Wall clock time and date at job start Tue Mar 31 2020 18:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 119.99731 * 2 1 4 4 C 1.50697 * 119.99809 * 180.02562 * 2 1 3 5 5 N 1.46497 * 109.47323 * 95.21982 * 4 2 1 6 6 C 1.37475 * 127.17611 * 273.95953 * 5 4 2 7 7 C 1.47984 * 126.47310 * 359.95599 * 6 5 4 8 8 C 1.41012 * 126.25595 * 340.81091 * 7 6 5 9 9 N 1.30638 * 108.08343 * 180.02562 * 8 7 6 10 10 N 1.39998 * 108.58598 * 359.97438 * 9 8 7 11 11 C 1.46505 * 125.86671 * 179.97438 * 10 9 8 12 12 C 1.50695 * 109.47008 * 305.02639 * 11 10 9 13 13 H 1.07999 * 120.00472 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00004 * 180.02562 * 12 11 10 15 15 N 1.31520 * 119.99833 * 0.27174 * 14 12 11 16 16 Si 1.86796 * 120.00254 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47118 * 90.00054 * 16 14 12 18 18 H 1.48503 * 109.47230 * 209.99823 * 16 14 12 19 19 H 1.48501 * 109.47269 * 329.99963 * 16 14 12 20 20 C 1.34819 * 108.26146 * 0.23896 * 10 9 8 21 21 N 1.31221 * 107.05396 * 179.69885 * 6 5 4 22 22 N 1.28514 * 109.96183 * 0.26115 * 21 6 5 23 23 C 1.31211 * 110.09951 * 0.02562 * 22 21 6 24 24 N 1.38578 * 126.37371 * 179.97438 * 23 22 21 25 25 C 1.46897 * 111.00332 * 352.25166 * 24 23 22 26 26 O 1.46308 * 110.99609 * 228.30095 * 24 23 22 27 27 C 1.42904 * 113.99877 * 231.05345 * 26 24 23 28 28 H 1.08002 * 120.00333 * 5.54956 * 1 2 3 29 29 H 1.08004 * 119.99780 * 185.55014 * 1 2 3 30 30 H 1.08994 * 109.47415 * 241.66330 * 3 2 1 31 31 H 1.08991 * 109.47395 * 1.66956 * 3 2 1 32 32 H 1.09004 * 109.46535 * 121.66842 * 3 2 1 33 33 H 1.08991 * 109.47347 * 335.21211 * 4 2 1 34 34 H 1.09002 * 109.46635 * 215.21398 * 4 2 1 35 35 H 1.07997 * 125.95768 * 359.97438 * 8 7 6 36 36 H 1.09003 * 109.46829 * 185.02643 * 11 10 9 37 37 H 1.08997 * 109.47201 * 65.02572 * 11 10 9 38 38 H 0.97006 * 119.99718 * 359.73439 * 15 14 12 39 39 H 1.08001 * 126.20922 * 179.73150 * 20 10 9 40 40 H 1.08998 * 109.46920 * 60.00534 * 25 24 23 41 41 H 1.08998 * 109.47173 * 180.02562 * 25 24 23 42 42 H 1.09000 * 109.47208 * 300.00292 * 25 24 23 43 43 H 1.08999 * 109.47037 * 64.79228 * 27 26 24 44 44 H 1.09001 * 109.46634 * 184.79114 * 27 26 24 45 45 H 1.09000 * 109.46917 * 304.79303 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0634 -1.3051 -0.0006 5 7 2.4164 -1.6646 -1.3762 6 6 1.6405 -2.3496 -2.2810 7 6 0.2751 -2.8719 -2.0512 8 6 -0.3292 -3.1039 -0.7984 9 7 -1.5334 -3.5648 -1.0082 10 7 -1.7462 -3.6448 -2.3896 11 6 -2.9705 -4.1134 -3.0438 12 6 -3.3134 -5.4915 -2.5396 13 1 -2.6824 -5.9706 -1.8057 14 6 -4.4323 -6.1413 -3.0161 15 7 -5.1973 -5.5605 -3.9146 16 14 -4.8571 -7.8498 -2.3918 17 1 -5.7353 -7.7370 -1.1996 18 1 -5.5638 -8.6048 -3.4575 19 1 -3.6099 -8.5659 -2.0218 20 6 -0.6289 -3.2220 -3.0143 21 7 2.3371 -2.4480 -3.3886 22 7 3.4820 -1.8839 -3.2385 23 6 3.5867 -1.3917 -2.0267 24 7 4.6784 -0.7155 -1.5058 25 6 5.8181 -0.7634 -2.4313 26 8 5.0464 -1.2465 -0.1931 27 6 5.1813 -0.2483 0.8207 28 1 -0.5401 0.9309 -0.0904 29 1 -0.5400 -0.9310 0.0905 30 1 2.6675 1.3760 -0.9045 31 1 1.3555 2.1333 0.0299 32 1 2.7123 1.3499 0.8747 33 1 1.4372 -2.0864 0.4299 34 1 2.9722 -1.2002 0.5921 35 1 0.1247 -2.9315 0.1663 36 1 -2.8154 -4.1492 -4.1221 37 1 -3.7884 -3.4296 -2.8168 38 1 -4.9764 -4.6734 -4.2391 39 1 -0.4764 -3.1684 -4.0822 40 1 5.5380 -0.2990 -3.3768 41 1 6.6612 -0.2256 -1.9977 42 1 6.1008 -1.8015 -2.6061 43 1 4.2136 0.2200 1.0005 44 1 5.5376 -0.7111 1.7410 45 1 5.8955 0.5073 0.4937 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341723075.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:41 Heat of formation + Delta-G solvation = 174.914847 kcal Electronic energy + Delta-G solvation = -28885.377930 eV Core-core repulsion = 24943.831964 eV Total energy + Delta-G solvation = -3941.545965 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.01401 -42.15486 -38.86194 -37.92575 -36.15043 -35.28235 -34.56526 -33.55912 -32.30501 -29.91966 -28.66144 -28.49075 -28.20201 -27.50991 -26.14218 -25.46402 -23.75091 -22.63823 -21.76663 -21.21196 -20.06030 -19.28508 -18.98284 -18.01487 -17.62325 -17.26397 -16.99795 -16.59348 -16.16413 -15.89686 -15.70784 -15.65461 -15.42726 -15.07720 -14.78955 -14.33471 -14.28326 -14.14043 -14.08106 -13.78243 -13.50927 -13.28041 -13.05237 -13.01193 -12.79100 -12.64100 -12.60447 -12.37813 -11.97725 -11.90895 -11.85362 -11.36933 -11.31228 -11.25874 -11.15134 -10.71486 -10.46629 -10.26805 -10.10690 -9.02061 -8.78491 -6.57847 0.05573 0.66248 0.78724 1.14146 1.44887 1.51712 1.58249 1.62084 1.78649 1.93056 2.15886 2.47504 2.99794 3.23653 3.29780 3.44721 3.58434 3.60435 3.77788 3.93730 4.10050 4.15631 4.27296 4.39972 4.41389 4.44615 4.52654 4.56244 4.57472 4.60916 4.73531 4.77441 4.82806 4.84382 4.87872 4.88710 4.90368 5.10281 5.26697 5.40568 5.49491 5.57136 5.60926 5.71185 5.76661 5.95427 6.14238 6.36295 6.67609 7.17332 7.56902 8.57629 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.020273 B = 0.002807 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.833124 B = 9973.536488 C =10486.361104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.160 4.160 3 C -0.111 4.111 4 C 0.133 3.867 5 N -0.455 5.455 6 C 0.288 3.712 7 C -0.197 4.197 8 C 0.058 3.942 9 N -0.305 5.305 10 N -0.335 5.335 11 C 0.255 3.745 12 C -0.622 4.622 13 H 0.049 0.951 14 C -0.017 4.017 15 N -0.923 5.923 16 Si 1.121 2.879 17 H -0.271 1.271 18 H -0.276 1.276 19 H -0.278 1.278 20 C 0.104 3.896 21 N -0.317 5.317 22 N -0.326 5.326 23 C 0.340 3.660 24 N -0.273 5.273 25 C 0.025 3.975 26 O -0.265 6.265 27 C 0.014 3.986 28 H 0.114 0.886 29 H 0.094 0.906 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.105 0.895 34 H 0.125 0.875 35 H 0.208 0.792 36 H 0.051 0.949 37 H 0.026 0.974 38 H 0.262 0.738 39 H 0.192 0.808 40 H 0.100 0.900 41 H 0.117 0.883 42 H 0.044 0.956 43 H 0.058 0.942 44 H 0.121 0.879 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.187 15.446 11.495 28.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.161 4.161 3 C -0.167 4.167 4 C 0.012 3.988 5 N -0.149 5.149 6 C 0.022 3.978 7 C -0.213 4.213 8 C -0.129 4.129 9 N -0.125 5.125 10 N -0.113 5.113 11 C 0.136 3.864 12 C -0.660 4.660 13 H 0.067 0.933 14 C -0.217 4.217 15 N -0.559 5.559 16 Si 0.942 3.058 17 H -0.197 1.197 18 H -0.201 1.201 19 H -0.203 1.203 20 C -0.049 4.049 21 N -0.158 5.158 22 N -0.175 5.175 23 C -0.017 4.017 24 N -0.042 5.042 25 C -0.121 4.121 26 O -0.263 6.263 27 C -0.082 4.082 28 H 0.132 0.868 29 H 0.112 0.888 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.122 0.878 34 H 0.143 0.857 35 H 0.225 0.775 36 H 0.069 0.931 37 H 0.044 0.956 38 H 0.072 0.928 39 H 0.209 0.791 40 H 0.119 0.881 41 H 0.136 0.864 42 H 0.063 0.937 43 H 0.076 0.924 44 H 0.139 0.861 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 19.236 13.723 10.634 25.912 hybrid contribution 1.430 1.322 0.550 2.024 sum 20.666 15.045 11.184 27.902 Atomic orbital electron populations 1.24159 0.95426 1.03045 0.96981 1.21852 0.95363 0.95488 1.03415 1.20877 1.00319 0.92933 1.02564 1.21316 1.02956 0.96278 0.78215 1.46219 1.11854 1.42827 1.14038 1.21666 0.93119 0.96706 0.86338 1.17182 0.91394 1.19311 0.93404 1.24307 0.91630 0.98529 0.98467 1.77310 1.18754 1.22261 0.94199 1.48914 1.12783 1.45674 1.03918 1.19527 0.79132 0.95308 0.92442 1.22281 1.13910 1.01564 1.28259 0.93290 1.27231 0.92209 1.08298 0.93961 1.70922 1.39728 1.16479 1.28793 0.82853 0.76402 0.70280 0.76255 1.19661 1.20093 1.20292 1.22864 0.86019 0.95886 1.00179 1.74295 1.00566 1.19857 1.21038 1.74415 1.13463 1.14293 1.15291 1.22888 0.88287 1.00095 0.90400 1.64406 1.03459 1.39859 0.96447 1.22794 0.91259 1.02830 0.95244 1.90916 1.90941 1.31259 1.13201 1.23285 1.02194 0.93493 0.89237 0.86799 0.88751 0.92605 0.91000 0.89276 0.87757 0.85725 0.77538 0.93081 0.95625 0.92847 0.79098 0.88142 0.86448 0.93736 0.92350 0.86080 0.91324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.18 13.82 67.78 0.94 -2.24 16 2 C -0.16 -2.92 5.63 -16.49 -0.09 -3.02 16 3 C -0.11 -1.55 9.66 71.24 0.69 -0.86 16 4 C 0.13 2.62 5.86 85.63 0.50 3.12 16 5 N -0.46 -12.39 2.82 -520.60 -1.47 -13.86 16 6 C 0.29 9.69 7.90 136.30 1.08 10.77 16 7 C -0.20 -6.89 6.04 -20.39 -0.12 -7.01 16 8 C 0.06 1.93 9.06 85.55 0.78 2.71 16 9 N -0.30 -12.81 12.36 -56.37 -0.70 -13.51 16 10 N -0.34 -14.78 3.66 -350.78 -1.28 -16.06 16 11 C 0.25 12.64 5.57 85.63 0.48 13.12 16 12 C -0.62 -34.47 9.23 25.60 0.24 -34.24 16 13 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 14 C -0.02 -0.93 5.46 84.65 0.46 -0.47 16 15 N -0.92 -53.31 13.65 21.45 0.29 -53.01 16 16 Si 1.12 49.23 29.90 68.60 2.05 51.28 16 17 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 18 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 19 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 20 C 0.10 3.98 11.41 83.86 0.96 4.93 16 21 N -0.32 -11.82 12.22 -50.77 -0.62 -12.44 16 22 N -0.33 -11.08 11.29 -57.89 -0.65 -11.73 16 23 C 0.34 9.51 7.69 260.02 2.00 11.52 16 24 N -0.27 -5.56 5.11 -369.08 -1.89 -7.45 16 25 C 0.03 0.42 9.51 127.69 1.21 1.64 16 26 O -0.26 -4.69 9.46 -50.18 -0.47 -5.16 16 27 C 0.01 0.12 10.72 113.37 1.22 1.34 16 28 H 0.11 2.05 7.85 -2.91 -0.02 2.03 16 29 H 0.09 2.17 5.32 -2.91 -0.02 2.16 16 30 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.07 0.91 7.79 -2.39 -0.02 0.89 16 32 H 0.09 0.82 6.45 -2.39 -0.02 0.81 16 33 H 0.10 1.94 4.79 -2.39 -0.01 1.93 16 34 H 0.12 1.98 4.40 -2.39 -0.01 1.97 16 35 H 0.21 5.16 5.10 -2.91 -0.01 5.14 16 36 H 0.05 2.48 7.93 -2.39 -0.02 2.46 16 37 H 0.03 1.33 8.01 -2.39 -0.02 1.31 16 38 H 0.26 14.91 7.22 -92.70 -0.67 14.24 16 39 H 0.19 6.59 8.06 -2.91 -0.02 6.56 16 40 H 0.10 1.71 8.03 -2.39 -0.02 1.69 16 41 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.06 0.47 4.80 -2.39 -0.01 0.45 16 44 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.07 0.44 8.14 -2.39 -0.02 0.43 16 Total: -1.00 -71.69 373.64 6.72 -64.97 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: 1.13 Total: 15.67 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: 10.33 Total: 1.30 kcal Atomic # 7 Polarization: -121.74 SS G_CDS: -6.31 Total: -128.05 kcal Atomic # 8 Polarization: -4.69 SS G_CDS: -0.47 Total: -5.16 kcal Atomic # 14 Polarization: 49.23 SS G_CDS: 2.05 Total: 51.28 kcal Total: -71.69 6.72 -64.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341723075.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 239.884 kcal (2) G-P(sol) polarization free energy of solvation -71.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 168.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 174.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds