Wall clock time and date at job start Tue Mar 31 2020 18:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46860 * 2 1 4 4 C 1.50703 * 109.46762 * 119.99516 * 2 1 3 5 5 H 1.08000 * 119.99907 * 119.99655 * 4 2 1 6 6 C 1.37875 * 120.00002 * 300.00392 * 4 2 1 7 7 N 1.31513 * 120.00355 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00000 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47316 * 89.99678 * 8 6 4 10 10 H 1.48506 * 109.47388 * 209.99587 * 8 6 4 11 11 H 1.48497 * 109.47086 * 329.99684 * 8 6 4 12 12 C 1.50692 * 109.47506 * 239.99390 * 2 1 3 13 13 O 1.21277 * 120.00458 * 240.00400 * 12 2 1 14 14 N 1.34785 * 119.99963 * 60.00115 * 12 2 1 15 15 C 1.46495 * 119.99692 * 0.02562 * 14 12 2 16 16 C 1.46491 * 120.00166 * 180.02562 * 14 12 2 17 17 C 1.53001 * 109.47355 * 270.00327 * 16 14 12 18 18 C 1.52994 * 109.47532 * 179.97438 * 17 16 14 19 19 N 1.46492 * 109.47501 * 179.97438 * 18 17 16 20 20 C 1.36319 * 126.28134 * 265.00168 * 19 18 17 21 21 N 1.30139 * 109.98121 * 179.97438 * 20 19 18 22 22 C 1.35474 * 109.43978 * 359.97438 * 21 20 19 23 23 C 1.37203 * 126.28024 * 84.99691 * 19 18 17 24 24 N 1.32892 * 134.91178 * 0.02562 * 23 19 18 25 25 C 1.31651 * 120.63683 * 179.97438 * 24 23 19 26 26 N 1.32037 * 122.46350 * 0.02562 * 25 24 23 27 27 C 1.32914 * 121.19189 * 359.97438 * 26 25 24 28 28 N 1.38395 * 120.76956 * 179.73041 * 27 26 25 29 29 H 1.09000 * 109.47456 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47580 * 300.00571 * 1 2 3 31 31 H 1.09008 * 109.47148 * 60.00276 * 1 2 3 32 32 H 0.97001 * 120.00630 * 180.02562 * 7 6 4 33 33 H 1.09006 * 109.47413 * 270.00235 * 15 14 12 34 34 H 1.09001 * 109.47174 * 30.00118 * 15 14 12 35 35 H 1.09000 * 109.47019 * 150.00087 * 15 14 12 36 36 H 1.08999 * 109.47225 * 149.99653 * 16 14 12 37 37 H 1.08999 * 109.47180 * 29.99963 * 16 14 12 38 38 H 1.08994 * 109.47054 * 59.99452 * 17 16 14 39 39 H 1.08999 * 109.46680 * 299.99943 * 17 16 14 40 40 H 1.09007 * 109.46993 * 59.99679 * 18 17 16 41 41 H 1.09001 * 109.46977 * 300.00250 * 18 17 16 42 42 H 1.08003 * 125.01353 * 0.03470 * 20 19 18 43 43 H 1.07996 * 118.76536 * 179.97438 * 25 24 23 44 44 H 0.97001 * 120.00101 * 0.02562 * 28 27 26 45 45 H 0.97001 * 119.99361 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6531 -1.5885 1.1316 6 6 1.6990 -0.2392 2.4828 7 7 0.9433 0.8303 2.6034 8 14 2.3222 -1.1193 4.0081 9 1 3.6301 -0.5437 4.4121 10 1 1.3441 -0.9486 5.1124 11 1 2.4877 -2.5651 3.7125 12 6 2.0324 -0.7105 -1.2303 13 8 2.7296 -1.6965 -1.1190 14 7 1.7068 -0.2501 -2.4545 15 6 0.8651 0.9413 -2.5890 16 6 2.1947 -0.9411 -3.6506 17 6 3.5428 -0.3494 -4.0672 18 6 4.0527 -1.0714 -5.3160 19 7 5.3431 -0.5044 -5.7153 20 6 5.5415 0.4761 -6.6413 21 7 6.8119 0.7377 -6.7466 22 6 7.5077 -0.0556 -5.8969 23 6 6.5737 -0.8628 -5.2257 24 7 7.0065 -1.7405 -4.3266 25 6 8.2919 -1.8559 -4.0665 26 7 9.2063 -1.1204 -4.6717 27 6 8.8683 -0.2163 -5.5854 28 7 9.8336 0.5538 -6.2104 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 0.7092 1.1620 3.4843 33 1 -0.1831 0.6438 -2.6222 34 1 1.0289 1.6001 -1.7363 35 1 1.1230 1.4664 -3.5087 36 1 1.4767 -0.8156 -4.4610 37 1 2.3155 -2.0023 -3.4332 38 1 4.2607 -0.4748 -3.2568 39 1 3.4220 0.7119 -4.2846 40 1 3.3348 -0.9463 -6.1266 41 1 4.1734 -2.1326 -5.0982 42 1 4.7596 0.9645 -7.2039 43 1 8.6102 -2.5786 -3.3298 44 1 10.7694 0.4367 -5.9834 45 1 9.5743 1.2101 -6.8759 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363455728.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:17 Heat of formation + Delta-G solvation = 69.401404 kcal Electronic energy + Delta-G solvation = -28049.258483 eV Core-core repulsion = 24103.137111 eV Total energy + Delta-G solvation = -3946.121372 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.67750 -39.47703 -39.17042 -36.18679 -35.63427 -34.45598 -33.78726 -32.17354 -31.54408 -30.04551 -29.41508 -26.93491 -25.69549 -25.06224 -24.38806 -23.74304 -22.77651 -21.33638 -20.87364 -18.84837 -18.65935 -18.32598 -16.98037 -16.53509 -16.31851 -16.25526 -15.93455 -15.39976 -14.97118 -14.77663 -14.68432 -14.49319 -14.21176 -13.96725 -13.91743 -13.15605 -13.01972 -12.48091 -12.39694 -12.23896 -12.14846 -11.93805 -11.84549 -11.60224 -11.20840 -10.98031 -10.83869 -10.67757 -10.55890 -10.46785 -10.23748 -10.13908 -9.94647 -9.45125 -9.17030 -8.95293 -8.60038 -8.29501 -8.16075 -8.07721 -6.02202 -4.05001 0.73103 1.24384 2.11791 2.53877 3.07780 3.34947 3.40414 3.46864 3.59537 3.68106 3.81843 3.84171 3.99029 4.25122 4.48011 4.51429 4.62341 4.84027 4.89126 4.99091 5.11885 5.29671 5.31544 5.45704 5.51423 5.59590 5.70840 5.83147 5.87348 6.05637 6.18764 6.22114 6.28537 6.51736 6.65086 6.69100 6.83912 6.91541 6.92891 7.09612 7.39913 7.46801 7.47784 7.74718 7.96020 8.10213 8.20201 8.38281 9.03753 9.20115 9.60486 11.05436 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.013903 B = 0.002737 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.402810 B =10226.192362 C =11549.201443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.032 3.968 3 H 0.050 0.950 4 C -0.500 4.500 5 H 0.074 0.926 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.519 3.481 13 O -0.539 6.539 14 N -0.633 5.633 15 C 0.086 3.914 16 C 0.122 3.878 17 C -0.150 4.150 18 C 0.116 3.884 19 N -0.468 5.468 20 C 0.250 3.750 21 N -0.468 5.468 22 C -0.114 4.114 23 C 0.305 3.695 24 N -0.550 5.550 25 C 0.363 3.637 26 N -0.594 5.594 27 C 0.505 3.495 28 N -0.822 5.822 29 H 0.029 0.971 30 H 0.092 0.908 31 H 0.025 0.975 32 H 0.260 0.740 33 H 0.054 0.946 34 H 0.080 0.920 35 H 0.054 0.946 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.221 0.779 43 H 0.205 0.795 44 H 0.408 0.592 45 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.646 1.715 -21.987 23.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.011 3.989 3 H 0.068 0.932 4 C -0.539 4.539 5 H 0.092 0.908 6 C -0.142 4.142 7 N -0.537 5.537 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.197 1.197 12 C 0.311 3.689 13 O -0.414 6.414 14 N -0.369 5.369 15 C -0.057 4.057 16 C -0.002 4.002 17 C -0.190 4.190 18 C -0.006 4.006 19 N -0.159 5.159 20 C -0.037 4.037 21 N -0.187 5.187 22 C -0.241 4.241 23 C 0.063 3.937 24 N -0.274 5.274 25 C 0.071 3.929 26 N -0.324 5.324 27 C 0.251 3.749 28 N -0.365 5.365 29 H 0.048 0.952 30 H 0.110 0.890 31 H 0.044 0.956 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.238 0.762 43 H 0.221 0.779 44 H 0.239 0.761 45 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 8.356 1.165 -21.603 23.192 hybrid contribution -0.231 -0.006 0.580 0.625 sum 8.125 1.159 -21.023 22.568 Atomic orbital electron populations 1.21978 0.96566 0.99968 1.01596 1.18831 0.94238 0.96568 0.89250 0.93196 1.21163 1.30837 1.12820 0.89047 0.90836 1.24940 0.95097 0.95091 0.99096 1.69866 1.37201 1.23149 1.23500 0.86464 0.78459 0.80324 0.82066 1.20661 1.21298 1.19706 1.22089 0.78293 0.84225 0.84323 1.90540 1.37738 1.26865 1.86259 1.48095 1.53000 1.29980 1.05778 1.21853 0.94183 0.87564 1.02117 1.21100 0.92993 0.98209 0.87911 1.22363 0.99418 1.00068 0.97168 1.21916 0.80755 0.99636 0.98333 1.45222 1.05553 1.32089 1.33071 1.25321 0.95209 0.90398 0.92752 1.70184 1.02577 1.23979 1.21941 1.19676 0.94441 1.04500 1.05457 1.18767 0.86174 0.94469 0.94266 1.67327 1.18411 1.22948 1.18681 1.24500 0.81744 0.93093 0.93538 1.68045 1.38718 1.11816 1.13823 1.17783 0.84005 0.86616 0.86512 1.42173 1.08126 1.41285 1.44870 0.95226 0.88990 0.95640 0.93002 0.92751 0.90133 0.92710 0.91202 0.89916 0.90254 0.91404 0.88351 0.88325 0.76241 0.77900 0.76128 0.75183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 8.60 37.16 0.32 -2.94 16 2 C 0.03 0.80 1.83 -92.93 -0.17 0.63 16 3 H 0.05 1.30 7.40 -51.93 -0.38 0.91 16 4 C -0.50 -14.37 8.37 -34.44 -0.29 -14.66 16 5 H 0.07 2.24 6.75 -52.49 -0.35 1.89 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.90 -25.30 11.32 55.43 0.63 -24.67 16 8 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 9 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 11 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 12 C 0.52 11.87 7.07 -10.99 -0.08 11.79 16 13 O -0.54 -14.11 15.04 5.56 0.08 -14.03 16 14 N -0.63 -10.80 2.87 -181.58 -0.52 -11.32 16 15 C 0.09 1.18 8.80 59.84 0.53 1.71 16 16 C 0.12 1.63 5.41 -4.05 -0.02 1.61 16 17 C -0.15 -1.87 5.86 -26.73 -0.16 -2.02 16 18 C 0.12 1.10 6.16 -4.05 -0.02 1.08 16 19 N -0.47 -5.30 2.79 -117.63 -0.33 -5.63 16 20 C 0.25 2.36 12.51 -89.50 -1.12 1.24 16 21 N -0.47 -5.56 11.28 -11.85 -0.13 -5.69 16 22 C -0.11 -1.53 7.17 -84.55 -0.61 -2.13 16 23 C 0.30 4.36 8.05 -155.80 -1.25 3.10 16 24 N -0.55 -8.27 10.47 -13.90 -0.15 -8.42 16 25 C 0.36 4.69 12.25 -92.07 -1.13 3.56 16 26 N -0.59 -7.58 10.45 -13.61 -0.14 -7.73 16 27 C 0.51 6.21 7.87 -154.65 -1.22 4.99 16 28 N -0.82 -6.81 9.05 31.37 0.28 -6.52 16 29 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.09 2.31 6.07 -51.93 -0.32 2.00 16 31 H 0.02 0.47 4.53 -51.92 -0.24 0.23 16 32 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.05 0.70 6.95 -51.93 -0.36 0.33 16 34 H 0.08 1.24 6.01 -51.93 -0.31 0.93 16 35 H 0.05 0.57 8.07 -51.93 -0.42 0.15 16 36 H 0.07 0.67 8.07 -51.93 -0.42 0.25 16 37 H 0.08 1.26 7.42 -51.93 -0.39 0.87 16 38 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.10 0.55 8.13 -51.93 -0.42 0.13 16 41 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.22 0.98 8.06 -52.48 -0.42 0.55 16 43 H 0.20 1.93 8.06 -52.49 -0.42 1.51 16 44 H 0.41 2.55 8.95 -40.82 -0.37 2.18 16 45 H 0.42 2.89 8.85 -40.82 -0.36 2.52 16 LS Contribution 373.60 15.07 5.63 5.63 Total: -1.00 -36.80 373.60 -10.99 -47.79 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -6.01 Total: 4.03 kcal Atomic # 6 Polarization: 14.81 SS G_CDS: -5.31 Total: 9.49 kcal Atomic # 7 Polarization: -69.63 SS G_CDS: -0.36 Total: -69.99 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: 0.08 Total: -14.03 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.80 -10.99 -47.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363455728.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.192 kcal (2) G-P(sol) polarization free energy of solvation -36.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds