Wall clock time and date at job start Tue Mar 31 2020 17:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31424 * 119.85203 * 2 1 4 4 C 1.33795 * 120.86265 * 179.75205 * 3 2 1 5 5 N 1.32904 * 132.36398 * 180.17763 * 4 3 2 6 6 C 1.33069 * 109.71417 * 180.28452 * 5 4 3 7 7 N 1.39231 * 125.28298 * 180.02562 * 6 5 4 8 8 N 1.31758 * 109.44113 * 0.02562 * 6 5 4 9 9 N 1.36635 * 120.28737 * 0.49131 * 4 3 2 10 10 C 1.35850 * 120.28654 * 359.75743 * 9 4 3 11 11 C 1.50693 * 120.48129 * 179.97438 * 10 9 4 12 12 C 1.35872 * 119.04254 * 359.97438 * 10 9 4 13 13 C 1.50698 * 120.38804 * 180.02562 * 12 10 9 14 14 C 1.50704 * 109.46739 * 90.00586 * 13 12 10 15 15 O 1.21280 * 119.99784 * 359.97438 * 14 13 12 16 16 N 1.34780 * 119.99844 * 180.02562 * 14 13 12 17 17 C 1.46498 * 119.99758 * 179.97438 * 16 14 13 18 18 C 1.52999 * 109.46928 * 179.97438 * 17 16 14 19 19 C 1.53001 * 109.47347 * 179.97438 * 18 17 16 20 20 C 1.50698 * 109.47452 * 180.02562 * 19 18 17 21 21 H 1.08002 * 119.99451 * 0.02562 * 20 19 18 22 22 C 1.37876 * 120.00147 * 180.02562 * 20 19 18 23 23 N 1.31515 * 119.99530 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99919 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47317 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.46941 * 119.99796 * 24 22 20 27 27 H 1.48500 * 109.46754 * 239.99675 * 24 22 20 28 28 H 1.09000 * 109.47105 * 269.76138 * 1 2 3 29 29 H 1.09001 * 109.46799 * 29.75749 * 1 2 3 30 30 H 1.08997 * 109.46684 * 149.75917 * 1 2 3 31 31 H 0.97000 * 119.99784 * 359.97263 * 7 6 5 32 32 H 0.96998 * 120.00384 * 179.97438 * 7 6 5 33 33 H 1.09005 * 109.47555 * 90.00044 * 11 10 9 34 34 H 1.09006 * 109.47443 * 209.99966 * 11 10 9 35 35 H 1.09000 * 109.47425 * 329.99652 * 11 10 9 36 36 H 1.08994 * 109.47098 * 210.00132 * 13 12 10 37 37 H 1.09004 * 109.47263 * 330.00778 * 13 12 10 38 38 H 0.96993 * 119.99639 * 359.97438 * 16 14 13 39 39 H 1.09004 * 109.47315 * 300.00040 * 17 16 14 40 40 H 1.09004 * 109.46973 * 59.99989 * 17 16 14 41 41 H 1.09004 * 109.47386 * 300.00279 * 18 17 16 42 42 H 1.09004 * 109.47071 * 60.00332 * 18 17 16 43 43 H 1.09004 * 109.47149 * 300.00477 * 19 18 17 44 44 H 1.09004 * 109.46721 * 60.00170 * 19 18 17 45 45 H 0.97006 * 119.99322 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1612 1.1399 0.0000 4 6 3.4990 1.1635 0.0050 5 7 4.3770 2.1611 0.0092 6 6 5.6140 1.6704 0.0071 7 7 6.7806 2.4303 0.0107 8 7 5.5634 0.3538 0.0009 9 7 4.2088 -0.0040 0.0000 10 6 3.5624 -1.1989 -0.0050 11 6 4.3408 -2.4891 -0.0110 12 6 2.2037 -1.2138 -0.0045 13 6 1.4557 -2.5220 -0.0094 14 6 1.2069 -2.9636 1.4098 15 8 1.5988 -2.2832 2.3341 16 7 0.5497 -4.1151 1.6518 17 6 0.3083 -4.5447 3.0315 18 6 -0.4513 -5.8728 3.0266 19 6 -0.7029 -6.3218 4.4674 20 6 -1.4505 -7.6303 4.4626 21 1 -1.7189 -8.0953 3.5255 22 6 -1.7917 -8.2337 5.6544 23 7 -1.4644 -7.6675 6.7954 24 14 -2.7178 -9.8560 5.6483 25 1 -2.9642 -10.2801 4.2467 26 1 -1.9098 -10.8897 6.3439 27 1 -4.0158 -9.6875 6.3496 28 1 -0.3633 -0.0043 1.0277 29 1 -0.3633 0.8922 -0.5101 30 1 -0.3632 -0.8878 -0.5176 31 1 6.7285 3.3989 0.0148 32 1 7.6455 1.9912 0.0092 33 1 4.5290 -2.8048 1.0152 34 1 3.7663 -3.2578 -0.5281 35 1 5.2903 -2.3382 -0.5246 36 1 0.5026 -2.3936 -0.5224 37 1 2.0478 -3.2772 -0.5264 38 1 0.2366 -4.6594 0.9125 39 1 1.2616 -4.6728 3.5443 40 1 -0.2840 -3.7897 3.5487 41 1 -1.4046 -5.7443 2.5139 42 1 0.1406 -6.6279 2.5092 43 1 0.2506 -6.4504 4.9797 44 1 -1.2946 -5.5668 4.9851 45 1 -1.7042 -8.0923 7.6339 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338563955.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:21 Heat of formation + Delta-G solvation = 61.283505 kcal Electronic energy + Delta-G solvation = -27471.572481 eV Core-core repulsion = 23525.099090 eV Total energy + Delta-G solvation = -3946.473390 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.98790 -41.17346 -39.93990 -36.94877 -36.61658 -35.82148 -35.13998 -33.65208 -32.88696 -32.57083 -30.17394 -29.78810 -28.70083 -27.49875 -25.05567 -23.95065 -23.33722 -22.23495 -22.19672 -21.28234 -19.81842 -19.22198 -18.52395 -18.21148 -17.59464 -17.45826 -16.92949 -16.67660 -16.63453 -16.37912 -15.76463 -15.46699 -15.20732 -14.84640 -14.74412 -14.48399 -14.33595 -14.15870 -13.75808 -13.67890 -13.57330 -13.35818 -13.29249 -13.21392 -12.77109 -12.72150 -12.49675 -12.37360 -12.29656 -11.60834 -11.55734 -11.37928 -11.28798 -11.18196 -11.03388 -10.79811 -10.53828 -10.00393 -9.86257 -9.47964 -8.17412 -6.28419 -0.59325 -0.38216 0.74932 1.43632 1.44231 1.54917 1.56923 1.71080 1.83463 2.16696 2.40586 2.47554 2.54222 3.06633 3.16988 3.17801 3.50249 3.72722 3.89869 4.02708 4.20368 4.28297 4.29499 4.38805 4.40307 4.57176 4.63199 4.66360 4.74536 4.76051 4.83592 4.97526 5.02224 5.05487 5.09356 5.19482 5.24280 5.29000 5.51238 5.59558 5.76240 5.88511 6.12365 6.21744 6.25301 6.46261 6.69504 6.90808 7.15438 7.37826 7.41676 8.94747 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.025823 B = 0.001913 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.062757 B =14634.194957 C =14998.167600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.250 3.750 3 N -0.504 5.504 4 C 0.455 3.545 5 N -0.597 5.597 6 C 0.505 3.495 7 N -0.792 5.792 8 N -0.404 5.404 9 N -0.325 5.325 10 C 0.207 3.793 11 C -0.121 4.121 12 C -0.175 4.175 13 C -0.080 4.080 14 C 0.509 3.491 15 O -0.590 6.590 16 N -0.708 5.708 17 C 0.130 3.870 18 C -0.101 4.101 19 C 0.020 3.980 20 C -0.536 4.536 21 H 0.070 0.930 22 C -0.006 4.006 23 N -0.937 5.937 24 Si 0.966 3.034 25 H -0.255 1.255 26 H -0.283 1.283 27 H -0.282 1.282 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.129 0.871 31 H 0.427 0.573 32 H 0.429 0.571 33 H 0.089 0.911 34 H 0.136 0.864 35 H 0.088 0.912 36 H 0.162 0.838 37 H 0.154 0.846 38 H 0.421 0.579 39 H 0.044 0.956 40 H 0.046 0.954 41 H 0.072 0.928 42 H 0.071 0.929 43 H -0.011 1.011 44 H -0.010 1.010 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.517 12.364 -22.949 27.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.089 3.911 3 N -0.223 5.223 4 C 0.094 3.906 5 N -0.340 5.340 6 C 0.134 3.866 7 N -0.351 5.351 8 N -0.249 5.249 9 N -0.103 5.103 10 C 0.087 3.913 11 C -0.177 4.177 12 C -0.183 4.183 13 C -0.120 4.120 14 C 0.297 3.703 15 O -0.470 6.470 16 N -0.361 5.361 17 C 0.006 3.994 18 C -0.139 4.139 19 C -0.018 4.018 20 C -0.574 4.574 21 H 0.088 0.912 22 C -0.203 4.203 23 N -0.577 5.577 24 Si 0.790 3.210 25 H -0.179 1.179 26 H -0.209 1.209 27 H -0.208 1.208 28 H 0.111 0.889 29 H 0.116 0.884 30 H 0.147 0.853 31 H 0.261 0.739 32 H 0.262 0.738 33 H 0.108 0.892 34 H 0.154 0.846 35 H 0.107 0.893 36 H 0.179 0.821 37 H 0.171 0.829 38 H 0.259 0.741 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.007 0.993 44 H 0.008 0.992 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.145 13.740 -22.130 27.955 hybrid contribution 0.314 -1.014 0.855 1.363 sum 10.460 12.726 -21.275 26.907 Atomic orbital electron populations 1.21189 0.83720 1.07028 1.05147 1.22521 0.99530 0.85884 0.83121 1.67897 1.01448 1.30246 1.22722 1.22630 0.90682 0.82044 0.95265 1.70451 0.98197 1.27806 1.37524 1.20703 0.88064 0.87342 0.90474 1.40979 1.01591 1.08685 1.83813 1.78536 0.89736 1.11622 1.45008 1.48372 1.06885 1.07847 1.47190 1.21189 0.92311 0.86855 0.90948 1.21232 1.01033 0.90397 1.05073 1.19812 0.90625 0.98056 1.09850 1.20753 1.04987 0.92737 0.93501 1.21070 0.76980 0.80353 0.91929 1.90762 1.52630 1.55553 1.48066 1.45878 1.57727 1.23512 1.08943 1.21164 0.98957 0.96134 0.83150 1.21585 0.99861 0.94432 0.98015 1.18977 0.94905 0.95053 0.92825 1.21746 1.35883 1.06985 0.92832 0.91221 1.26034 0.97184 1.01737 0.95377 1.70127 1.48446 1.41109 0.98057 0.85387 0.77900 0.78837 0.78840 1.17874 1.20877 1.20831 0.88856 0.88365 0.85257 0.73922 0.73769 0.89236 0.84563 0.89305 0.82058 0.82887 0.74084 0.93738 0.93509 0.90929 0.91083 0.99289 0.99177 0.92965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.34 9.80 71.24 0.70 -0.64 16 2 C 0.25 5.14 6.83 43.04 0.29 5.43 16 3 N -0.50 -14.43 10.40 -185.70 -1.93 -16.36 16 4 C 0.45 14.50 8.99 261.59 2.35 16.85 16 5 N -0.60 -19.28 11.27 -200.94 -2.27 -21.55 16 6 C 0.50 13.70 9.38 261.13 2.45 16.14 16 7 N -0.79 -12.72 9.11 -59.29 -0.54 -13.26 16 8 N -0.40 -11.46 12.70 -59.31 -0.75 -12.22 16 9 N -0.32 -9.19 3.89 -185.89 -0.72 -9.91 16 10 C 0.21 4.40 6.85 41.39 0.28 4.68 16 11 C -0.12 -1.69 9.71 71.23 0.69 -1.00 16 12 C -0.18 -3.08 4.36 -20.00 -0.09 -3.16 16 13 C -0.08 -0.70 5.05 29.10 0.15 -0.55 16 14 C 0.51 9.98 7.82 87.66 0.69 10.67 16 15 O -0.59 -18.70 16.03 -3.03 -0.05 -18.75 16 16 N -0.71 -13.31 5.56 -463.05 -2.57 -15.88 16 17 C 0.13 3.91 5.67 86.38 0.49 4.40 16 18 C -0.10 -3.41 5.27 30.59 0.16 -3.25 16 19 C 0.02 0.99 4.97 29.85 0.15 1.14 16 20 C -0.54 -28.61 9.11 25.60 0.23 -28.37 16 21 H 0.07 3.45 7.74 -2.91 -0.02 3.42 16 22 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 23 N -0.94 -56.20 13.29 21.45 0.28 -55.91 16 24 Si 0.97 42.47 29.54 68.60 2.03 44.50 16 25 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 26 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 27 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 28 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.13 0.43 6.01 -2.39 -0.01 0.41 16 31 H 0.43 5.12 8.96 -92.71 -0.83 4.29 16 32 H 0.43 4.57 8.96 -92.71 -0.83 3.74 16 33 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 34 H 0.14 0.71 5.98 -2.38 -0.01 0.70 16 35 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.16 0.07 6.02 -2.39 -0.01 0.06 16 37 H 0.15 0.18 5.98 -2.39 -0.01 0.17 16 38 H 0.42 4.42 8.47 -92.71 -0.79 3.63 16 39 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 40 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 42 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 43 H -0.01 -0.62 8.14 -2.38 -0.02 -0.64 16 44 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 45 H 0.26 14.79 8.31 -92.70 -0.77 14.02 16 Total: -1.00 -89.11 380.22 1.12 -88.00 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -1.37 Total: 8.88 kcal Atomic # 6 Polarization: 13.45 SS G_CDS: 9.01 Total: 22.46 kcal Atomic # 7 Polarization: -136.58 SS G_CDS: -8.50 Total: -145.08 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -0.05 Total: -18.75 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -89.11 1.12 -88.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338563955.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.281 kcal (2) G-P(sol) polarization free energy of solvation -89.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds