Wall clock time and date at job start Tue Mar 31 2020 18:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 119.99731 * 2 1 4 4 C 1.50697 * 119.99809 * 180.02562 * 2 1 3 5 5 N 1.46497 * 109.47323 * 95.21982 * 4 2 1 6 6 C 1.37475 * 127.17611 * 273.95953 * 5 4 2 7 7 C 1.47984 * 126.47310 * 359.95599 * 6 5 4 8 8 C 1.41012 * 126.25595 * 340.81091 * 7 6 5 9 9 N 1.30638 * 108.08343 * 180.02562 * 8 7 6 10 10 N 1.39998 * 108.58598 * 359.97438 * 9 8 7 11 11 C 1.46505 * 125.86671 * 179.97438 * 10 9 8 12 12 C 1.50695 * 109.47008 * 305.02639 * 11 10 9 13 13 H 1.07999 * 120.00472 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00004 * 180.02562 * 12 11 10 15 15 N 1.31520 * 119.99833 * 0.27174 * 14 12 11 16 16 Si 1.86796 * 120.00254 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47118 * 90.00054 * 16 14 12 18 18 H 1.48503 * 109.47230 * 209.99823 * 16 14 12 19 19 H 1.48501 * 109.47269 * 329.99963 * 16 14 12 20 20 C 1.34819 * 108.26146 * 0.23896 * 10 9 8 21 21 N 1.31221 * 107.05396 * 179.69885 * 6 5 4 22 22 N 1.28514 * 109.96183 * 0.26115 * 21 6 5 23 23 C 1.31211 * 110.09951 * 0.02562 * 22 21 6 24 24 N 1.38578 * 126.37371 * 179.97438 * 23 22 21 25 25 C 1.46897 * 111.00332 * 352.25166 * 24 23 22 26 26 O 1.46308 * 110.99609 * 228.30095 * 24 23 22 27 27 C 1.42904 * 113.99877 * 231.05345 * 26 24 23 28 28 H 1.08002 * 120.00333 * 5.54956 * 1 2 3 29 29 H 1.08004 * 119.99780 * 185.55014 * 1 2 3 30 30 H 1.08994 * 109.47415 * 241.66330 * 3 2 1 31 31 H 1.08991 * 109.47395 * 1.66956 * 3 2 1 32 32 H 1.09004 * 109.46535 * 121.66842 * 3 2 1 33 33 H 1.08991 * 109.47347 * 335.21211 * 4 2 1 34 34 H 1.09002 * 109.46635 * 215.21398 * 4 2 1 35 35 H 1.07997 * 125.95768 * 359.97438 * 8 7 6 36 36 H 1.09003 * 109.46829 * 185.02643 * 11 10 9 37 37 H 1.08997 * 109.47201 * 65.02572 * 11 10 9 38 38 H 0.97006 * 119.99718 * 359.73439 * 15 14 12 39 39 H 1.08001 * 126.20922 * 179.73150 * 20 10 9 40 40 H 1.08998 * 109.46920 * 60.00534 * 25 24 23 41 41 H 1.08998 * 109.47173 * 180.02562 * 25 24 23 42 42 H 1.09000 * 109.47208 * 300.00292 * 25 24 23 43 43 H 1.08999 * 109.47037 * 64.79228 * 27 26 24 44 44 H 1.09001 * 109.46634 * 184.79114 * 27 26 24 45 45 H 1.09000 * 109.46917 * 304.79303 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0634 -1.3051 -0.0006 5 7 2.4164 -1.6646 -1.3762 6 6 1.6405 -2.3496 -2.2810 7 6 0.2751 -2.8719 -2.0512 8 6 -0.3292 -3.1039 -0.7984 9 7 -1.5334 -3.5648 -1.0082 10 7 -1.7462 -3.6448 -2.3896 11 6 -2.9705 -4.1134 -3.0438 12 6 -3.3134 -5.4915 -2.5396 13 1 -2.6824 -5.9706 -1.8057 14 6 -4.4323 -6.1413 -3.0161 15 7 -5.1973 -5.5605 -3.9146 16 14 -4.8571 -7.8498 -2.3918 17 1 -5.7353 -7.7370 -1.1996 18 1 -5.5638 -8.6048 -3.4575 19 1 -3.6099 -8.5659 -2.0218 20 6 -0.6289 -3.2220 -3.0143 21 7 2.3371 -2.4480 -3.3886 22 7 3.4820 -1.8839 -3.2385 23 6 3.5867 -1.3917 -2.0267 24 7 4.6784 -0.7155 -1.5058 25 6 5.8181 -0.7634 -2.4313 26 8 5.0464 -1.2465 -0.1931 27 6 5.1813 -0.2483 0.8207 28 1 -0.5401 0.9309 -0.0904 29 1 -0.5400 -0.9310 0.0905 30 1 2.6675 1.3760 -0.9045 31 1 1.3555 2.1333 0.0299 32 1 2.7123 1.3499 0.8747 33 1 1.4372 -2.0864 0.4299 34 1 2.9722 -1.2002 0.5921 35 1 0.1247 -2.9315 0.1663 36 1 -2.8154 -4.1492 -4.1221 37 1 -3.7884 -3.4296 -2.8168 38 1 -4.9764 -4.6734 -4.2391 39 1 -0.4764 -3.1684 -4.0822 40 1 5.5380 -0.2990 -3.3768 41 1 6.6612 -0.2256 -1.9977 42 1 6.1008 -1.8015 -2.6061 43 1 4.2136 0.2200 1.0005 44 1 5.5376 -0.7111 1.7410 45 1 5.8955 0.5073 0.4937 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341723075.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:42 Heat of formation + Delta-G solvation = 192.540777 kcal Electronic energy + Delta-G solvation = -28884.613612 eV Core-core repulsion = 24943.831964 eV Total energy + Delta-G solvation = -3940.781648 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.80810 -40.64837 -38.02282 -37.00503 -34.49138 -34.16292 -33.49718 -31.85973 -30.93527 -28.51922 -27.82738 -27.51051 -26.87878 -26.60235 -25.30606 -23.55049 -22.40658 -21.38818 -20.34232 -19.89523 -19.12564 -18.08835 -17.40149 -16.69482 -16.37751 -16.26701 -15.90194 -15.67936 -15.01937 -14.63145 -14.47903 -14.42267 -13.96996 -13.90173 -13.62566 -13.49794 -13.38712 -12.89017 -12.71582 -12.43303 -12.34853 -12.14976 -12.07171 -11.93333 -11.57269 -11.43873 -11.25895 -10.84563 -10.77941 -10.63944 -10.44690 -10.21822 -10.17215 -9.97307 -9.48319 -9.39997 -9.05125 -8.71291 -8.57430 -7.60657 -6.65991 -4.41148 1.12943 1.62472 2.03842 2.48743 2.58820 2.99470 3.16464 3.34753 3.37373 3.48389 3.54528 4.17284 4.32115 4.35176 4.44637 4.57712 4.80975 4.90121 4.94108 4.97320 4.98449 5.05964 5.09844 5.13738 5.19917 5.24178 5.26876 5.33397 5.48515 5.55726 5.61898 5.68361 5.74387 5.77491 5.90484 6.21155 6.30193 6.37047 6.41879 6.44880 6.52190 6.56859 6.86513 7.04046 7.46770 7.55985 8.18277 8.23502 8.51895 8.80710 9.27000 10.72180 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.020273 B = 0.002807 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.833124 B = 9973.536488 C =10486.361104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.164 4.164 3 C -0.114 4.114 4 C 0.140 3.860 5 N -0.460 5.460 6 C 0.304 3.696 7 C -0.207 4.207 8 C 0.035 3.965 9 N -0.265 5.265 10 N -0.313 5.313 11 C 0.244 3.756 12 C -0.612 4.612 13 H 0.065 0.935 14 C 0.025 3.975 15 N -0.902 5.902 16 Si 1.080 2.920 17 H -0.284 1.284 18 H -0.281 1.281 19 H -0.286 1.286 20 C 0.112 3.888 21 N -0.289 5.289 22 N -0.295 5.295 23 C 0.325 3.675 24 N -0.275 5.275 25 C 0.026 3.974 26 O -0.256 6.256 27 C 0.024 3.976 28 H 0.104 0.896 29 H 0.109 0.891 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.174 0.826 36 H 0.049 0.951 37 H 0.040 0.960 38 H 0.268 0.732 39 H 0.180 0.820 40 H 0.103 0.897 41 H 0.084 0.916 42 H 0.056 0.944 43 H 0.053 0.947 44 H 0.097 0.903 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.095 14.472 9.433 25.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.165 4.165 3 C -0.170 4.170 4 C 0.018 3.982 5 N -0.155 5.155 6 C 0.039 3.961 7 C -0.223 4.223 8 C -0.153 4.153 9 N -0.086 5.086 10 N -0.090 5.090 11 C 0.126 3.874 12 C -0.650 4.650 13 H 0.084 0.916 14 C -0.180 4.180 15 N -0.537 5.537 16 Si 0.906 3.094 17 H -0.211 1.211 18 H -0.207 1.207 19 H -0.212 1.212 20 C -0.043 4.043 21 N -0.130 5.130 22 N -0.144 5.144 23 C -0.031 4.031 24 N -0.044 5.044 25 C -0.121 4.121 26 O -0.253 6.253 27 C -0.073 4.073 28 H 0.122 0.878 29 H 0.127 0.873 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.118 0.882 34 H 0.124 0.876 35 H 0.190 0.810 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.078 0.922 39 H 0.197 0.803 40 H 0.121 0.879 41 H 0.103 0.897 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.115 0.885 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 17.119 12.713 8.569 22.980 hybrid contribution 1.838 1.444 1.062 2.568 sum 18.957 14.157 9.631 25.545 Atomic orbital electron populations 1.24142 0.95072 1.03186 0.96211 1.21744 0.95539 0.95050 1.04200 1.20858 1.00140 0.93836 1.02171 1.21025 1.01778 0.95708 0.79694 1.46095 1.12429 1.43584 1.13404 1.21874 0.93209 0.95384 0.85680 1.17145 0.91309 1.20307 0.93559 1.23803 0.93047 1.01158 0.97247 1.77365 1.16734 1.20163 0.94365 1.49231 1.12759 1.43594 1.03404 1.19920 0.78180 0.96944 0.92314 1.22084 1.14056 1.00149 1.28682 0.91632 1.25933 0.92308 1.05341 0.94392 1.70834 1.38958 1.16349 1.27585 0.83376 0.75998 0.73851 0.76141 1.21063 1.20674 1.21231 1.22546 0.86485 0.96104 0.99184 1.74392 0.99753 1.18986 1.19878 1.74493 1.13705 1.12592 1.13590 1.22485 0.87434 1.02200 0.90980 1.64423 1.03608 1.40969 0.95409 1.22678 0.91077 1.03124 0.95239 1.90902 1.91104 1.29754 1.13561 1.22956 1.01326 0.93423 0.89592 0.87752 0.87320 0.91385 0.91792 0.91607 0.88169 0.87634 0.80976 0.93301 0.94212 0.92183 0.80322 0.87915 0.89721 0.92474 0.92858 0.88489 0.92744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 13.82 29.01 0.40 -1.20 16 2 C -0.16 -1.69 5.63 -101.07 -0.57 -2.26 16 3 C -0.11 -0.96 9.66 36.00 0.35 -0.61 16 4 C 0.14 1.55 5.86 -5.20 -0.03 1.52 16 5 N -0.46 -6.61 2.82 -115.90 -0.33 -6.94 16 6 C 0.30 5.18 7.90 -153.83 -1.22 3.96 16 7 C -0.21 -3.64 6.04 -105.43 -0.64 -4.28 16 8 C 0.03 0.59 9.06 -17.01 -0.15 0.43 16 9 N -0.27 -5.53 12.36 30.83 0.38 -5.14 16 10 N -0.31 -6.72 3.66 -62.22 -0.23 -6.95 16 11 C 0.24 5.84 5.57 -5.19 -0.03 5.81 16 12 C -0.61 -16.57 9.23 -34.44 -0.32 -16.89 16 13 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 14 C 0.03 0.69 5.46 -17.82 -0.10 0.60 16 15 N -0.90 -25.66 13.65 55.43 0.76 -24.90 16 16 Si 1.08 24.48 29.90 -169.99 -5.08 19.40 16 17 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 20 C 0.11 2.10 11.41 -16.81 -0.19 1.91 16 21 N -0.29 -5.37 12.22 32.60 0.40 -4.98 16 22 N -0.29 -5.05 11.29 30.35 0.34 -4.71 16 23 C 0.33 4.77 7.69 -318.62 -2.45 2.32 16 24 N -0.27 -3.13 5.11 -68.01 -0.35 -3.48 16 25 C 0.03 0.24 9.51 60.06 0.57 0.82 16 26 O -0.26 -2.68 9.46 -13.93 -0.13 -2.81 16 27 C 0.02 0.15 10.72 101.05 1.08 1.24 16 28 H 0.10 1.02 7.85 -52.49 -0.41 0.60 16 29 H 0.11 1.31 5.32 -52.48 -0.28 1.03 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.49 7.79 -51.93 -0.40 0.09 16 32 H 0.07 0.43 6.45 -51.93 -0.34 0.10 16 33 H 0.10 1.06 4.79 -51.93 -0.25 0.81 16 34 H 0.11 1.01 4.40 -51.93 -0.23 0.79 16 35 H 0.17 2.31 5.10 -52.49 -0.27 2.04 16 36 H 0.05 1.14 7.93 -51.93 -0.41 0.73 16 37 H 0.04 0.98 8.01 -51.93 -0.42 0.57 16 38 H 0.27 7.42 7.22 -40.82 -0.29 7.12 16 39 H 0.18 2.99 8.06 -52.49 -0.42 2.57 16 40 H 0.10 0.94 8.03 -51.93 -0.42 0.52 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.05 0.33 4.80 -51.93 -0.25 0.08 16 44 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 373.64 15.07 5.63 5.63 Total: -1.00 -32.64 373.64 -7.60 -40.24 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -5.71 Total: 1.28 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -3.29 Total: -6.63 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: 0.98 Total: -57.10 kcal Atomic # 8 Polarization: -2.68 SS G_CDS: -0.13 Total: -2.81 kcal Atomic # 14 Polarization: 24.48 SS G_CDS: -5.08 Total: 19.40 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.64 -7.60 -40.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341723075.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 232.780 kcal (2) G-P(sol) polarization free energy of solvation -32.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 200.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 192.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds