Wall clock time and date at job start Tue Mar 31 2020 17:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31424 * 119.85203 * 2 1 4 4 C 1.33795 * 120.86265 * 179.75205 * 3 2 1 5 5 N 1.32904 * 132.36398 * 180.17763 * 4 3 2 6 6 C 1.33069 * 109.71417 * 180.28452 * 5 4 3 7 7 N 1.39231 * 125.28298 * 180.02562 * 6 5 4 8 8 N 1.31758 * 109.44113 * 0.02562 * 6 5 4 9 9 N 1.36635 * 120.28737 * 0.49131 * 4 3 2 10 10 C 1.35850 * 120.28654 * 359.75743 * 9 4 3 11 11 C 1.50693 * 120.48129 * 179.97438 * 10 9 4 12 12 C 1.35872 * 119.04254 * 359.97438 * 10 9 4 13 13 C 1.50698 * 120.38804 * 180.02562 * 12 10 9 14 14 C 1.50704 * 109.46739 * 90.00586 * 13 12 10 15 15 O 1.21280 * 119.99784 * 359.97438 * 14 13 12 16 16 N 1.34780 * 119.99844 * 180.02562 * 14 13 12 17 17 C 1.46498 * 119.99758 * 179.97438 * 16 14 13 18 18 C 1.52999 * 109.46928 * 179.97438 * 17 16 14 19 19 C 1.53001 * 109.47347 * 179.97438 * 18 17 16 20 20 C 1.50698 * 109.47452 * 180.02562 * 19 18 17 21 21 H 1.08002 * 119.99451 * 0.02562 * 20 19 18 22 22 C 1.37876 * 120.00147 * 180.02562 * 20 19 18 23 23 N 1.31515 * 119.99530 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99919 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47317 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.46941 * 119.99796 * 24 22 20 27 27 H 1.48500 * 109.46754 * 239.99675 * 24 22 20 28 28 H 1.09000 * 109.47105 * 269.76138 * 1 2 3 29 29 H 1.09001 * 109.46799 * 29.75749 * 1 2 3 30 30 H 1.08997 * 109.46684 * 149.75917 * 1 2 3 31 31 H 0.97000 * 119.99784 * 359.97263 * 7 6 5 32 32 H 0.96998 * 120.00384 * 179.97438 * 7 6 5 33 33 H 1.09005 * 109.47555 * 90.00044 * 11 10 9 34 34 H 1.09006 * 109.47443 * 209.99966 * 11 10 9 35 35 H 1.09000 * 109.47425 * 329.99652 * 11 10 9 36 36 H 1.08994 * 109.47098 * 210.00132 * 13 12 10 37 37 H 1.09004 * 109.47263 * 330.00778 * 13 12 10 38 38 H 0.96993 * 119.99639 * 359.97438 * 16 14 13 39 39 H 1.09004 * 109.47315 * 300.00040 * 17 16 14 40 40 H 1.09004 * 109.46973 * 59.99989 * 17 16 14 41 41 H 1.09004 * 109.47386 * 300.00279 * 18 17 16 42 42 H 1.09004 * 109.47071 * 60.00332 * 18 17 16 43 43 H 1.09004 * 109.47149 * 300.00477 * 19 18 17 44 44 H 1.09004 * 109.46721 * 60.00170 * 19 18 17 45 45 H 0.97006 * 119.99322 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1612 1.1399 0.0000 4 6 3.4990 1.1635 0.0050 5 7 4.3770 2.1611 0.0092 6 6 5.6140 1.6704 0.0071 7 7 6.7806 2.4303 0.0107 8 7 5.5634 0.3538 0.0009 9 7 4.2088 -0.0040 0.0000 10 6 3.5624 -1.1989 -0.0050 11 6 4.3408 -2.4891 -0.0110 12 6 2.2037 -1.2138 -0.0045 13 6 1.4557 -2.5220 -0.0094 14 6 1.2069 -2.9636 1.4098 15 8 1.5988 -2.2832 2.3341 16 7 0.5497 -4.1151 1.6518 17 6 0.3083 -4.5447 3.0315 18 6 -0.4513 -5.8728 3.0266 19 6 -0.7029 -6.3218 4.4674 20 6 -1.4505 -7.6303 4.4626 21 1 -1.7189 -8.0953 3.5255 22 6 -1.7917 -8.2337 5.6544 23 7 -1.4644 -7.6675 6.7954 24 14 -2.7178 -9.8560 5.6483 25 1 -2.9642 -10.2801 4.2467 26 1 -1.9098 -10.8897 6.3439 27 1 -4.0158 -9.6875 6.3496 28 1 -0.3633 -0.0043 1.0277 29 1 -0.3633 0.8922 -0.5101 30 1 -0.3632 -0.8878 -0.5176 31 1 6.7285 3.3989 0.0148 32 1 7.6455 1.9912 0.0092 33 1 4.5290 -2.8048 1.0152 34 1 3.7663 -3.2578 -0.5281 35 1 5.2903 -2.3382 -0.5246 36 1 0.5026 -2.3936 -0.5224 37 1 2.0478 -3.2772 -0.5264 38 1 0.2366 -4.6594 0.9125 39 1 1.2616 -4.6728 3.5443 40 1 -0.2840 -3.7897 3.5487 41 1 -1.4046 -5.7443 2.5139 42 1 0.1406 -6.6279 2.5092 43 1 0.2506 -6.4504 4.9797 44 1 -1.2946 -5.5668 4.9851 45 1 -1.7042 -8.0923 7.6339 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338563955.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:22 Heat of formation + Delta-G solvation = 86.166066 kcal Electronic energy + Delta-G solvation = -27470.493492 eV Core-core repulsion = 23525.099090 eV Total energy + Delta-G solvation = -3945.394401 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.07790 -40.28080 -38.99401 -35.82029 -35.59990 -34.97892 -33.41698 -32.76999 -31.72713 -31.29525 -29.37860 -28.94341 -27.52165 -26.26762 -23.63756 -22.76243 -22.51739 -21.29671 -20.86261 -20.10956 -18.98457 -18.36486 -17.34914 -16.73218 -16.64892 -16.45793 -16.04715 -15.64584 -15.52497 -14.92198 -14.51303 -14.44483 -14.33357 -14.03127 -13.94852 -13.53933 -13.47259 -12.93914 -12.68359 -12.60908 -12.58202 -12.34815 -12.09600 -11.89185 -11.82359 -11.64145 -10.96698 -10.81562 -10.62379 -10.58482 -10.28224 -10.16682 -10.02767 -9.94528 -9.47055 -9.16667 -8.93747 -8.91888 -8.64210 -8.42559 -6.06848 -4.10233 0.23138 0.52224 1.59462 2.46087 2.57470 2.65670 3.12215 3.26324 3.32633 3.34188 3.36353 3.38611 3.76402 3.97635 4.18981 4.39869 4.47802 4.58279 4.72131 4.82361 4.91519 5.00339 5.12940 5.26675 5.28710 5.29189 5.37600 5.55152 5.62458 5.67401 5.68543 5.79576 5.93044 5.99520 6.07138 6.34947 6.51030 6.72866 6.89181 6.92387 6.95296 7.31416 7.54524 7.57842 7.69386 7.91527 7.96993 8.21719 8.32533 8.96761 9.54429 11.04381 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.025823 B = 0.001913 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.062757 B =14634.194957 C =14998.167600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.257 3.743 3 N -0.472 5.472 4 C 0.478 3.522 5 N -0.564 5.564 6 C 0.516 3.484 7 N -0.813 5.813 8 N -0.386 5.386 9 N -0.316 5.316 10 C 0.226 3.774 11 C -0.125 4.125 12 C -0.179 4.179 13 C -0.092 4.092 14 C 0.507 3.493 15 O -0.535 6.535 16 N -0.723 5.723 17 C 0.116 3.884 18 C -0.121 4.121 19 C 0.023 3.977 20 C -0.523 4.523 21 H 0.056 0.944 22 C 0.056 3.944 23 N -0.893 5.893 24 Si 0.893 3.107 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.284 1.284 28 H 0.100 0.900 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.418 0.582 32 H 0.417 0.583 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.118 0.882 37 H 0.112 0.888 38 H 0.400 0.600 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.018 0.982 44 H 0.019 0.981 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.594 14.380 -20.078 26.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.094 3.906 3 N -0.190 5.190 4 C 0.117 3.883 5 N -0.305 5.305 6 C 0.145 3.855 7 N -0.369 5.369 8 N -0.230 5.230 9 N -0.094 5.094 10 C 0.105 3.895 11 C -0.181 4.181 12 C -0.187 4.187 13 C -0.133 4.133 14 C 0.291 3.709 15 O -0.412 6.412 16 N -0.374 5.374 17 C -0.006 4.006 18 C -0.159 4.159 19 C -0.015 4.015 20 C -0.561 4.561 21 H 0.074 0.926 22 C -0.145 4.145 23 N -0.532 5.532 24 Si 0.721 3.279 25 H -0.197 1.197 26 H -0.210 1.210 27 H -0.210 1.210 28 H 0.118 0.882 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.250 0.750 32 H 0.248 0.752 33 H 0.118 0.882 34 H 0.115 0.885 35 H 0.109 0.891 36 H 0.136 0.864 37 H 0.130 0.870 38 H 0.234 0.766 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.037 0.963 44 H 0.037 0.963 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.221 15.785 -19.198 27.270 hybrid contribution -0.015 -1.667 -0.070 1.668 sum 11.206 14.118 -19.269 26.385 Atomic orbital electron populations 1.20992 0.86375 1.04713 1.05045 1.21776 0.97864 0.86136 0.84842 1.67834 1.01820 1.28399 1.20920 1.22368 0.89980 0.81320 0.94587 1.70518 0.97247 1.26710 1.35992 1.20285 0.87427 0.87086 0.90662 1.40952 1.02446 1.08377 1.85137 1.78661 0.89255 1.11243 1.43839 1.48263 1.07044 1.07242 1.46898 1.20434 0.91295 0.86596 0.91129 1.21118 1.00676 0.91021 1.05324 1.19427 0.90938 0.96962 1.11378 1.20611 1.02478 0.93698 0.96470 1.20352 0.78542 0.81404 0.90575 1.90756 1.50587 1.54021 1.45832 1.46195 1.57792 1.23096 1.10349 1.21674 1.00641 0.97663 0.80669 1.21889 0.98403 0.93168 1.02393 1.19038 0.97216 0.96262 0.88967 1.21229 1.36353 1.06189 0.92347 0.92564 1.25039 0.96058 0.97738 0.95673 1.69976 1.46788 1.39130 0.97296 0.86527 0.79622 0.83719 0.78063 1.19747 1.21001 1.20984 0.88194 0.89006 0.89150 0.75040 0.75201 0.88150 0.88467 0.89137 0.86435 0.86977 0.76640 0.91755 0.91659 0.92626 0.92691 0.96316 0.96270 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 9.80 36.01 0.35 -0.46 16 2 C 0.26 2.80 6.83 -82.12 -0.56 2.24 16 3 N -0.47 -6.65 10.40 -10.05 -0.10 -6.75 16 4 C 0.48 7.36 8.99 -323.11 -2.90 4.46 16 5 N -0.56 -8.71 11.27 -14.86 -0.17 -8.87 16 6 C 0.52 6.78 9.38 -321.79 -3.02 3.76 16 7 N -0.81 -6.48 9.11 29.91 0.27 -6.21 16 8 N -0.39 -5.34 12.70 29.90 0.38 -4.96 16 9 N -0.32 -4.41 3.89 -10.11 -0.04 -4.45 16 10 C 0.23 2.53 6.85 -81.66 -0.56 1.97 16 11 C -0.12 -1.00 9.71 36.00 0.35 -0.65 16 12 C -0.18 -1.77 4.36 -104.83 -0.46 -2.23 16 13 C -0.09 -0.62 5.05 -29.03 -0.15 -0.76 16 14 C 0.51 5.72 7.82 -10.98 -0.09 5.63 16 15 O -0.54 -8.69 16.03 5.56 0.09 -8.60 16 16 N -0.72 -8.01 5.56 -60.29 -0.33 -8.34 16 17 C 0.12 1.80 5.67 -4.04 -0.02 1.78 16 18 C -0.12 -2.14 5.27 -26.73 -0.14 -2.28 16 19 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 20 C -0.52 -14.08 9.11 -34.44 -0.31 -14.39 16 21 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 22 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 23 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 24 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 28 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.09 0.37 6.01 -51.93 -0.31 0.06 16 31 H 0.42 2.50 8.96 -40.82 -0.37 2.14 16 32 H 0.42 2.28 8.96 -40.82 -0.37 1.92 16 33 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.10 0.47 5.98 -51.93 -0.31 0.16 16 35 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.12 0.43 6.02 -51.93 -0.31 0.11 16 37 H 0.11 0.44 5.98 -51.93 -0.31 0.12 16 38 H 0.40 3.12 8.47 -40.82 -0.35 2.78 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 380.22 15.07 5.73 5.73 Total: -1.00 -38.05 380.22 -12.29 -50.34 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -6.09 Total: 0.76 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: -7.74 Total: 0.95 kcal Atomic # 7 Polarization: -65.83 SS G_CDS: 0.74 Total: -65.09 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.09 Total: -8.60 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -38.05 -12.29 -50.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338563955.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.508 kcal (2) G-P(sol) polarization free energy of solvation -38.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds