Wall clock time and date at job start Tue Mar 31 2020 17:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38040 * 126.29529 * 2 1 4 4 C 1.47430 * 126.41454 * 359.97438 * 3 2 1 5 5 O 1.21608 * 119.99956 * 0.02562 * 4 3 2 6 6 N 1.34778 * 120.00423 * 180.02562 * 4 3 2 7 7 C 1.46492 * 120.00172 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.47466 * 180.02562 * 7 6 4 9 9 H 1.08999 * 109.46462 * 305.00071 * 8 7 6 10 10 C 1.52995 * 109.47110 * 64.99556 * 8 7 6 11 11 C 1.50697 * 109.47401 * 184.99899 * 8 7 6 12 12 N 1.30519 * 126.34476 * 299.99591 * 11 8 7 13 13 N 1.28600 * 109.66808 * 179.73098 * 12 11 8 14 14 C 1.30516 * 109.67696 * 0.44987 * 13 12 11 15 15 N 1.35495 * 107.30468 * 359.55808 * 14 13 12 16 16 C 1.46499 * 126.97946 * 180.26092 * 15 14 13 17 17 C 1.41287 * 107.17384 * 180.24805 * 3 2 1 18 18 N 1.30449 * 108.02346 * 359.61313 * 17 3 2 19 19 N 1.34262 * 126.29095 * 180.02562 * 2 1 3 20 20 C 1.46501 * 125.75247 * 359.95421 * 19 2 1 21 21 C 1.50709 * 109.46802 * 90.00568 * 20 19 2 22 22 H 1.07998 * 119.99953 * 359.97438 * 21 20 19 23 23 C 1.37880 * 119.99938 * 180.02562 * 21 20 19 24 24 N 1.31516 * 119.99935 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99847 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47146 * 59.99887 * 25 23 21 27 27 H 1.48494 * 109.46895 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47175 * 299.99766 * 25 23 21 29 29 H 1.09004 * 109.46937 * 89.98048 * 1 2 3 30 30 H 1.08995 * 109.47413 * 209.97886 * 1 2 3 31 31 H 1.09000 * 109.47442 * 329.98036 * 1 2 3 32 32 H 0.97003 * 119.99551 * 359.97438 * 6 4 3 33 33 H 1.08999 * 109.47832 * 59.99610 * 7 6 4 34 34 H 1.09002 * 109.47450 * 299.99888 * 7 6 4 35 35 H 1.09002 * 109.47291 * 60.00396 * 10 8 7 36 36 H 1.08994 * 109.47327 * 180.02562 * 10 8 7 37 37 H 1.09003 * 109.47387 * 300.00066 * 10 8 7 38 38 H 1.08002 * 126.35125 * 179.82818 * 14 13 12 39 39 H 1.09004 * 109.47293 * 90.03308 * 16 15 14 40 40 H 1.09007 * 109.47309 * 210.02845 * 16 15 14 41 41 H 1.09000 * 109.47123 * 330.02746 * 16 15 14 42 42 H 1.08000 * 125.99240 * 179.73972 * 17 3 2 43 43 H 1.08997 * 109.47209 * 210.00023 * 20 19 2 44 44 H 1.08998 * 109.47422 * 330.00490 * 20 19 2 45 45 H 0.96994 * 119.99833 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8859 2.5202 -0.0005 5 8 0.6996 2.7878 -0.0006 6 7 2.8000 3.5107 -0.0010 7 6 2.3645 4.9094 -0.0009 8 6 3.5902 5.8252 -0.0022 9 1 4.2347 5.5706 0.8392 10 6 4.3626 5.6417 -1.3100 11 6 3.1456 7.2597 0.1217 12 7 2.3677 7.9026 -0.7060 13 7 2.1926 9.1065 -0.2889 14 6 2.8585 9.2890 0.8186 15 7 3.4792 8.1211 1.1129 16 6 4.3370 7.8458 2.2681 17 6 3.6590 0.6498 -0.0058 18 7 3.6340 -0.6545 -0.0007 19 7 2.3016 -1.0822 -0.0005 20 6 1.8500 -2.4758 -0.0002 21 6 1.6943 -2.9537 -1.4210 22 1 1.9099 -2.2860 -2.2420 23 6 1.2758 -4.2431 -1.6727 24 7 1.0128 -5.0561 -0.6729 25 14 1.0822 -4.8352 -3.4337 26 1 2.3877 -4.7385 -4.1348 27 1 0.6245 -6.2479 -3.4335 28 1 0.0810 -3.9901 -4.1329 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3634 -0.8901 0.5135 31 1 -0.3634 0.8898 0.5141 32 1 3.7462 3.2972 -0.0006 33 1 1.7662 5.1037 0.8892 34 1 1.7656 5.1035 -0.8907 35 1 3.7181 5.8962 -2.1514 36 1 5.2360 6.2938 -1.3107 37 1 4.6843 4.6041 -1.3996 38 1 2.9027 10.2006 1.3961 39 1 3.7280 7.4758 3.0930 40 1 5.0790 7.0940 1.9988 41 1 4.8423 8.7624 2.5722 42 1 4.5449 1.2675 -0.0113 43 1 2.5849 -3.0958 0.5132 44 1 0.8916 -2.5471 0.5142 45 1 0.7187 -5.9633 -0.8500 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362939066.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:35 Heat of formation + Delta-G solvation = 81.556581 kcal Electronic energy + Delta-G solvation = -27527.237311 eV Core-core repulsion = 23581.643028 eV Total energy + Delta-G solvation = -3945.594284 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 2.36 seconds Orbital eigenvalues (eV) -44.10602 -42.28673 -40.21105 -37.42844 -35.91678 -35.79666 -34.28766 -33.60101 -32.69738 -30.61979 -29.36991 -28.39888 -28.36473 -27.22696 -25.36602 -24.40327 -23.39751 -22.94282 -21.33158 -21.11465 -20.38852 -18.85637 -18.53075 -17.95291 -17.38584 -16.93141 -16.80079 -16.53850 -16.31331 -16.00473 -15.71206 -15.44826 -15.27385 -14.75571 -14.61444 -14.26234 -14.17583 -14.06297 -13.79685 -13.67021 -13.59541 -13.55515 -13.07640 -12.96485 -12.90096 -12.68538 -12.53401 -12.36630 -12.29473 -12.15568 -11.87025 -11.71097 -11.27209 -11.06295 -10.83672 -10.75144 -10.26370 -10.24195 -10.12468 -9.41634 -8.37179 -6.53298 0.69898 0.84059 1.35372 1.39266 1.40322 1.48170 1.56155 1.69567 1.88290 2.31826 2.36897 2.57434 2.95002 3.26038 3.60318 3.75876 3.76801 3.84825 3.90118 3.92726 4.13739 4.15406 4.25669 4.41388 4.47810 4.53724 4.63116 4.67470 4.74454 4.76353 4.81805 4.83324 4.91045 4.95571 5.06241 5.10145 5.17273 5.19587 5.36980 5.48163 5.50513 5.71721 5.75874 5.98229 6.05602 6.55489 6.64363 6.88198 7.17588 7.38457 7.75871 8.70373 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.026724 B = 0.002065 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.496755 B =13553.176872 C =13674.022213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.143 3.857 3 C -0.329 4.329 4 C 0.605 3.395 5 O -0.586 6.586 6 N -0.708 5.708 7 C 0.143 3.857 8 C -0.001 4.001 9 H 0.132 0.868 10 C -0.142 4.142 11 C 0.179 3.821 12 N -0.335 5.335 13 N -0.354 5.354 14 C 0.161 3.839 15 N -0.471 5.471 16 C 0.058 3.942 17 C 0.083 3.917 18 N -0.336 5.336 19 N -0.338 5.338 20 C 0.267 3.733 21 C -0.555 4.555 22 H 0.052 0.948 23 C 0.023 3.977 24 N -0.916 5.916 25 Si 0.970 3.030 26 H -0.272 1.272 27 H -0.273 1.273 28 H -0.268 1.268 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.416 0.584 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.047 0.953 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.260 0.740 39 H 0.094 0.906 40 H 0.109 0.891 41 H 0.120 0.880 42 H 0.233 0.767 43 H 0.033 0.967 44 H 0.049 0.951 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.325 25.926 8.573 29.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.007 3.993 3 C -0.344 4.344 4 C 0.395 3.605 5 O -0.468 6.468 6 N -0.361 5.361 7 C 0.018 3.982 8 C -0.021 4.021 9 H 0.150 0.850 10 C -0.200 4.200 11 C -0.091 4.091 12 N -0.175 5.175 13 N -0.193 5.193 14 C -0.127 4.127 15 N -0.161 5.161 16 C -0.082 4.082 17 C -0.104 4.104 18 N -0.155 5.155 19 N -0.115 5.115 20 C 0.149 3.851 21 C -0.593 4.593 22 H 0.070 0.930 23 C -0.178 4.178 24 N -0.554 5.554 25 Si 0.794 3.206 26 H -0.197 1.197 27 H -0.198 1.198 28 H -0.193 1.193 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.119 0.881 32 H 0.254 0.746 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.107 0.893 38 H 0.276 0.724 39 H 0.113 0.887 40 H 0.127 0.873 41 H 0.139 0.861 42 H 0.249 0.751 43 H 0.051 0.949 44 H 0.067 0.933 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.255 24.997 7.488 28.037 hybrid contribution 0.272 -0.228 0.250 0.435 sum 10.527 24.768 7.739 28.003 Atomic orbital electron populations 1.20535 0.86231 1.03932 1.03791 1.21941 0.95820 0.86936 0.94555 1.19890 0.93441 0.92689 1.28376 1.17138 0.84973 0.83919 0.74480 1.90708 1.18373 1.84751 1.52950 1.45361 1.10095 1.04530 1.76127 1.21045 0.95835 0.79542 1.01729 1.19775 0.96387 0.83106 1.02882 0.84996 1.21836 0.99763 1.03782 0.94619 1.24779 0.99510 0.96533 0.88282 1.74171 1.17121 1.00715 1.25486 1.74174 1.22447 1.10619 1.12068 1.27239 0.95091 0.93237 0.97136 1.46471 1.38089 1.10062 1.21460 1.22597 0.94413 1.06370 0.84850 1.24562 0.97534 0.91527 0.96763 1.77094 0.98148 1.14566 1.25727 1.49083 1.03460 1.07654 1.51344 1.19351 0.95284 0.72447 0.98057 1.21366 1.47907 0.98436 0.91622 0.93012 1.25722 0.93879 0.95997 1.02204 1.69984 1.44808 1.07593 1.33027 0.85422 0.78840 0.77640 0.78732 1.19724 1.19804 1.19312 0.90136 0.91097 0.88138 0.74580 0.92586 0.92867 0.93385 0.90960 0.89295 0.72401 0.88732 0.87282 0.86133 0.75112 0.94926 0.93299 0.91678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.23 9.57 71.23 0.68 -2.55 16 2 C 0.14 5.81 7.01 42.14 0.30 6.10 16 3 C -0.33 -11.17 6.13 -20.15 -0.12 -11.30 16 4 C 0.61 18.61 7.81 86.66 0.68 19.29 16 5 O -0.59 -22.33 14.84 -4.06 -0.06 -22.39 16 6 N -0.71 -14.05 5.27 -466.38 -2.46 -16.51 16 7 C 0.14 2.83 5.05 86.38 0.44 3.27 16 8 C 0.00 -0.01 2.78 -11.54 -0.03 -0.04 16 9 H 0.13 0.56 6.89 -2.39 -0.02 0.54 16 10 C -0.14 -1.66 9.05 71.98 0.65 -1.01 16 11 C 0.18 3.08 6.54 137.98 0.90 3.98 16 12 N -0.34 -8.78 12.21 -50.16 -0.61 -9.40 16 13 N -0.35 -8.70 12.21 -59.99 -0.73 -9.43 16 14 C 0.16 2.14 12.74 180.11 2.30 4.43 16 15 N -0.47 -4.95 3.15 -542.06 -1.71 -6.65 16 16 C 0.06 -0.03 10.91 127.77 1.39 1.37 16 17 C 0.08 2.52 11.50 85.65 0.99 3.51 16 18 N -0.34 -13.80 12.50 -56.28 -0.70 -14.50 16 19 N -0.34 -15.33 3.56 -336.70 -1.20 -16.53 16 20 C 0.27 13.69 5.97 85.64 0.51 14.21 16 21 C -0.56 -30.49 9.39 25.60 0.24 -30.25 16 22 H 0.05 2.92 7.81 -2.91 -0.02 2.89 16 23 C 0.02 1.26 5.46 84.66 0.46 1.73 16 24 N -0.92 -51.18 13.29 21.45 0.28 -50.89 16 25 Si 0.97 42.70 29.54 68.60 2.03 44.73 16 26 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 27 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 28 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 29 H 0.08 3.01 8.14 -2.38 -0.02 2.99 16 30 H 0.07 2.61 7.05 -2.39 -0.02 2.59 16 31 H 0.10 3.56 6.50 -2.39 -0.02 3.54 16 32 H 0.42 5.03 6.61 -92.71 -0.61 4.42 16 33 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.09 0.74 7.18 -2.39 -0.02 0.72 16 38 H 0.26 0.67 8.06 -2.91 -0.02 0.64 16 39 H 0.09 -0.14 8.14 -2.38 -0.02 -0.16 16 40 H 0.11 -0.36 7.18 -2.38 -0.02 -0.38 16 41 H 0.12 -0.64 8.14 -2.39 -0.02 -0.66 16 42 H 0.23 3.93 7.50 -2.91 -0.02 3.91 16 43 H 0.03 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.05 2.52 7.02 -2.39 -0.02 2.50 16 45 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -83.25 383.04 4.63 -78.63 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: 0.41 Total: 10.22 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: 9.38 Total: 12.73 kcal Atomic # 7 Polarization: -116.78 SS G_CDS: -7.13 Total: -123.91 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.06 Total: -22.39 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -83.25 4.63 -78.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362939066.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.182 kcal (2) G-P(sol) polarization free energy of solvation -83.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.36 seconds