Wall clock time and date at job start Tue Mar 31 2020 18:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47433 * 2 1 4 4 C 1.52997 * 109.46797 * 240.00150 * 2 1 3 5 5 C 1.53001 * 109.47430 * 120.00053 * 2 1 3 6 6 H 1.08997 * 109.47007 * 300.00412 * 5 2 1 7 7 C 1.52995 * 109.47235 * 179.97438 * 5 2 1 8 8 N 1.46505 * 109.46972 * 185.00133 * 7 5 2 9 9 C 1.36939 * 119.99473 * 180.02562 * 8 7 5 10 10 H 1.07995 * 120.00470 * 359.97438 * 9 8 7 11 11 C 1.38815 * 119.99712 * 180.02562 * 9 8 7 12 12 N 1.31625 * 119.99795 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00185 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.47411 * 59.99356 * 13 11 9 15 15 H 1.48493 * 109.47298 * 179.97438 * 13 11 9 16 16 H 1.48507 * 109.46886 * 299.99771 * 13 11 9 17 17 N 1.46502 * 109.46731 * 59.99683 * 5 2 1 18 18 C 1.34778 * 120.00125 * 275.00035 * 17 5 2 19 19 O 1.21576 * 119.99750 * 0.02562 * 18 17 5 20 20 C 1.47692 * 120.00226 * 180.02562 * 18 17 5 21 21 C 1.41596 * 120.03060 * 359.97438 * 20 18 17 22 22 C 1.35785 * 119.55019 * 179.97438 * 21 20 18 23 23 C 1.40854 * 119.38796 * 0.02562 * 22 21 20 24 24 N 1.32489 * 133.41832 * 179.97438 * 23 22 21 25 25 N 1.28527 * 110.24660 * 180.02562 * 24 23 22 26 26 N 1.28984 * 110.84292 * 0.02562 * 25 24 23 27 27 N 1.36932 * 119.93616 * 359.97438 * 23 22 21 28 28 C 1.35496 * 120.83722 * 0.02562 * 27 23 22 29 29 H 1.09009 * 109.46966 * 299.99856 * 1 2 3 30 30 H 1.08999 * 109.47601 * 59.99633 * 1 2 3 31 31 H 1.08996 * 109.47401 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47111 * 180.02562 * 3 2 1 33 33 H 1.09008 * 109.46852 * 300.00664 * 3 2 1 34 34 H 1.09003 * 109.47028 * 59.99667 * 3 2 1 35 35 H 1.09005 * 109.47178 * 300.00187 * 4 2 1 36 36 H 1.08996 * 109.47577 * 59.99948 * 4 2 1 37 37 H 1.09006 * 109.47325 * 179.97438 * 4 2 1 38 38 H 1.08998 * 109.47239 * 305.00570 * 7 5 2 39 39 H 1.09005 * 109.47166 * 65.00253 * 7 5 2 40 40 H 0.96989 * 119.99863 * 0.02562 * 8 7 5 41 41 H 0.96999 * 119.99874 * 180.02562 * 12 11 9 42 42 H 0.96998 * 119.99856 * 95.00212 * 17 5 2 43 43 H 1.08001 * 120.22638 * 359.96450 * 21 20 18 44 44 H 1.08003 * 120.30651 * 180.02562 * 22 21 20 45 45 H 1.08005 * 119.81738 * 180.02562 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2492 6 1 1.6767 -0.2075 2.1392 7 6 3.5700 -0.7218 1.2488 8 7 4.0583 -1.5141 2.3803 9 6 5.4047 -1.6576 2.5852 10 1 6.1065 -1.1871 1.9126 11 6 5.8674 -2.4087 3.6569 12 7 5.0120 -2.9826 4.4764 13 14 7.7039 -2.6039 3.9370 14 1 8.3180 -1.2677 4.1436 15 1 7.9347 -3.4454 5.1385 16 1 8.3190 -3.2534 2.7515 17 7 1.5516 -2.1025 1.2492 18 6 0.3297 -2.3852 1.7425 19 8 -0.3675 -1.4939 2.1871 20 6 -0.1625 -3.7777 1.7430 21 6 0.6487 -4.8162 1.2248 22 6 0.1867 -6.0930 1.2306 23 6 -1.0937 -6.3624 1.7522 24 7 -1.8047 -7.4715 1.8930 25 7 -2.9403 -7.2061 2.4334 26 7 -3.0493 -5.9441 2.6762 27 7 -1.8587 -5.3405 2.2475 28 6 -1.4009 -4.0652 2.2434 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4424 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6765 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1392 37 1 3.1299 -0.7209 -1.2496 38 1 3.9330 -1.1562 0.3174 39 1 3.9337 0.3019 1.3382 40 1 3.4280 -1.9369 2.9841 41 1 5.3354 -3.5071 5.2255 42 1 2.1077 -2.8135 0.8941 43 1 1.6281 -4.5942 0.8276 44 1 0.7953 -6.8946 0.8388 45 1 -2.0181 -3.2718 2.6386 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332823310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:12 Heat of formation + Delta-G solvation = 122.745075 kcal Electronic energy + Delta-G solvation = -28994.501174 eV Core-core repulsion = 25050.692958 eV Total energy + Delta-G solvation = -3943.808216 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -43.65868 -40.66080 -38.86799 -37.39896 -34.68722 -34.45722 -33.51414 -32.30643 -31.13700 -30.80688 -27.98228 -27.26415 -27.04466 -25.55085 -24.66881 -23.81733 -23.08264 -21.78006 -21.26295 -19.13091 -18.86316 -17.76784 -17.73042 -17.14249 -16.91827 -16.14232 -15.74664 -15.34946 -15.08380 -14.65738 -14.15169 -14.04565 -13.86414 -13.82346 -13.66846 -13.24741 -13.13837 -12.81754 -12.79270 -12.33182 -12.13029 -12.07633 -11.93466 -11.91573 -11.51545 -11.35581 -11.32622 -11.24786 -10.89135 -10.87458 -10.69558 -10.40327 -10.36201 -10.11463 -10.07802 -9.85715 -9.02349 -8.98415 -8.83448 -7.07924 -5.89479 -3.19789 -0.15074 0.16247 1.33005 1.71344 2.43158 3.00740 3.19017 3.35186 3.35918 3.40759 3.41875 3.81263 4.09316 4.28256 4.45699 4.51522 4.65318 4.79506 4.90993 4.98126 5.03143 5.26049 5.33682 5.41137 5.42577 5.43176 5.55493 5.64507 5.66084 5.75720 5.78536 5.89161 5.93966 5.95842 5.99863 6.03223 6.16580 6.27365 6.32706 6.33738 6.47403 6.56994 6.73231 7.46729 7.57307 8.08031 8.09849 8.28209 9.40419 9.94501 10.29496 11.32446 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.009269 B = 0.003977 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3020.018849 B = 7038.635290 C = 9340.093073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.076 4.076 3 C -0.141 4.141 4 C -0.143 4.143 5 C 0.149 3.851 6 H 0.092 0.908 7 C 0.141 3.859 8 N -0.732 5.732 9 C -0.246 4.246 10 H 0.070 0.930 11 C -0.008 4.008 12 N -0.931 5.931 13 Si 0.906 3.094 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.285 1.285 17 N -0.693 5.693 18 C 0.571 3.429 19 O -0.529 6.529 20 C -0.142 4.142 21 C -0.027 4.027 22 C -0.094 4.094 23 C 0.252 3.748 24 N -0.325 5.325 25 N -0.006 5.006 26 N -0.107 5.107 27 N -0.304 5.304 28 C 0.174 3.826 29 H 0.063 0.937 30 H 0.043 0.957 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.050 0.950 37 H 0.064 0.936 38 H 0.031 0.969 39 H 0.038 0.962 40 H 0.385 0.615 41 H 0.257 0.743 42 H 0.404 0.596 43 H 0.165 0.835 44 H 0.174 0.826 45 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.519 1.039 -11.691 15.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.078 4.078 3 C -0.199 4.199 4 C -0.200 4.200 5 C 0.045 3.955 6 H 0.110 0.890 7 C 0.013 3.987 8 N -0.377 5.377 9 C -0.377 4.377 10 H 0.088 0.912 11 C -0.205 4.205 12 N -0.578 5.578 13 Si 0.737 3.263 14 H -0.212 1.212 15 H -0.217 1.217 16 H -0.212 1.212 17 N -0.343 5.343 18 C 0.355 3.645 19 O -0.406 6.406 20 C -0.151 4.151 21 C -0.054 4.054 22 C -0.117 4.117 23 C -0.002 4.002 24 N -0.185 5.185 25 N 0.001 4.999 26 N -0.090 5.090 27 N -0.083 5.083 28 C 0.044 3.956 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.048 0.952 39 H 0.056 0.944 40 H 0.219 0.781 41 H 0.066 0.934 42 H 0.241 0.759 43 H 0.182 0.818 44 H 0.192 0.808 45 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -11.165 0.768 -10.923 15.638 hybrid contribution 1.785 -0.021 0.208 1.798 sum -9.380 0.747 -10.715 14.260 Atomic orbital electron populations 1.21906 0.94029 1.01644 1.01281 1.20906 0.96081 0.95719 0.95081 1.21892 1.01659 0.94702 1.01666 1.21930 1.01648 0.99919 0.96509 1.21408 0.95333 0.80593 0.98179 0.89035 1.21120 0.88861 0.96325 0.92414 1.42346 1.04911 1.60346 1.30069 1.19142 0.83234 1.26396 1.08903 0.91170 1.24731 0.97597 1.00365 0.97795 1.69643 1.32765 1.37795 1.17640 0.86290 0.85127 0.77600 0.77254 1.21236 1.21691 1.21206 1.45793 1.16116 1.11094 1.61335 1.17352 0.82408 0.86085 0.78631 1.90829 1.56481 1.46793 1.46540 1.19828 0.94147 0.96480 1.04651 1.21558 0.99823 0.90875 0.93102 1.20335 0.90901 0.98761 1.01683 1.23126 0.95682 0.84709 0.96654 1.75178 1.00264 1.20887 1.22137 1.77866 1.10681 1.06294 1.05104 1.82860 0.99508 1.02062 1.24602 1.48787 1.13457 1.08520 1.37495 1.21711 0.95176 0.83831 0.94911 0.91834 0.93771 0.93111 0.91790 0.92776 0.92456 0.92940 0.93041 0.91744 0.95186 0.94420 0.78116 0.93362 0.75918 0.81785 0.80844 0.78713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.50 7.00 37.16 0.26 -1.24 16 2 C -0.08 -0.86 0.62 -154.51 -0.10 -0.95 16 3 C -0.14 -1.51 8.12 37.16 0.30 -1.21 16 4 C -0.14 -1.42 7.97 37.16 0.30 -1.12 16 5 C 0.15 2.04 1.69 -67.93 -0.11 1.93 16 6 H 0.09 1.48 7.58 -51.93 -0.39 1.08 16 7 C 0.14 2.32 5.10 -4.04 -0.02 2.30 16 8 N -0.73 -16.07 5.43 -59.91 -0.33 -16.39 16 9 C -0.25 -6.21 9.99 -15.06 -0.15 -6.37 16 10 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 11 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 12 N -0.93 -26.21 13.06 55.49 0.72 -25.49 16 13 Si 0.91 21.04 29.55 -169.99 -5.02 16.02 16 14 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 17 N -0.69 -8.53 3.59 -54.80 -0.20 -8.73 16 18 C 0.57 7.16 6.12 -12.40 -0.08 7.08 16 19 O -0.53 -7.87 13.40 5.30 0.07 -7.79 16 20 C -0.14 -1.50 5.84 -105.34 -0.62 -2.11 16 21 C -0.03 -0.24 9.53 -39.18 -0.37 -0.61 16 22 C -0.09 -0.84 10.09 -39.47 -0.40 -1.24 16 23 C 0.25 3.12 8.02 -156.27 -1.25 1.86 16 24 N -0.33 -4.69 12.26 31.10 0.38 -4.31 16 25 N -0.01 -0.10 13.35 60.35 0.81 0.71 16 26 N -0.11 -1.55 13.99 60.35 0.84 -0.70 16 27 N -0.30 -3.85 3.92 -12.06 -0.05 -3.90 16 28 C 0.17 1.90 10.77 -16.51 -0.18 1.72 16 29 H 0.06 0.82 7.53 -51.92 -0.39 0.43 16 30 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.60 5.77 -51.93 -0.30 0.30 16 32 H 0.06 0.70 6.55 -51.93 -0.34 0.36 16 33 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.05 0.49 7.60 -51.93 -0.39 0.10 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.67 6.32 -51.93 -0.33 0.34 16 38 H 0.03 0.48 6.17 -51.93 -0.32 0.16 16 39 H 0.04 0.65 6.71 -51.93 -0.35 0.30 16 40 H 0.38 9.06 7.33 -40.82 -0.30 8.76 16 41 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.40 4.49 6.64 -40.82 -0.27 4.22 16 43 H 0.16 1.08 6.44 -52.49 -0.34 0.74 16 44 H 0.17 1.08 8.06 -52.48 -0.42 0.65 16 45 H 0.20 1.90 7.57 -52.48 -0.40 1.50 16 LS Contribution 365.22 15.07 5.50 5.50 Total: -1.00 -31.18 365.22 -5.56 -36.74 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -5.78 Total: 8.62 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -2.51 Total: -0.28 kcal Atomic # 7 Polarization: -61.00 SS G_CDS: 2.19 Total: -58.81 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: 0.07 Total: -7.79 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.18 -5.56 -36.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332823310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.487 kcal (2) G-P(sol) polarization free energy of solvation -31.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds