Wall clock time and date at job start Tue Mar 31 2020 18:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50696 * 119.99971 * 2 1 4 4 N 1.46498 * 109.47431 * 240.00199 * 3 2 1 5 5 C 1.37541 * 127.17548 * 265.21625 * 4 3 2 6 6 C 1.47836 * 126.48356 * 0.02562 * 5 4 3 7 7 C 1.35572 * 126.34436 * 179.71359 * 6 5 4 8 8 O 1.34976 * 107.11947 * 179.87568 * 7 6 5 9 9 C 1.34209 * 108.13126 * 0.39149 * 8 7 6 10 10 N 1.38104 * 125.50331 * 179.79210 * 9 8 7 11 11 C 1.46501 * 120.00387 * 359.95174 * 10 9 8 12 12 N 1.30886 * 108.99279 * 359.75455 * 9 8 7 13 13 N 1.31280 * 107.03492 * 179.89569 * 5 4 3 14 14 N 1.28505 * 109.95430 * 0.37353 * 13 5 4 15 15 C 1.31251 * 110.11412 * 359.76373 * 14 13 5 16 16 N 1.38532 * 126.37796 * 180.02562 * 15 14 13 17 17 C 1.46902 * 110.99884 * 306.86705 * 16 15 14 18 18 C 1.46901 * 110.99999 * 70.82109 * 16 15 14 19 19 H 1.09000 * 109.46986 * 54.99899 * 18 16 15 20 20 C 1.52999 * 109.47023 * 295.00062 * 18 16 15 21 21 C 1.50701 * 109.47296 * 175.00359 * 18 16 15 22 22 H 1.08004 * 119.99570 * 359.97438 * 21 18 16 23 23 C 1.37879 * 120.00173 * 180.02562 * 21 18 16 24 24 N 1.31507 * 119.99695 * 359.97438 * 23 21 18 25 25 Si 1.86797 * 119.99700 * 179.97438 * 23 21 18 26 26 H 1.48496 * 109.47490 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.46747 * 120.00229 * 25 23 21 28 28 H 1.48503 * 109.47003 * 239.99653 * 25 23 21 29 29 H 1.08006 * 119.99985 * 180.02562 * 1 2 3 30 30 H 1.08000 * 120.00091 * 0.02562 * 1 2 3 31 31 H 1.08004 * 119.99779 * 179.72949 * 2 1 3 32 32 H 1.09008 * 109.46916 * 0.02562 * 3 2 1 33 33 H 1.09004 * 109.47054 * 120.00006 * 3 2 1 34 34 H 1.07997 * 126.44207 * 0.02562 * 7 6 5 35 35 H 0.97006 * 119.99919 * 179.97438 * 10 9 8 36 36 H 1.08997 * 109.47267 * 300.00438 * 11 10 9 37 37 H 1.09007 * 109.46643 * 60.00573 * 11 10 9 38 38 H 1.09004 * 109.47117 * 179.97438 * 11 10 9 39 39 H 1.09001 * 109.47044 * 64.09495 * 17 16 15 40 40 H 1.08993 * 109.47179 * 184.09094 * 17 16 15 41 41 H 1.08998 * 109.47385 * 304.10178 * 17 16 15 42 42 H 1.09008 * 109.47129 * 60.00204 * 20 18 16 43 43 H 1.09002 * 109.47001 * 180.02562 * 20 18 16 44 44 H 1.09000 * 109.47379 * 300.00239 * 20 18 16 45 45 H 0.97003 * 120.00231 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9058 1.3828 -1.1962 5 6 4.2325 1.0362 -1.3023 6 6 5.0923 0.5079 -0.2219 7 6 6.3986 0.1621 -0.3311 8 8 6.7990 -0.2668 0.8845 9 6 5.7512 -0.1920 1.7198 10 7 5.7623 -0.5475 3.0542 11 6 6.9919 -1.0570 3.6664 12 7 4.7173 0.2731 1.0656 13 7 4.5904 1.2606 -2.5454 14 7 3.5942 1.7245 -3.2116 15 6 2.5387 1.8201 -2.4373 16 7 1.2855 2.2785 -2.8095 17 6 1.3755 3.6005 -3.4438 18 6 0.6135 1.3157 -3.6923 19 1 0.5769 0.3409 -3.2058 20 6 1.3889 1.2011 -5.0062 21 6 -0.7890 1.7884 -3.9763 22 1 -1.1455 2.7117 -3.5439 23 6 -1.6172 1.0419 -4.7873 24 7 -1.1831 -0.0825 -5.3134 25 14 -3.3558 1.6276 -5.1387 26 1 -3.5975 2.9119 -4.4335 27 1 -3.5250 1.8267 -6.6007 28 1 -4.3268 0.6101 -4.6621 29 1 -0.5400 -0.9354 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0044 32 1 1.3551 2.1336 0.0005 33 1 2.6902 1.3628 0.8900 34 1 7.0055 0.2211 -1.2224 35 1 4.9558 -0.4603 3.5862 36 1 7.3064 -1.9637 3.1497 37 1 7.7758 -0.3036 3.5881 38 1 6.8085 -1.2820 4.7171 39 1 1.9413 3.5203 -4.3720 40 1 0.3728 3.9686 -3.6602 41 1 1.8795 4.2933 -2.7699 42 1 2.4034 0.8591 -4.8008 43 1 0.8900 0.4870 -5.6614 44 1 1.4257 2.1758 -5.4927 45 1 -1.7656 -0.6076 -5.8843 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351562068.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:45 Heat of formation + Delta-G solvation = 164.180803 kcal Electronic energy + Delta-G solvation = -29111.743474 eV Core-core repulsion = 25169.732045 eV Total energy + Delta-G solvation = -3942.011429 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.25674 -42.30361 -37.19826 -36.36789 -35.78653 -34.79968 -32.84372 -32.24646 -30.78597 -28.94706 -28.13854 -26.59359 -26.28237 -25.18576 -25.15404 -23.59251 -22.25625 -21.29902 -20.54277 -19.71924 -19.20345 -18.18389 -17.05096 -16.95562 -16.41265 -16.08908 -15.79570 -15.76891 -15.17790 -14.79716 -14.60179 -14.28398 -14.19167 -13.67514 -13.31927 -13.26055 -12.95603 -12.80672 -12.27566 -12.04065 -11.70100 -11.48387 -11.27641 -11.20725 -11.16541 -10.94183 -10.82422 -10.66177 -10.62311 -10.53366 -10.19034 -10.09431 -9.91683 -9.61445 -9.17994 -8.86332 -8.65925 -8.42825 -7.85705 -7.61535 -6.04745 -4.10549 1.23983 1.93460 2.04655 2.28664 2.86020 2.93834 3.14892 3.27789 3.35965 3.39399 3.52337 4.19828 4.37281 4.61693 4.74646 4.81264 4.95169 5.09627 5.17170 5.19217 5.27404 5.29320 5.52403 5.61416 5.70246 5.79945 5.92345 5.95427 6.16857 6.21420 6.39696 6.41371 6.47801 6.63506 6.87264 6.88060 6.92191 6.96050 7.08091 7.11369 7.19801 7.56428 7.68458 7.74140 7.78567 7.96551 8.28404 8.49635 8.92762 9.18790 9.53939 11.02091 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.020758 B = 0.003129 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.523007 B = 8946.081627 C = 9635.539888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.181 4.181 3 C 0.147 3.853 4 N -0.449 5.449 5 C 0.227 3.773 6 C 0.097 3.903 7 C -0.051 4.051 8 O -0.220 6.220 9 C 0.461 3.539 10 N -0.689 5.689 11 C 0.095 3.905 12 N -0.528 5.528 13 N -0.273 5.273 14 N -0.310 5.310 15 C 0.389 3.611 16 N -0.468 5.468 17 C 0.046 3.954 18 C 0.227 3.773 19 H 0.038 0.962 20 C -0.174 4.174 21 C -0.504 4.504 22 H 0.066 0.934 23 C 0.062 3.938 24 N -0.888 5.888 25 Si 0.899 3.101 26 H -0.272 1.272 27 H -0.284 1.284 28 H -0.285 1.285 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.096 0.904 33 H 0.110 0.890 34 H 0.229 0.771 35 H 0.431 0.569 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.087 0.913 39 H 0.044 0.956 40 H 0.087 0.913 41 H 0.043 0.957 42 H 0.032 0.968 43 H 0.086 0.914 44 H 0.033 0.967 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.050 -0.898 18.311 22.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.200 4.200 3 C 0.025 3.975 4 N -0.141 5.141 5 C -0.038 4.038 6 C -0.022 4.022 7 C -0.126 4.126 8 O -0.107 6.107 9 C 0.161 3.839 10 N -0.340 5.340 11 C -0.050 4.050 12 N -0.269 5.269 13 N -0.117 5.117 14 N -0.155 5.155 15 C 0.034 3.966 16 N -0.195 5.195 17 C -0.102 4.102 18 C 0.122 3.878 19 H 0.056 0.944 20 C -0.234 4.234 21 C -0.543 4.543 22 H 0.084 0.916 23 C -0.140 4.140 24 N -0.527 5.527 25 Si 0.726 3.274 26 H -0.197 1.197 27 H -0.211 1.211 28 H -0.211 1.211 29 H 0.118 0.882 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.115 0.885 33 H 0.128 0.872 34 H 0.245 0.755 35 H 0.271 0.729 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.105 0.895 39 H 0.062 0.938 40 H 0.106 0.894 41 H 0.062 0.938 42 H 0.051 0.949 43 H 0.105 0.895 44 H 0.052 0.948 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 13.158 -0.864 17.655 22.036 hybrid contribution -1.059 -0.193 0.092 1.080 sum 12.099 -1.057 17.747 21.505 Atomic orbital electron populations 1.23924 0.95487 1.02473 0.95867 1.22795 0.96058 0.97402 1.03774 1.20963 0.93661 0.97457 0.85398 1.46411 1.09191 1.47673 1.10795 1.20934 0.82364 1.06738 0.93744 1.18083 0.91123 1.04080 0.88923 1.24596 0.96029 1.05966 0.85964 1.84377 1.38252 1.68575 1.19457 1.21367 0.80967 0.94989 0.86626 1.42939 1.15670 1.72828 1.02591 1.21675 0.85731 0.99150 0.98397 1.71037 1.26321 1.25583 1.03965 1.74240 1.22665 1.15219 0.99612 1.74744 0.96932 1.19569 1.24230 1.22879 0.93866 0.97847 0.82053 1.59423 1.08484 1.05483 1.46085 1.22235 1.02941 0.87610 0.97387 1.19387 0.91888 0.89517 0.86978 0.94399 1.22451 0.98161 1.01387 1.01368 1.21027 0.95782 1.08200 1.29250 0.91621 1.24897 0.98557 0.94879 0.95641 1.69921 1.36068 1.13892 1.32790 0.86433 0.84202 0.78728 0.77988 1.19674 1.21059 1.21085 0.88243 0.87721 0.87688 0.88528 0.87195 0.75502 0.72871 0.92230 0.92257 0.89469 0.93777 0.89422 0.93841 0.94887 0.89521 0.94831 0.92911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 14.32 29.01 0.42 -1.76 16 2 C -0.18 -2.92 9.85 -36.03 -0.35 -3.28 16 3 C 0.15 2.37 6.37 -5.20 -0.03 2.34 16 4 N -0.45 -8.60 2.82 -115.92 -0.33 -8.93 16 5 C 0.23 4.24 7.93 -153.78 -1.22 3.03 16 6 C 0.10 1.49 6.95 -82.98 -0.58 0.92 16 7 C -0.05 -0.65 12.12 29.78 0.36 -0.29 16 8 O -0.22 -2.54 10.45 4.08 0.04 -2.50 16 9 C 0.46 5.23 8.96 -87.18 -0.78 4.45 16 10 N -0.69 -4.95 5.85 -69.16 -0.40 -5.36 16 11 C 0.10 0.40 11.07 59.85 0.66 1.06 16 12 N -0.53 -7.34 9.52 -10.95 -0.10 -7.45 16 13 N -0.27 -5.67 12.20 32.59 0.40 -5.27 16 14 N -0.31 -7.02 9.87 30.34 0.30 -6.72 16 15 C 0.39 8.44 6.19 -318.67 -1.97 6.47 16 16 N -0.47 -10.41 4.77 -176.04 -0.84 -11.25 16 17 C 0.05 0.93 8.73 60.07 0.52 1.45 16 18 C 0.23 5.77 2.32 -68.86 -0.16 5.61 16 19 H 0.04 1.09 8.11 -51.93 -0.42 0.67 16 20 C -0.17 -4.50 8.19 37.16 0.30 -4.20 16 21 C -0.50 -13.34 7.94 -34.44 -0.27 -13.61 16 22 H 0.07 1.71 6.75 -52.48 -0.35 1.35 16 23 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 24 N -0.89 -25.14 11.32 55.43 0.63 -24.51 16 25 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 28 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 29 H 0.10 1.45 8.06 -52.48 -0.42 1.02 16 30 H 0.10 1.61 7.83 -52.49 -0.41 1.20 16 31 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 32 H 0.10 1.52 7.78 -51.92 -0.40 1.12 16 33 H 0.11 1.61 6.39 -51.93 -0.33 1.28 16 34 H 0.23 2.31 8.06 -52.49 -0.42 1.88 16 35 H 0.43 2.38 8.95 -40.82 -0.37 2.01 16 36 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 37 H 0.06 0.25 8.14 -51.92 -0.42 -0.17 16 38 H 0.09 0.13 8.14 -51.93 -0.42 -0.30 16 39 H 0.04 0.93 6.23 -51.93 -0.32 0.60 16 40 H 0.09 1.76 6.53 -51.93 -0.34 1.42 16 41 H 0.04 0.78 8.12 -51.93 -0.42 0.36 16 42 H 0.03 0.84 5.95 -51.92 -0.31 0.53 16 43 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 44 H 0.03 0.83 6.38 -51.93 -0.33 0.50 16 45 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 375.93 15.07 5.67 5.67 Total: -1.00 -32.58 375.93 -8.86 -41.45 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -6.00 Total: 5.27 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -3.20 Total: 3.77 kcal Atomic # 7 Polarization: -69.13 SS G_CDS: -0.35 Total: -69.48 kcal Atomic # 8 Polarization: -2.54 SS G_CDS: 0.04 Total: -2.50 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.58 -8.86 -41.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351562068.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.628 kcal (2) G-P(sol) polarization free energy of solvation -32.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 173.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds