Wall clock time and date at job start Tue Mar 31 2020 18:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50696 * 119.99971 * 2 1 4 4 N 1.46498 * 109.47431 * 240.00199 * 3 2 1 5 5 C 1.37541 * 127.17548 * 265.21625 * 4 3 2 6 6 C 1.47836 * 126.48356 * 0.02562 * 5 4 3 7 7 C 1.35572 * 126.34436 * 179.71359 * 6 5 4 8 8 O 1.34976 * 107.11947 * 179.87568 * 7 6 5 9 9 C 1.34209 * 108.13126 * 0.39149 * 8 7 6 10 10 N 1.38104 * 125.50331 * 179.79210 * 9 8 7 11 11 C 1.46501 * 120.00387 * 359.95174 * 10 9 8 12 12 N 1.30886 * 108.99279 * 359.75455 * 9 8 7 13 13 N 1.31280 * 107.03492 * 179.89569 * 5 4 3 14 14 N 1.28505 * 109.95430 * 0.37353 * 13 5 4 15 15 C 1.31251 * 110.11412 * 359.76373 * 14 13 5 16 16 N 1.38532 * 126.37796 * 180.02562 * 15 14 13 17 17 C 1.46902 * 110.99884 * 306.86705 * 16 15 14 18 18 C 1.46901 * 110.99999 * 70.82109 * 16 15 14 19 19 H 1.09000 * 109.46986 * 54.99899 * 18 16 15 20 20 C 1.52999 * 109.47023 * 295.00062 * 18 16 15 21 21 C 1.50701 * 109.47296 * 175.00359 * 18 16 15 22 22 H 1.08004 * 119.99570 * 359.97438 * 21 18 16 23 23 C 1.37879 * 120.00173 * 180.02562 * 21 18 16 24 24 N 1.31507 * 119.99695 * 359.97438 * 23 21 18 25 25 Si 1.86797 * 119.99700 * 179.97438 * 23 21 18 26 26 H 1.48496 * 109.47490 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.46747 * 120.00229 * 25 23 21 28 28 H 1.48503 * 109.47003 * 239.99653 * 25 23 21 29 29 H 1.08006 * 119.99985 * 180.02562 * 1 2 3 30 30 H 1.08000 * 120.00091 * 0.02562 * 1 2 3 31 31 H 1.08004 * 119.99779 * 179.72949 * 2 1 3 32 32 H 1.09008 * 109.46916 * 0.02562 * 3 2 1 33 33 H 1.09004 * 109.47054 * 120.00006 * 3 2 1 34 34 H 1.07997 * 126.44207 * 0.02562 * 7 6 5 35 35 H 0.97006 * 119.99919 * 179.97438 * 10 9 8 36 36 H 1.08997 * 109.47267 * 300.00438 * 11 10 9 37 37 H 1.09007 * 109.46643 * 60.00573 * 11 10 9 38 38 H 1.09004 * 109.47117 * 179.97438 * 11 10 9 39 39 H 1.09001 * 109.47044 * 64.09495 * 17 16 15 40 40 H 1.08993 * 109.47179 * 184.09094 * 17 16 15 41 41 H 1.08998 * 109.47385 * 304.10178 * 17 16 15 42 42 H 1.09008 * 109.47129 * 60.00204 * 20 18 16 43 43 H 1.09002 * 109.47001 * 180.02562 * 20 18 16 44 44 H 1.09000 * 109.47379 * 300.00239 * 20 18 16 45 45 H 0.97003 * 120.00231 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9058 1.3828 -1.1962 5 6 4.2325 1.0362 -1.3023 6 6 5.0923 0.5079 -0.2219 7 6 6.3986 0.1621 -0.3311 8 8 6.7990 -0.2668 0.8845 9 6 5.7512 -0.1920 1.7198 10 7 5.7623 -0.5475 3.0542 11 6 6.9919 -1.0570 3.6664 12 7 4.7173 0.2731 1.0656 13 7 4.5904 1.2606 -2.5454 14 7 3.5942 1.7245 -3.2116 15 6 2.5387 1.8201 -2.4373 16 7 1.2855 2.2785 -2.8095 17 6 1.3755 3.6005 -3.4438 18 6 0.6135 1.3157 -3.6923 19 1 0.5769 0.3409 -3.2058 20 6 1.3889 1.2011 -5.0062 21 6 -0.7890 1.7884 -3.9763 22 1 -1.1455 2.7117 -3.5439 23 6 -1.6172 1.0419 -4.7873 24 7 -1.1831 -0.0825 -5.3134 25 14 -3.3558 1.6276 -5.1387 26 1 -3.5975 2.9119 -4.4335 27 1 -3.5250 1.8267 -6.6007 28 1 -4.3268 0.6101 -4.6621 29 1 -0.5400 -0.9354 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0044 32 1 1.3551 2.1336 0.0005 33 1 2.6902 1.3628 0.8900 34 1 7.0055 0.2211 -1.2224 35 1 4.9558 -0.4603 3.5862 36 1 7.3064 -1.9637 3.1497 37 1 7.7758 -0.3036 3.5881 38 1 6.8085 -1.2820 4.7171 39 1 1.9413 3.5203 -4.3720 40 1 0.3728 3.9686 -3.6602 41 1 1.8795 4.2933 -2.7699 42 1 2.4034 0.8591 -4.8008 43 1 0.8900 0.4870 -5.6614 44 1 1.4257 2.1758 -5.4927 45 1 -1.7656 -0.6076 -5.8843 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351562068.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:44 Heat of formation + Delta-G solvation = 142.858529 kcal Electronic energy + Delta-G solvation = -29112.668077 eV Core-core repulsion = 25169.732045 eV Total energy + Delta-G solvation = -3942.936032 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.28920 -43.78846 -39.00428 -37.15696 -37.00338 -35.86160 -34.81314 -33.65673 -32.06922 -30.74471 -29.50199 -27.92012 -27.27465 -26.99801 -26.74116 -24.85847 -23.46468 -22.84012 -21.85232 -21.06834 -20.75048 -19.12501 -18.41963 -18.10190 -17.92328 -17.51360 -17.26798 -16.88813 -16.62235 -16.43667 -15.88083 -15.47691 -15.44318 -14.87416 -14.73146 -14.51520 -14.36340 -14.16069 -13.43386 -13.32097 -13.09477 -13.07297 -12.92916 -12.73474 -12.72990 -12.57586 -12.51656 -12.41867 -12.10632 -12.02509 -11.78997 -11.58321 -11.50122 -11.06682 -10.89013 -10.55525 -10.43695 -10.00192 -9.46388 -8.80449 -8.11128 -6.24051 0.04373 0.84826 0.98700 1.15392 1.44741 1.45765 1.48218 1.58688 1.62773 2.12625 2.17403 2.44439 3.02586 3.19087 3.22513 3.57191 3.84214 3.92106 4.09324 4.20439 4.27180 4.36013 4.48274 4.55261 4.63610 4.67333 4.68484 4.72487 4.75227 4.88404 4.93054 4.95236 5.00054 5.04317 5.10193 5.11508 5.39659 5.59085 5.61039 5.65427 5.70372 5.72725 5.83507 6.01396 6.21103 6.23115 6.61760 6.85504 6.90227 7.44714 7.61002 8.96053 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.020758 B = 0.003129 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.523007 B = 8946.081627 C = 9635.539888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.188 4.188 3 C 0.150 3.850 4 N -0.450 5.450 5 C 0.246 3.754 6 C 0.057 3.943 7 C -0.024 4.024 8 O -0.214 6.214 9 C 0.465 3.535 10 N -0.674 5.674 11 C 0.089 3.911 12 N -0.551 5.551 13 N -0.299 5.299 14 N -0.336 5.336 15 C 0.367 3.633 16 N -0.464 5.464 17 C 0.050 3.950 18 C 0.241 3.759 19 H -0.001 1.001 20 C -0.158 4.158 21 C -0.511 4.511 22 H 0.072 0.928 23 C 0.015 3.985 24 N -0.921 5.921 25 Si 0.965 3.035 26 H -0.260 1.260 27 H -0.284 1.284 28 H -0.283 1.283 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.126 0.874 34 H 0.250 0.750 35 H 0.439 0.561 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.120 0.880 39 H 0.031 0.969 40 H 0.089 0.911 41 H 0.066 0.934 42 H 0.027 0.973 43 H 0.061 0.939 44 H 0.036 0.964 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.428 -0.546 20.529 24.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.207 4.207 3 C 0.029 3.971 4 N -0.141 5.141 5 C -0.019 4.019 6 C -0.061 4.061 7 C -0.100 4.100 8 O -0.101 6.101 9 C 0.164 3.836 10 N -0.327 5.327 11 C -0.054 4.054 12 N -0.293 5.293 13 N -0.142 5.142 14 N -0.180 5.180 15 C 0.011 3.989 16 N -0.189 5.189 17 C -0.098 4.098 18 C 0.135 3.865 19 H 0.017 0.983 20 C -0.217 4.217 21 C -0.549 4.549 22 H 0.090 0.910 23 C -0.184 4.184 24 N -0.560 5.560 25 Si 0.791 3.209 26 H -0.184 1.184 27 H -0.211 1.211 28 H -0.209 1.209 29 H 0.126 0.874 30 H 0.125 0.875 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.143 0.857 34 H 0.266 0.734 35 H 0.281 0.719 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.138 0.862 39 H 0.050 0.950 40 H 0.108 0.892 41 H 0.085 0.915 42 H 0.046 0.954 43 H 0.080 0.920 44 H 0.055 0.945 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 13.548 -0.502 19.922 24.097 hybrid contribution -1.001 -0.397 -0.419 1.155 sum 12.547 -0.899 19.503 23.208 Atomic orbital electron populations 1.24053 0.95400 1.03051 0.94986 1.22755 0.96233 0.97181 1.04540 1.21113 0.93691 0.97506 0.84814 1.46576 1.09671 1.47068 1.10759 1.21482 0.82345 1.04248 0.93874 1.18028 0.91843 1.06941 0.89245 1.24991 0.95129 1.03185 0.86688 1.84414 1.38148 1.68436 1.19117 1.21752 0.80260 0.93851 0.87761 1.43301 1.17196 1.71317 1.00841 1.21949 0.84525 0.98947 1.00004 1.70949 1.27453 1.27387 1.03492 1.74154 1.22450 1.16939 1.00629 1.74611 0.97668 1.20310 1.25445 1.22810 0.93537 0.99488 0.83080 1.59294 1.08999 1.05398 1.45243 1.22249 1.03081 0.87090 0.97331 1.19005 0.92203 0.88623 0.86637 0.98295 1.22259 0.97548 1.00610 1.01304 1.21257 0.96211 1.08320 1.29155 0.91034 1.25710 1.02458 0.94858 0.95397 1.70064 1.37491 1.15075 1.33406 0.85390 0.79267 0.78614 0.77652 1.18394 1.21051 1.20886 0.87353 0.87482 0.88345 0.88189 0.85660 0.73427 0.71865 0.92298 0.92058 0.86163 0.95010 0.89233 0.91528 0.95436 0.92017 0.94525 0.92938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.24 14.32 67.78 0.97 -3.26 16 2 C -0.19 -6.07 9.85 25.64 0.25 -5.81 16 3 C 0.15 4.77 6.37 85.63 0.55 5.32 16 4 N -0.45 -17.33 2.82 -520.67 -1.47 -18.80 16 5 C 0.25 9.23 7.93 136.21 1.08 10.31 16 6 C 0.06 1.72 6.95 40.40 0.28 2.00 16 7 C -0.02 -0.58 12.12 67.20 0.81 0.24 16 8 O -0.21 -4.49 10.45 -8.31 -0.09 -4.57 16 9 C 0.46 9.60 8.96 179.15 1.60 11.20 16 10 N -0.67 -7.88 5.85 -483.21 -2.83 -10.71 16 11 C 0.09 0.46 11.07 127.77 1.41 1.87 16 12 N -0.55 -14.63 9.52 -302.92 -2.89 -17.51 16 13 N -0.30 -12.56 12.20 -50.81 -0.62 -13.18 16 14 N -0.34 -15.54 9.87 -57.91 -0.57 -16.12 16 15 C 0.37 16.20 6.19 260.04 1.61 17.81 16 16 N -0.46 -20.81 4.77 -710.86 -3.39 -24.20 16 17 C 0.05 2.00 8.73 127.69 1.11 3.11 16 18 C 0.24 12.57 2.32 44.17 0.10 12.67 16 19 H 0.00 -0.05 8.11 -2.39 -0.02 -0.07 16 20 C -0.16 -8.42 8.19 71.98 0.59 -7.83 16 21 C -0.51 -27.15 7.94 25.60 0.20 -26.94 16 22 H 0.07 3.66 6.75 -2.91 -0.02 3.64 16 23 C 0.01 0.80 5.30 84.66 0.45 1.25 16 24 N -0.92 -53.08 11.32 21.45 0.24 -52.83 16 25 Si 0.97 42.56 29.54 68.60 2.03 44.58 16 26 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 27 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 28 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 29 H 0.11 3.11 8.06 -2.91 -0.02 3.09 16 30 H 0.11 3.25 7.83 -2.91 -0.02 3.22 16 31 H 0.10 3.29 8.06 -2.91 -0.02 3.27 16 32 H 0.10 3.10 7.78 -2.38 -0.02 3.08 16 33 H 0.13 3.58 6.39 -2.38 -0.02 3.57 16 34 H 0.25 4.57 8.06 -2.91 -0.02 4.55 16 35 H 0.44 3.67 8.95 -92.70 -0.83 2.84 16 36 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.06 0.34 8.14 -2.38 -0.02 0.32 16 38 H 0.12 -0.13 8.14 -2.39 -0.02 -0.15 16 39 H 0.03 1.34 6.23 -2.39 -0.01 1.33 16 40 H 0.09 3.53 6.53 -2.39 -0.02 3.51 16 41 H 0.07 2.35 8.12 -2.39 -0.02 2.33 16 42 H 0.03 1.45 5.95 -2.38 -0.01 1.44 16 43 H 0.06 3.58 6.07 -2.39 -0.01 3.57 16 44 H 0.04 1.86 6.38 -2.39 -0.02 1.85 16 45 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -71.33 375.93 1.65 -69.68 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: 0.20 Total: 21.73 kcal Atomic # 6 Polarization: 10.91 SS G_CDS: 11.03 Total: 21.94 kcal Atomic # 7 Polarization: -141.83 SS G_CDS: -11.52 Total: -153.35 kcal Atomic # 8 Polarization: -4.49 SS G_CDS: -0.09 Total: -4.57 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.58 kcal Total: -71.33 1.65 -69.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351562068.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.537 kcal (2) G-P(sol) polarization free energy of solvation -71.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds