Wall clock time and date at job start Tue Mar 31 2020 18:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47433 * 2 1 4 4 C 1.52997 * 109.46797 * 240.00150 * 2 1 3 5 5 C 1.53001 * 109.47430 * 120.00053 * 2 1 3 6 6 H 1.08997 * 109.47007 * 300.00412 * 5 2 1 7 7 C 1.52995 * 109.47235 * 179.97438 * 5 2 1 8 8 N 1.46505 * 109.46972 * 185.00133 * 7 5 2 9 9 C 1.36939 * 119.99473 * 180.02562 * 8 7 5 10 10 H 1.07995 * 120.00470 * 359.97438 * 9 8 7 11 11 C 1.38815 * 119.99712 * 180.02562 * 9 8 7 12 12 N 1.31625 * 119.99795 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00185 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.47411 * 59.99356 * 13 11 9 15 15 H 1.48493 * 109.47298 * 179.97438 * 13 11 9 16 16 H 1.48507 * 109.46886 * 299.99771 * 13 11 9 17 17 N 1.46502 * 109.46731 * 59.99683 * 5 2 1 18 18 C 1.34778 * 120.00125 * 275.00035 * 17 5 2 19 19 O 1.21576 * 119.99750 * 0.02562 * 18 17 5 20 20 C 1.47692 * 120.00226 * 180.02562 * 18 17 5 21 21 C 1.41596 * 120.03060 * 359.97438 * 20 18 17 22 22 C 1.35785 * 119.55019 * 179.97438 * 21 20 18 23 23 C 1.40854 * 119.38796 * 0.02562 * 22 21 20 24 24 N 1.32489 * 133.41832 * 179.97438 * 23 22 21 25 25 N 1.28527 * 110.24660 * 180.02562 * 24 23 22 26 26 N 1.28984 * 110.84292 * 0.02562 * 25 24 23 27 27 N 1.36932 * 119.93616 * 359.97438 * 23 22 21 28 28 C 1.35496 * 120.83722 * 0.02562 * 27 23 22 29 29 H 1.09009 * 109.46966 * 299.99856 * 1 2 3 30 30 H 1.08999 * 109.47601 * 59.99633 * 1 2 3 31 31 H 1.08996 * 109.47401 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47111 * 180.02562 * 3 2 1 33 33 H 1.09008 * 109.46852 * 300.00664 * 3 2 1 34 34 H 1.09003 * 109.47028 * 59.99667 * 3 2 1 35 35 H 1.09005 * 109.47178 * 300.00187 * 4 2 1 36 36 H 1.08996 * 109.47577 * 59.99948 * 4 2 1 37 37 H 1.09006 * 109.47325 * 179.97438 * 4 2 1 38 38 H 1.08998 * 109.47239 * 305.00570 * 7 5 2 39 39 H 1.09005 * 109.47166 * 65.00253 * 7 5 2 40 40 H 0.96989 * 119.99863 * 0.02562 * 8 7 5 41 41 H 0.96999 * 119.99874 * 180.02562 * 12 11 9 42 42 H 0.96998 * 119.99856 * 95.00212 * 17 5 2 43 43 H 1.08001 * 120.22638 * 359.96450 * 21 20 18 44 44 H 1.08003 * 120.30651 * 180.02562 * 22 21 20 45 45 H 1.08005 * 119.81738 * 180.02562 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2492 6 1 1.6767 -0.2075 2.1392 7 6 3.5700 -0.7218 1.2488 8 7 4.0583 -1.5141 2.3803 9 6 5.4047 -1.6576 2.5852 10 1 6.1065 -1.1871 1.9126 11 6 5.8674 -2.4087 3.6569 12 7 5.0120 -2.9826 4.4764 13 14 7.7039 -2.6039 3.9370 14 1 8.3180 -1.2677 4.1436 15 1 7.9347 -3.4454 5.1385 16 1 8.3190 -3.2534 2.7515 17 7 1.5516 -2.1025 1.2492 18 6 0.3297 -2.3852 1.7425 19 8 -0.3675 -1.4939 2.1871 20 6 -0.1625 -3.7777 1.7430 21 6 0.6487 -4.8162 1.2248 22 6 0.1867 -6.0930 1.2306 23 6 -1.0937 -6.3624 1.7522 24 7 -1.8047 -7.4715 1.8930 25 7 -2.9403 -7.2061 2.4334 26 7 -3.0493 -5.9441 2.6762 27 7 -1.8587 -5.3405 2.2475 28 6 -1.4009 -4.0652 2.2434 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4424 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6765 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1392 37 1 3.1299 -0.7209 -1.2496 38 1 3.9330 -1.1562 0.3174 39 1 3.9337 0.3019 1.3382 40 1 3.4280 -1.9369 2.9841 41 1 5.3354 -3.5071 5.2255 42 1 2.1077 -2.8135 0.8941 43 1 1.6281 -4.5942 0.8276 44 1 0.7953 -6.8946 0.8388 45 1 -2.0181 -3.2718 2.6386 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332823310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:11 Heat of formation + Delta-G solvation = 102.431924 kcal Electronic energy + Delta-G solvation = -28995.382019 eV Core-core repulsion = 25050.692958 eV Total energy + Delta-G solvation = -3944.689061 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -44.64328 -41.69404 -39.83825 -38.46277 -36.14413 -35.51466 -34.64506 -33.38605 -32.77731 -31.73800 -29.37492 -28.08113 -27.97405 -26.67800 -25.62501 -25.35689 -24.06745 -23.14029 -22.30347 -20.12758 -19.88630 -19.23366 -18.63777 -18.21940 -18.13929 -17.21414 -16.92719 -16.50097 -16.16635 -15.84853 -15.41830 -15.33090 -14.85760 -14.78911 -14.68486 -14.67544 -14.21671 -14.05428 -13.85605 -13.59671 -13.04122 -12.98545 -12.92371 -12.88088 -12.82403 -12.67281 -12.47358 -12.35989 -12.32031 -12.19270 -11.99367 -11.72073 -11.59889 -11.35594 -11.23661 -11.18819 -10.84807 -9.99826 -9.81171 -8.92438 -7.89374 -5.16982 -1.08257 -0.67700 0.38938 0.69055 1.49448 1.53102 1.54482 1.60042 2.00267 2.25225 2.45839 2.60596 2.90605 3.26459 3.40927 3.46593 3.64412 3.68513 3.77279 3.93567 4.00505 4.09606 4.30834 4.39684 4.40385 4.51402 4.59115 4.64351 4.69908 4.89123 4.90486 4.92126 4.97378 5.03101 5.06095 5.13247 5.15656 5.22335 5.30436 5.37042 5.45802 5.57436 5.60550 5.66248 6.31732 6.45535 7.04858 7.09116 7.40650 8.14691 8.37657 9.32883 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.009269 B = 0.003977 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3020.018849 B = 7038.635290 C = 9340.093073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.070 4.070 3 C -0.142 4.142 4 C -0.140 4.140 5 C 0.160 3.840 6 H 0.063 0.937 7 C 0.142 3.858 8 N -0.741 5.741 9 C -0.238 4.238 10 H 0.078 0.922 11 C -0.067 4.067 12 N -0.965 5.965 13 Si 0.963 3.037 14 H -0.284 1.284 15 H -0.303 1.303 16 H -0.275 1.275 17 N -0.688 5.688 18 C 0.572 3.428 19 O -0.554 6.554 20 C -0.135 4.135 21 C -0.016 4.016 22 C -0.082 4.082 23 C 0.242 3.758 24 N -0.344 5.344 25 N -0.024 5.024 26 N -0.127 5.127 27 N -0.306 5.306 28 C 0.168 3.832 29 H 0.043 0.957 30 H 0.059 0.941 31 H 0.046 0.954 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.047 0.953 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.050 0.950 39 H 0.037 0.963 40 H 0.375 0.625 41 H 0.248 0.752 42 H 0.412 0.588 43 H 0.192 0.808 44 H 0.207 0.793 45 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.198 1.371 -13.973 16.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.071 4.071 3 C -0.199 4.199 4 C -0.197 4.197 5 C 0.055 3.945 6 H 0.081 0.919 7 C 0.016 3.984 8 N -0.384 5.384 9 C -0.370 4.370 10 H 0.096 0.904 11 C -0.260 4.260 12 N -0.616 5.616 13 Si 0.793 3.207 14 H -0.211 1.211 15 H -0.230 1.230 16 H -0.200 1.200 17 N -0.339 5.339 18 C 0.358 3.642 19 O -0.434 6.434 20 C -0.144 4.144 21 C -0.043 4.043 22 C -0.104 4.104 23 C -0.010 4.010 24 N -0.204 5.204 25 N -0.017 5.017 26 N -0.111 5.111 27 N -0.084 5.084 28 C 0.037 3.963 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.054 0.946 40 H 0.207 0.793 41 H 0.057 0.943 42 H 0.250 0.750 43 H 0.209 0.791 44 H 0.224 0.776 45 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -9.835 1.124 -13.259 16.547 hybrid contribution 1.405 0.018 0.855 1.645 sum -8.430 1.142 -12.404 15.041 Atomic orbital electron populations 1.21820 0.93996 1.01302 1.01065 1.20854 0.95923 0.95912 0.94432 1.21900 1.01467 0.94411 1.02150 1.21909 1.01445 1.00356 0.96009 1.21177 0.93428 0.81403 0.98523 0.91865 1.21259 0.90626 0.95368 0.91140 1.42503 1.03794 1.60808 1.31323 1.19537 0.84837 1.24548 1.08070 0.90402 1.25384 1.00892 1.01349 0.98334 1.69786 1.34113 1.39377 1.18314 0.85372 0.81305 0.77192 0.76813 1.21102 1.22983 1.20045 1.45691 1.16139 1.10839 1.61213 1.17525 0.82157 0.86559 0.77985 1.90829 1.57177 1.47801 1.47554 1.19703 0.94130 0.95906 1.04617 1.21832 1.00360 0.90048 0.92011 1.20766 0.89528 0.99742 1.00389 1.23604 0.96553 0.84129 0.96747 1.75082 1.00442 1.22076 1.22848 1.77825 1.11347 1.06710 1.05785 1.82784 1.00627 1.02005 1.25646 1.48754 1.13151 1.08990 1.37470 1.21842 0.95637 0.83477 0.95310 0.93816 0.92158 0.93527 0.92030 0.90961 0.93396 0.92159 0.91579 0.91940 0.93191 0.94569 0.79285 0.94318 0.74963 0.79101 0.77564 0.78178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.64 7.00 71.98 0.50 -2.14 16 2 C -0.07 -1.42 0.62 -52.18 -0.03 -1.45 16 3 C -0.14 -2.75 8.12 71.98 0.58 -2.17 16 4 C -0.14 -2.31 7.97 71.98 0.57 -1.73 16 5 C 0.16 4.18 1.69 44.99 0.08 4.25 16 6 H 0.06 2.05 7.58 -2.39 -0.02 2.03 16 7 C 0.14 4.45 5.10 86.38 0.44 4.89 16 8 N -0.74 -31.68 5.43 -343.45 -1.87 -33.55 16 9 C -0.24 -11.70 9.99 84.03 0.84 -10.86 16 10 H 0.08 3.65 7.83 -2.91 -0.02 3.63 16 11 C -0.07 -3.50 5.50 84.86 0.47 -3.03 16 12 N -0.97 -54.48 13.06 21.65 0.28 -54.19 16 13 Si 0.96 42.73 29.55 68.60 2.03 44.76 16 14 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 15 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 16 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 17 N -0.69 -15.78 3.59 -445.55 -1.60 -17.38 16 18 C 0.57 13.73 6.12 86.74 0.53 14.26 16 19 O -0.55 -16.40 13.40 -3.95 -0.05 -16.46 16 20 C -0.13 -2.63 5.84 -20.33 -0.12 -2.75 16 21 C -0.02 -0.24 9.53 22.53 0.21 -0.02 16 22 C -0.08 -1.25 10.09 22.34 0.23 -1.02 16 23 C 0.24 5.72 8.02 134.15 1.08 6.80 16 24 N -0.34 -9.83 12.26 -55.52 -0.68 -10.51 16 25 N -0.02 -0.73 13.35 37.02 0.49 -0.23 16 26 N -0.13 -3.74 13.99 37.02 0.52 -3.22 16 27 N -0.31 -7.64 3.92 -192.06 -0.75 -8.39 16 28 C 0.17 3.57 10.77 83.75 0.90 4.47 16 29 H 0.04 1.10 7.53 -2.38 -0.02 1.08 16 30 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.05 1.02 5.77 -2.39 -0.01 1.01 16 32 H 0.06 1.22 6.55 -2.39 -0.02 1.21 16 33 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 34 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.06 0.91 7.60 -2.38 -0.02 0.89 16 36 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.06 1.07 6.32 -2.38 -0.02 1.05 16 38 H 0.05 1.42 6.17 -2.39 -0.01 1.40 16 39 H 0.04 1.18 6.71 -2.38 -0.02 1.16 16 40 H 0.37 17.48 7.33 -92.72 -0.68 16.80 16 41 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 42 H 0.41 8.07 6.64 -92.71 -0.62 7.45 16 43 H 0.19 1.76 6.44 -2.91 -0.02 1.74 16 44 H 0.21 1.76 8.06 -2.91 -0.02 1.74 16 45 H 0.20 3.94 7.57 -2.91 -0.02 3.92 16 Total: -1.00 -67.52 365.22 4.41 -63.10 By element: Atomic # 1 Polarization: 26.80 SS G_CDS: -0.24 Total: 26.56 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: 6.28 Total: 9.50 kcal Atomic # 7 Polarization: -123.87 SS G_CDS: -3.61 Total: -127.48 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -0.05 Total: -16.46 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -67.52 4.41 -63.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332823310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.536 kcal (2) G-P(sol) polarization free energy of solvation -67.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds