192.06 -0.75 -8.39 16 28 C 0.17 3.57 10.77 83.75 0.90 4.47 16 29 H 0.06 1.07 6.32 -2.39 -0.02 1.05 16 30 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.06 0.90 7.60 -2.38 -0.02 0.89 16 32 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.06 1.22 6.54 -2.38 -0.02 1.21 16 35 H 0.05 1.02 5.77 -2.38 -0.01 1.00 16 36 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.04 1.10 7.53 -2.38 -0.02 1.08 16 38 H 0.04 1.18 6.71 -2.39 -0.02 1.17 16 39 H 0.05 1.42 6.17 -2.38 -0.01 1.41 16 40 H 0.37 17.47 7.33 -92.71 -0.68 16.79 16 41 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 42 H 0.41 8.06 6.64 -92.71 -0.62 7.44 16 43 H 0.19 1.76 6.44 -2.91 -0.02 1.74 16 44 H 0.21 1.77 8.06 -2.91 -0.02 1.74 16 45 H 0.20 3.94 7.57 -2.91 -0.02 3.92 16 Total: -1.00 -67.54 365.22 4.41 -63.13 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: -0.24 Total: 26.40 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: 6.28 Total: 9.57 kcal Atomic # 7 Polarization: -123.83 SS G_CDS: -3.61 Total: -127.44 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.05 Total: -16.45 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -67.54 4.41 -63.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332823307.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.442 kcal (2) G-P(sol) polarization free energy of solvation -67.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds