Wall clock time and date at job start Tue Mar 31 2020 17:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30841 * 125.90113 * 2 1 4 4 N 1.40091 * 108.20334 * 180.25855 * 3 2 1 5 5 C 1.46494 * 126.03243 * 179.74177 * 4 3 2 6 6 C 1.50702 * 109.47382 * 269.97713 * 5 4 3 7 7 H 1.08004 * 119.99628 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00077 * 180.02562 * 6 5 4 9 9 N 1.31508 * 120.00457 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99899 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47649 * 90.00142 * 10 8 6 12 12 H 1.48503 * 109.47268 * 209.99890 * 10 8 6 13 13 H 1.48501 * 109.47017 * 330.00009 * 10 8 6 14 14 C 1.34945 * 107.92641 * 359.72330 * 4 3 2 15 15 C 1.50701 * 126.12574 * 179.97438 * 14 4 3 16 16 C 1.35320 * 107.74359 * 359.97438 * 14 4 3 17 17 C 1.50701 * 126.03550 * 179.97438 * 16 14 4 18 18 C 1.52997 * 109.47212 * 89.99805 * 17 16 14 19 19 C 1.50697 * 109.47466 * 179.97438 * 18 17 16 20 20 O 1.21288 * 120.00038 * 0.02562 * 19 18 17 21 21 N 1.34777 * 120.00369 * 180.02562 * 19 18 17 22 22 C 1.39532 * 120.00026 * 180.02562 * 21 19 18 23 23 C 1.35793 * 126.67493 * 359.68247 * 22 21 19 24 24 N 1.33280 * 108.87355 * 179.83381 * 23 22 21 25 25 N 1.28739 * 109.98856 * 0.44271 * 24 23 22 26 26 N 1.36272 * 126.67246 * 180.02562 * 22 21 19 27 27 C 1.46498 * 126.84471 * 359.97438 * 26 22 21 28 28 H 1.08997 * 109.46948 * 270.20982 * 1 2 3 29 29 H 1.08997 * 109.46782 * 30.20449 * 1 2 3 30 30 H 1.08993 * 109.47399 * 150.20471 * 1 2 3 31 31 H 1.08997 * 109.47670 * 29.97655 * 5 4 3 32 32 H 1.09001 * 109.47011 * 149.97772 * 5 4 3 33 33 H 0.97000 * 120.00722 * 179.97438 * 9 8 6 34 34 H 1.08997 * 109.46870 * 270.02890 * 15 14 4 35 35 H 1.08996 * 109.46729 * 30.02414 * 15 14 4 36 36 H 1.08999 * 109.46868 * 150.02980 * 15 14 4 37 37 H 1.09002 * 109.47060 * 209.99860 * 17 16 14 38 38 H 1.09001 * 109.47380 * 329.99947 * 17 16 14 39 39 H 1.09002 * 109.47153 * 299.99998 * 18 17 16 40 40 H 1.08998 * 109.47533 * 59.99628 * 18 17 16 41 41 H 0.97003 * 119.99640 * 0.02562 * 21 19 18 42 42 H 1.07999 * 125.56775 * 359.97168 * 23 22 21 43 43 H 1.09007 * 109.46760 * 90.00911 * 27 26 22 44 44 H 1.09004 * 109.47603 * 210.00231 * 27 26 22 45 45 H 1.08995 * 109.47890 * 330.00937 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 -0.0060 5 6 4.7899 1.5006 -0.0134 6 6 5.1881 1.7951 -1.4367 7 1 4.6181 1.3786 -2.2540 8 6 6.2801 2.5960 -1.6954 9 7 6.9745 3.1028 -0.7002 10 14 6.7733 2.9615 -3.4596 11 1 6.0764 4.1876 -3.9247 12 1 8.2419 3.1702 -3.5300 13 1 6.3938 1.8174 -4.3269 14 6 3.6142 -0.7155 -0.0034 15 6 4.8350 -1.5991 -0.0085 16 6 2.3271 -1.1330 0.0046 17 6 1.8598 -2.5657 0.0095 18 6 1.7100 -3.0484 1.4535 19 6 1.2421 -4.4809 1.4585 20 8 1.0481 -5.0591 0.4101 21 7 1.0393 -5.1196 2.6278 22 6 0.6066 -6.4462 2.6323 23 6 0.3437 -7.2172 1.5458 24 7 -0.0420 -8.4248 1.9573 25 7 -0.0504 -8.4694 3.2439 26 7 0.3595 -7.2180 3.7279 27 6 0.4957 -6.8204 5.1313 28 1 -0.3633 0.0038 1.0276 29 1 -0.3633 0.8881 -0.5170 30 1 -0.3634 -0.8917 -0.5106 31 1 4.5589 2.4341 0.4997 32 1 5.6118 0.9990 0.4975 33 1 7.7430 3.6660 -0.8821 34 1 5.1239 -1.8136 -1.0373 35 1 5.6538 -1.0903 0.5002 36 1 4.6102 -2.5322 0.5080 37 1 0.8981 -2.6360 -0.4988 38 1 2.5903 -3.1879 -0.5076 39 1 2.6717 -2.9782 1.9618 40 1 0.9796 -2.4263 1.9707 41 1 1.1941 -4.6571 3.4663 42 1 0.4346 -6.9039 0.5163 43 1 -0.4476 -6.4029 5.4838 44 1 0.7543 -7.6921 5.7325 45 1 1.2814 -6.0704 5.2220 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364998302.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:30 Heat of formation + Delta-G solvation = 125.677082 kcal Electronic energy + Delta-G solvation = -27523.558961 eV Core-core repulsion = 23579.877885 eV Total energy + Delta-G solvation = -3943.681075 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.41638 -40.75661 -40.08682 -35.88605 -34.57587 -34.25369 -33.56218 -32.56231 -30.81199 -29.65807 -29.03862 -28.02938 -26.95748 -25.95521 -24.41045 -22.91783 -22.43864 -21.78972 -20.54654 -18.93215 -18.75824 -18.52646 -17.28056 -16.78165 -16.72104 -16.37630 -15.80794 -15.49500 -14.89000 -14.55645 -14.41202 -14.14299 -13.99342 -13.68541 -13.44342 -13.21195 -13.04213 -12.82836 -12.57019 -12.46104 -12.34831 -12.07299 -11.88708 -11.78166 -11.70697 -11.42783 -11.38179 -11.33214 -11.04955 -10.87902 -10.84968 -10.37373 -10.29155 -10.13643 -9.79753 -9.71181 -8.72985 -8.69981 -8.27824 -7.59489 -6.31943 -4.39431 0.90070 1.47192 2.10196 2.51370 2.53526 2.69042 3.17923 3.24429 3.26758 3.28270 3.52247 3.95409 4.16336 4.25061 4.50356 4.62976 4.76697 4.82811 4.95183 5.01666 5.04093 5.09961 5.22226 5.26148 5.28217 5.50589 5.54784 5.70054 5.81908 5.85058 5.90568 5.95575 6.06537 6.14518 6.24779 6.28454 6.31599 6.43696 6.69677 6.73994 6.95208 7.03216 7.41173 7.55009 7.60658 7.82063 7.96580 7.97184 8.58366 8.68742 9.27427 10.75691 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.022476 B = 0.002116 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.465658 B =13230.123038 C =13453.292740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.052 3.948 3 N -0.296 5.296 4 N -0.324 5.324 5 C 0.257 3.743 6 C -0.536 4.536 7 H 0.064 0.936 8 C 0.066 3.934 9 N -0.892 5.892 10 Si 0.906 3.094 11 H -0.277 1.277 12 H -0.283 1.283 13 H -0.272 1.272 14 C 0.096 3.904 15 C -0.087 4.087 16 C -0.273 4.273 17 C -0.012 4.012 18 C -0.126 4.126 19 C 0.523 3.477 20 O -0.499 6.499 21 N -0.649 5.649 22 C 0.282 3.718 23 C -0.086 4.086 24 N -0.224 5.224 25 N -0.078 5.078 26 N -0.392 5.392 27 C 0.089 3.911 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.268 0.732 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.414 0.586 42 H 0.209 0.791 43 H 0.085 0.915 44 H 0.102 0.898 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.484 -15.248 12.331 22.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.113 4.113 3 N -0.120 5.120 4 N -0.103 5.103 5 C 0.139 3.861 6 C -0.575 4.575 7 H 0.082 0.918 8 C -0.138 4.138 9 N -0.530 5.530 10 Si 0.733 3.267 11 H -0.203 1.203 12 H -0.209 1.209 13 H -0.196 1.196 14 C -0.036 4.036 15 C -0.145 4.145 16 C -0.285 4.285 17 C -0.051 4.051 18 C -0.167 4.167 19 C 0.311 3.689 20 O -0.370 6.370 21 N -0.299 5.299 22 C 0.054 3.946 23 C -0.246 4.246 24 N -0.093 5.093 25 N -0.057 5.057 26 N -0.186 5.186 27 C -0.052 4.052 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.251 0.749 42 H 0.225 0.775 43 H 0.104 0.896 44 H 0.120 0.880 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.710 -15.475 12.007 22.324 hybrid contribution 0.917 0.943 -0.344 1.360 sum -9.793 -14.532 11.664 21.050 Atomic orbital electron populations 1.20037 0.88006 1.02567 1.01812 1.21953 0.96122 0.90741 1.02439 1.77303 0.87487 1.22660 1.24547 1.49275 1.05827 1.04223 1.50973 1.19669 0.77912 0.89537 0.98989 1.21291 1.13041 1.31850 0.91277 0.91785 1.24925 0.95670 0.94981 0.98198 1.69908 1.18915 1.32939 1.31200 0.86353 0.77642 0.79025 0.83672 1.20282 1.20851 1.19632 1.20795 0.96106 0.85727 1.00932 1.20363 0.93777 0.97063 1.03327 1.19260 0.91357 0.94824 1.23043 1.19429 1.02092 0.91285 0.92309 1.21810 1.03526 0.88807 1.02522 1.21456 0.76027 0.89583 0.81816 1.90657 1.48087 1.67224 1.30988 1.43239 1.66692 1.08317 1.11610 1.18947 1.00744 0.85815 0.89059 1.23592 1.11233 0.89143 1.00633 1.74246 1.11635 1.19402 1.03984 1.82069 1.22774 0.96862 1.04017 1.50592 1.50622 1.10913 1.06465 1.22040 1.03544 1.02847 0.76808 0.91606 0.91501 0.91165 0.93055 0.93072 0.92219 0.90316 0.90879 0.91113 0.90847 0.90986 0.88159 0.88072 0.74935 0.77511 0.89623 0.87966 0.89425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 10.26 36.01 0.37 -0.47 16 2 C 0.05 0.90 7.22 -82.41 -0.59 0.31 16 3 N -0.30 -6.42 12.58 33.67 0.42 -6.00 16 4 N -0.32 -7.13 3.60 -58.32 -0.21 -7.34 16 5 C 0.26 6.32 6.00 -5.20 -0.03 6.29 16 6 C -0.54 -14.40 9.39 -34.44 -0.32 -14.73 16 7 H 0.06 1.78 7.81 -52.48 -0.41 1.37 16 8 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 9 N -0.89 -24.55 13.29 55.43 0.74 -23.82 16 10 Si 0.91 20.78 29.54 -169.99 -5.02 15.76 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 14 C 0.10 1.75 6.93 -82.26 -0.57 1.18 16 15 C -0.09 -1.29 9.72 36.01 0.35 -0.94 16 16 C -0.27 -4.32 5.35 -105.05 -0.56 -4.89 16 17 C -0.01 -0.14 4.41 -27.88 -0.12 -0.27 16 18 C -0.13 -1.03 5.68 -27.89 -0.16 -1.19 16 19 C 0.52 4.63 7.79 -10.99 -0.09 4.54 16 20 O -0.50 -6.10 13.15 5.55 0.07 -6.03 16 21 N -0.65 -4.36 5.42 -11.29 -0.06 -4.42 16 22 C 0.28 2.70 7.76 -152.30 -1.18 1.52 16 23 C -0.09 -1.05 10.76 -17.80 -0.19 -1.24 16 24 N -0.22 -3.04 12.32 30.23 0.37 -2.66 16 25 N -0.08 -0.95 13.81 60.35 0.83 -0.12 16 26 N -0.39 -3.41 4.09 -66.98 -0.27 -3.68 16 27 C 0.09 0.29 11.39 59.85 0.68 0.98 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.76 7.25 -51.93 -0.38 0.38 16 31 H 0.05 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.05 1.24 7.05 -51.93 -0.37 0.87 16 33 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 34 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.07 1.13 7.08 -51.93 -0.37 0.76 16 36 H 0.07 0.80 7.77 -51.93 -0.40 0.40 16 37 H 0.07 0.87 7.20 -51.93 -0.37 0.50 16 38 H 0.07 0.88 7.73 -51.93 -0.40 0.48 16 39 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.41 1.24 8.16 -40.82 -0.33 0.91 16 42 H 0.21 2.61 5.83 -52.49 -0.31 2.30 16 43 H 0.09 0.16 8.14 -51.92 -0.42 -0.26 16 44 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 45 H 0.09 0.07 7.65 -51.93 -0.40 -0.33 16 LS Contribution 384.21 15.07 5.79 5.79 Total: -1.00 -34.53 384.21 -6.11 -40.63 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -6.25 Total: -0.86 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -2.52 Total: -7.25 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: 1.82 Total: -48.04 kcal Atomic # 8 Polarization: -6.10 SS G_CDS: 0.07 Total: -6.03 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.53 -6.11 -40.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364998302.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.310 kcal (2) G-P(sol) polarization free energy of solvation -34.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds