Wall clock time and date at job start Tue Mar 31 2020 18:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46860 * 2 1 4 4 C 1.50703 * 109.46762 * 119.99516 * 2 1 3 5 5 H 1.08000 * 119.99907 * 119.99655 * 4 2 1 6 6 C 1.37875 * 120.00002 * 300.00392 * 4 2 1 7 7 N 1.31513 * 120.00355 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00000 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47316 * 89.99678 * 8 6 4 10 10 H 1.48506 * 109.47388 * 209.99587 * 8 6 4 11 11 H 1.48497 * 109.47086 * 329.99684 * 8 6 4 12 12 C 1.50692 * 109.47506 * 239.99390 * 2 1 3 13 13 O 1.21277 * 120.00458 * 240.00400 * 12 2 1 14 14 N 1.34785 * 119.99963 * 60.00115 * 12 2 1 15 15 C 1.46495 * 119.99692 * 0.02562 * 14 12 2 16 16 C 1.46491 * 120.00166 * 180.02562 * 14 12 2 17 17 C 1.53001 * 109.47355 * 270.00327 * 16 14 12 18 18 C 1.52994 * 109.47532 * 179.97438 * 17 16 14 19 19 N 1.46492 * 109.47501 * 179.97438 * 18 17 16 20 20 C 1.36319 * 126.28134 * 265.00168 * 19 18 17 21 21 N 1.30139 * 109.98121 * 179.97438 * 20 19 18 22 22 C 1.35474 * 109.43978 * 359.97438 * 21 20 19 23 23 C 1.37203 * 126.28024 * 84.99691 * 19 18 17 24 24 N 1.32892 * 134.91178 * 0.02562 * 23 19 18 25 25 C 1.31651 * 120.63683 * 179.97438 * 24 23 19 26 26 N 1.32037 * 122.46350 * 0.02562 * 25 24 23 27 27 C 1.32914 * 121.19189 * 359.97438 * 26 25 24 28 28 N 1.38395 * 120.76956 * 179.73041 * 27 26 25 29 29 H 1.09000 * 109.47456 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47580 * 300.00571 * 1 2 3 31 31 H 1.09008 * 109.47148 * 60.00276 * 1 2 3 32 32 H 0.97001 * 120.00630 * 180.02562 * 7 6 4 33 33 H 1.09006 * 109.47413 * 270.00235 * 15 14 12 34 34 H 1.09001 * 109.47174 * 30.00118 * 15 14 12 35 35 H 1.09000 * 109.47019 * 150.00087 * 15 14 12 36 36 H 1.08999 * 109.47225 * 149.99653 * 16 14 12 37 37 H 1.08999 * 109.47180 * 29.99963 * 16 14 12 38 38 H 1.08994 * 109.47054 * 59.99452 * 17 16 14 39 39 H 1.08999 * 109.46680 * 299.99943 * 17 16 14 40 40 H 1.09007 * 109.46993 * 59.99679 * 18 17 16 41 41 H 1.09001 * 109.46977 * 300.00250 * 18 17 16 42 42 H 1.08003 * 125.01353 * 0.03470 * 20 19 18 43 43 H 1.07996 * 118.76536 * 179.97438 * 25 24 23 44 44 H 0.97001 * 120.00101 * 0.02562 * 28 27 26 45 45 H 0.97001 * 119.99361 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6531 -1.5885 1.1316 6 6 1.6990 -0.2392 2.4828 7 7 0.9433 0.8303 2.6034 8 14 2.3222 -1.1193 4.0081 9 1 3.6301 -0.5437 4.4121 10 1 1.3441 -0.9486 5.1124 11 1 2.4877 -2.5651 3.7125 12 6 2.0324 -0.7105 -1.2303 13 8 2.7296 -1.6965 -1.1190 14 7 1.7068 -0.2501 -2.4545 15 6 0.8651 0.9413 -2.5890 16 6 2.1947 -0.9411 -3.6506 17 6 3.5428 -0.3494 -4.0672 18 6 4.0527 -1.0714 -5.3160 19 7 5.3431 -0.5044 -5.7153 20 6 5.5415 0.4761 -6.6413 21 7 6.8119 0.7377 -6.7466 22 6 7.5077 -0.0556 -5.8969 23 6 6.5737 -0.8628 -5.2257 24 7 7.0065 -1.7405 -4.3266 25 6 8.2919 -1.8559 -4.0665 26 7 9.2063 -1.1204 -4.6717 27 6 8.8683 -0.2163 -5.5854 28 7 9.8336 0.5538 -6.2104 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 0.7092 1.1620 3.4843 33 1 -0.1831 0.6438 -2.6222 34 1 1.0289 1.6001 -1.7363 35 1 1.1230 1.4664 -3.5087 36 1 1.4767 -0.8156 -4.4610 37 1 2.3155 -2.0023 -3.4332 38 1 4.2607 -0.4748 -3.2568 39 1 3.4220 0.7119 -4.2846 40 1 3.3348 -0.9463 -6.1266 41 1 4.1734 -2.1326 -5.0982 42 1 4.7596 0.9645 -7.2039 43 1 8.6102 -2.5786 -3.3298 44 1 10.7694 0.4367 -5.9834 45 1 9.5743 1.2101 -6.8759 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363455728.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:16 Heat of formation + Delta-G solvation = 45.032699 kcal Electronic energy + Delta-G solvation = -28050.315189 eV Core-core repulsion = 24103.137111 eV Total energy + Delta-G solvation = -3947.178078 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.53022 -40.86407 -40.28905 -37.27460 -36.69270 -35.98984 -35.40149 -33.16787 -32.90206 -31.61662 -30.27551 -28.10231 -27.09164 -26.96027 -25.24319 -24.78984 -24.06594 -22.76713 -21.70285 -20.19321 -19.57975 -19.35358 -18.40206 -17.83396 -17.59606 -17.33324 -17.19551 -16.88672 -16.36682 -15.99022 -15.83577 -15.63613 -15.23781 -15.00917 -14.92079 -14.73005 -14.49831 -14.05003 -13.66317 -13.39876 -13.21466 -13.11481 -12.97415 -12.88973 -12.86732 -12.69180 -12.52761 -12.21980 -12.18053 -12.03255 -11.80690 -11.45827 -11.02548 -10.95746 -10.61770 -10.38153 -10.22142 -10.13443 -9.52851 -8.95572 -8.17472 -6.27571 -0.14597 0.28412 1.31405 1.37267 1.37836 1.50107 1.73226 1.92204 2.23918 2.29331 2.45337 2.86636 3.01756 3.11668 3.14885 3.41593 3.73968 3.87628 3.92263 4.03923 4.11994 4.19119 4.32862 4.40568 4.41826 4.61176 4.71928 4.73545 4.76020 4.84292 4.94225 5.00032 5.04958 5.12568 5.16354 5.39216 5.48512 5.69364 5.71014 5.78828 5.94216 5.96449 6.15261 6.20798 6.58096 6.62601 6.70676 6.81000 7.28641 7.38425 7.51403 8.88145 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.013903 B = 0.002737 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.402810 B =10226.192362 C =11549.201443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.028 3.972 3 H 0.035 0.965 4 C -0.532 4.532 5 H 0.043 0.957 6 C 0.021 3.979 7 N -0.909 5.909 8 Si 0.952 3.048 9 H -0.276 1.276 10 H -0.271 1.271 11 H -0.279 1.279 12 C 0.514 3.486 13 O -0.587 6.587 14 N -0.623 5.623 15 C 0.076 3.924 16 C 0.120 3.880 17 C -0.136 4.136 18 C 0.121 3.879 19 N -0.470 5.470 20 C 0.267 3.733 21 N -0.488 5.488 22 C -0.128 4.128 23 C 0.271 3.729 24 N -0.584 5.584 25 C 0.351 3.649 26 N -0.602 5.602 27 C 0.491 3.509 28 N -0.802 5.802 29 H 0.017 0.983 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.265 0.735 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.103 0.897 36 H 0.129 0.871 37 H 0.057 0.943 38 H 0.018 0.982 39 H 0.086 0.914 40 H 0.157 0.843 41 H 0.081 0.919 42 H 0.276 0.724 43 H 0.225 0.775 44 H 0.419 0.581 45 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.190 3.203 -24.701 25.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.007 3.993 3 H 0.053 0.947 4 C -0.570 4.570 5 H 0.062 0.938 6 C -0.178 4.178 7 N -0.549 5.549 8 Si 0.778 3.222 9 H -0.202 1.202 10 H -0.196 1.196 11 H -0.205 1.205 12 C 0.305 3.695 13 O -0.467 6.467 14 N -0.356 5.356 15 C -0.065 4.065 16 C -0.003 4.003 17 C -0.176 4.176 18 C 0.000 4.000 19 N -0.162 5.162 20 C -0.019 4.019 21 N -0.207 5.207 22 C -0.255 4.255 23 C 0.029 3.971 24 N -0.309 5.309 25 C 0.060 3.940 26 N -0.333 5.333 27 C 0.236 3.764 28 N -0.346 5.346 29 H 0.036 0.964 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.121 0.879 36 H 0.147 0.853 37 H 0.076 0.924 38 H 0.037 0.963 39 H 0.105 0.895 40 H 0.174 0.826 41 H 0.100 0.900 42 H 0.291 0.709 43 H 0.241 0.759 44 H 0.251 0.749 45 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 6.895 2.716 -24.377 25.479 hybrid contribution 0.216 -0.381 1.334 1.404 sum 7.111 2.335 -23.043 24.228 Atomic orbital electron populations 1.21797 0.94829 0.99372 1.02583 1.18726 0.95598 0.95378 0.89569 0.94686 1.21318 1.31525 1.12697 0.91478 0.93848 1.25565 0.95184 0.95789 1.01306 1.69937 1.37160 1.23496 1.24292 0.85649 0.78448 0.78813 0.79321 1.20151 1.19561 1.20458 1.21661 0.78197 0.83688 0.85951 1.90512 1.39970 1.28938 1.87298 1.48004 1.52082 1.30505 1.05018 1.22118 0.94566 0.86107 1.03732 1.21397 0.94885 0.96441 0.87596 1.22177 0.97324 1.01506 0.96606 1.22000 0.81094 0.98102 0.98797 1.45453 1.05114 1.32458 1.33134 1.26480 0.95608 0.88614 0.91184 1.70200 1.03715 1.24447 1.22341 1.19906 0.94886 1.04805 1.05876 1.19211 0.87878 0.95109 0.94878 1.67321 1.19383 1.24275 1.19925 1.24969 0.81557 0.93568 0.93952 1.68096 1.38569 1.12286 1.14332 1.18061 0.84721 0.86936 0.86695 1.42118 1.08086 1.40320 1.44088 0.96405 0.91382 0.91200 0.92565 0.90899 0.92147 0.87864 0.85334 0.92447 0.96265 0.89516 0.82555 0.90043 0.70915 0.75918 0.74918 0.74265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.82 8.60 71.98 0.62 -5.20 16 2 C 0.03 1.46 1.83 -12.29 -0.02 1.43 16 3 H 0.04 1.89 7.40 -2.39 -0.02 1.87 16 4 C -0.53 -31.87 8.37 25.60 0.21 -31.65 16 5 H 0.04 2.81 6.75 -2.91 -0.02 2.79 16 6 C 0.02 1.19 5.30 84.65 0.45 1.64 16 7 N -0.91 -51.79 11.32 21.45 0.24 -51.55 16 8 Si 0.95 46.14 29.54 68.60 2.03 48.16 16 9 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 10 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.28 -13.76 7.11 99.48 0.71 -13.06 16 12 C 0.51 24.12 7.07 87.65 0.62 24.74 16 13 O -0.59 -32.49 15.04 -3.02 -0.05 -32.54 16 14 N -0.62 -20.28 2.87 -846.78 -2.43 -22.71 16 15 C 0.08 1.81 8.80 127.77 1.12 2.94 16 16 C 0.12 2.89 5.41 86.38 0.47 3.36 16 17 C -0.14 -3.14 5.86 30.59 0.18 -2.96 16 18 C 0.12 1.98 6.16 86.38 0.53 2.52 16 19 N -0.47 -9.78 2.79 -526.06 -1.47 -11.24 16 20 C 0.27 4.12 12.51 179.96 2.25 6.37 16 21 N -0.49 -10.66 11.28 -191.40 -2.16 -12.82 16 22 C -0.13 -3.40 7.17 39.69 0.28 -3.12 16 23 C 0.27 7.82 8.05 133.86 1.08 8.89 16 24 N -0.58 -18.56 10.47 -197.89 -2.07 -20.63 16 25 C 0.35 9.60 12.25 180.85 2.22 11.82 16 26 N -0.60 -15.86 10.45 -196.97 -2.06 -17.92 16 27 C 0.49 12.14 7.87 133.45 1.05 13.19 16 28 N -0.80 -12.79 9.05 -54.65 -0.49 -13.29 16 29 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.07 3.43 6.07 -2.39 -0.01 3.42 16 31 H 0.07 2.48 4.53 -2.38 -0.01 2.46 16 32 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 33 H 0.07 1.52 6.95 -2.38 -0.02 1.50 16 34 H 0.06 1.72 6.01 -2.39 -0.01 1.71 16 35 H 0.10 1.53 8.07 -2.39 -0.02 1.51 16 36 H 0.13 1.68 8.07 -2.39 -0.02 1.66 16 37 H 0.06 1.72 7.42 -2.39 -0.02 1.70 16 38 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.16 0.78 8.13 -2.38 -0.02 0.76 16 41 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.28 0.73 8.06 -2.91 -0.02 0.70 16 43 H 0.22 4.62 8.06 -2.91 -0.02 4.59 16 44 H 0.42 4.92 8.95 -92.71 -0.83 4.09 16 45 H 0.42 5.44 8.85 -92.71 -0.82 4.62 16 Total: -1.00 -88.08 373.60 2.01 -86.07 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -0.59 Total: 14.50 kcal Atomic # 6 Polarization: 22.89 SS G_CDS: 11.06 Total: 33.96 kcal Atomic # 7 Polarization: -139.72 SS G_CDS: -10.44 Total: -150.16 kcal Atomic # 8 Polarization: -32.49 SS G_CDS: -0.05 Total: -32.54 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.16 kcal Total: -88.08 2.01 -86.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363455728.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.106 kcal (2) G-P(sol) polarization free energy of solvation -88.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds