Wall clock time and date at job start Tue Mar 31 2020 17:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35243 * 126.07106 * 2 1 4 4 C 1.40403 * 107.86626 * 180.02562 * 3 2 1 5 5 N 1.40200 * 125.97199 * 180.26329 * 4 3 2 6 6 C 1.34776 * 119.99633 * 359.71918 * 5 4 3 7 7 O 1.21588 * 120.00172 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99433 * 179.97438 * 6 5 4 9 9 C 1.46503 * 119.99920 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.46830 * 34.99632 * 9 8 6 11 11 C 1.53000 * 109.46960 * 275.00073 * 9 8 6 12 12 C 1.50700 * 109.47452 * 154.99703 * 9 8 6 13 13 C 1.39868 * 125.89892 * 204.71377 * 12 9 8 14 14 C 1.35324 * 107.91564 * 179.86604 * 13 12 9 15 15 N 1.34939 * 107.74771 * 0.39525 * 14 13 12 16 16 C 1.46501 * 126.03810 * 179.75071 * 15 14 13 17 17 N 1.30841 * 125.89785 * 25.02734 * 12 9 8 18 18 N 1.31214 * 108.05583 * 0.02562 * 4 3 2 19 19 N 1.34966 * 126.07014 * 180.02562 * 2 1 3 20 20 C 1.46501 * 125.97694 * 359.95591 * 19 2 1 21 21 C 1.50704 * 109.46910 * 270.00151 * 20 19 2 22 22 H 1.07999 * 119.99936 * 359.97438 * 21 20 19 23 23 C 1.37874 * 119.99785 * 179.97438 * 21 20 19 24 24 N 1.31520 * 119.99787 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 120.00248 * 0.02562 * 23 21 20 26 26 H 1.48505 * 109.46685 * 89.99909 * 25 23 21 27 27 H 1.48501 * 109.46910 * 209.99644 * 25 23 21 28 28 H 1.48493 * 109.47134 * 329.99767 * 25 23 21 29 29 H 1.09006 * 109.46874 * 269.97053 * 1 2 3 30 30 H 1.09001 * 109.47276 * 29.96714 * 1 2 3 31 31 H 1.09007 * 109.47592 * 149.97143 * 1 2 3 32 32 H 1.07997 * 126.06934 * 0.05241 * 3 2 1 33 33 H 0.97002 * 119.99888 * 179.71746 * 5 4 3 34 34 H 0.96998 * 120.00624 * 359.97438 * 8 6 5 35 35 H 1.08999 * 109.47062 * 179.97438 * 11 9 8 36 36 H 1.09001 * 109.46988 * 299.99462 * 11 9 8 37 37 H 1.08999 * 109.47530 * 59.99898 * 11 9 8 38 38 H 1.07996 * 126.04358 * 359.97438 * 13 12 9 39 39 H 1.08007 * 126.12265 * 180.14924 * 14 13 12 40 40 H 1.08999 * 109.46888 * 270.02236 * 16 15 14 41 41 H 1.09000 * 109.47228 * 30.02587 * 16 15 14 42 42 H 1.09001 * 109.46974 * 150.02472 * 16 15 14 43 43 H 1.09001 * 109.47134 * 29.99838 * 20 19 2 44 44 H 1.08997 * 109.47405 * 150.00333 * 20 19 2 45 45 H 0.97006 * 120.00070 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6370 0.6545 -0.0006 5 7 4.7738 1.4751 0.0044 6 6 4.6370 2.8159 0.0048 7 8 3.5277 3.3138 0.0012 8 7 5.7298 3.6046 0.0101 9 6 5.5812 5.0621 0.0110 10 1 4.7044 5.3375 0.5971 11 6 5.4103 5.5582 -1.4262 12 6 6.8087 5.6919 0.6173 13 6 6.8686 6.9478 1.2300 14 6 8.1407 7.1477 1.6462 15 7 8.8620 6.0608 1.3010 16 6 10.2904 5.8579 1.5556 17 7 8.0038 5.1607 0.6563 18 7 3.6336 -0.6576 -0.0015 19 7 2.3016 -1.0909 -0.0005 20 6 1.8500 -2.4846 -0.0002 21 6 1.6961 -2.9624 1.4208 22 1 1.9133 -2.2949 2.2415 23 6 1.2779 -4.2518 1.6730 24 7 1.1440 -4.6689 2.9131 25 14 0.9029 -5.4066 0.2534 26 1 2.1353 -6.1446 -0.1231 27 1 -0.1465 -6.3732 0.6657 28 1 0.4217 -4.6202 -0.9106 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3634 0.8903 -0.5133 31 1 -0.3634 -0.8898 -0.5143 32 1 1.9720 2.1211 0.0008 33 1 5.6587 1.0778 0.0077 34 1 6.6147 3.2074 0.0141 35 1 5.2993 6.6425 -1.4255 36 1 6.2871 5.2828 -2.0123 37 1 4.5224 5.1028 -1.8647 38 1 6.0449 7.6357 1.3512 39 1 8.5128 8.0225 2.1589 40 1 10.8675 6.2429 0.7149 41 1 10.5761 6.3865 2.4650 42 1 10.4902 4.7931 1.6762 43 1 0.8910 -2.5559 -0.5134 44 1 2.5843 -3.1046 -0.5144 45 1 0.8501 -5.5762 3.0906 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365496189.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:10 Heat of formation + Delta-G solvation = 138.640930 kcal Electronic energy + Delta-G solvation = -27338.137142 eV Core-core repulsion = 23395.018221 eV Total energy + Delta-G solvation = -3943.118920 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.61338 -40.73524 -39.60497 -36.19589 -34.66912 -33.43341 -33.10846 -31.60725 -31.07816 -30.41953 -30.25045 -27.01800 -26.96749 -26.32165 -24.00946 -22.60524 -21.77807 -21.27634 -20.07125 -19.67620 -19.47100 -17.95347 -17.11228 -17.06882 -16.39768 -15.88818 -15.68728 -15.35248 -14.88350 -14.66912 -14.48264 -14.21492 -13.87570 -13.80124 -13.60065 -13.28146 -13.10196 -12.88690 -12.74583 -12.57734 -12.33871 -12.22210 -12.16700 -11.83407 -11.54896 -11.48659 -11.16727 -11.04729 -10.76175 -10.52524 -9.99649 -9.90693 -9.69484 -9.64206 -9.52873 -9.20360 -8.90481 -8.74631 -7.90442 -7.36380 -6.22573 -4.25190 1.50537 2.10395 2.29956 2.51620 2.66429 3.13709 3.18384 3.24350 3.25828 3.57285 3.86820 4.02620 4.24648 4.30819 4.42146 4.52401 4.69841 4.95009 4.98589 5.06099 5.08626 5.27001 5.37935 5.40256 5.51187 5.57076 5.68553 5.76689 5.90043 6.01854 6.10338 6.24005 6.26623 6.34716 6.42985 6.54333 6.54900 6.62073 6.67473 6.85251 7.14350 7.33353 7.33884 7.54225 7.93283 7.99912 8.36170 8.65862 8.67838 8.83638 9.32844 10.90004 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.022055 B = 0.002108 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.234583 B =13276.802348 C =13953.545300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.093 3.907 3 C -0.285 4.285 4 C 0.288 3.712 5 N -0.644 5.644 6 C 0.716 3.284 7 O -0.567 6.567 8 N -0.737 5.737 9 C 0.248 3.752 10 H 0.110 0.890 11 C -0.158 4.158 12 C 0.069 3.931 13 C -0.260 4.260 14 C 0.055 3.945 15 N -0.375 5.375 16 C 0.101 3.899 17 N -0.291 5.291 18 N -0.323 5.323 19 N -0.319 5.319 20 C 0.232 3.768 21 C -0.539 4.539 22 H 0.081 0.919 23 C 0.078 3.922 24 N -0.887 5.887 25 Si 0.874 3.126 26 H -0.271 1.271 27 H -0.280 1.280 28 H -0.264 1.264 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.163 0.837 33 H 0.407 0.593 34 H 0.403 0.597 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.073 0.927 38 H 0.151 0.849 39 H 0.176 0.824 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.050 0.950 44 H 0.045 0.955 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.371 24.713 -5.813 29.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.037 4.037 3 C -0.316 4.316 4 C 0.034 3.966 5 N -0.293 5.293 6 C 0.416 3.584 7 O -0.442 6.442 8 N -0.393 5.393 9 C 0.141 3.859 10 H 0.128 0.872 11 C -0.217 4.217 12 C -0.098 4.098 13 C -0.290 4.290 14 C -0.091 4.091 15 N -0.157 5.157 16 C -0.040 4.040 17 N -0.114 5.114 18 N -0.153 5.153 19 N -0.101 5.101 20 C 0.113 3.887 21 C -0.577 4.577 22 H 0.099 0.901 23 C -0.126 4.126 24 N -0.525 5.525 25 Si 0.700 3.300 26 H -0.197 1.197 27 H -0.206 1.206 28 H -0.189 1.189 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.181 0.819 33 H 0.241 0.759 34 H 0.238 0.762 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.169 0.831 39 H 0.193 0.807 40 H 0.093 0.907 41 H 0.106 0.894 42 H 0.109 0.891 43 H 0.067 0.933 44 H 0.063 0.937 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 14.883 22.826 -5.961 27.894 hybrid contribution 0.096 0.262 -0.142 0.313 sum 14.978 23.088 -6.104 28.190 Atomic orbital electron populations 1.20345 0.87864 1.02642 1.03404 1.21049 0.94865 0.86998 1.00820 1.21257 0.89622 0.99873 1.20862 1.18652 0.86649 0.89161 1.02099 1.41391 1.07583 1.03752 1.76620 1.15563 0.84667 0.80364 0.77850 1.90861 1.23439 1.73420 1.56477 1.45014 1.08088 1.05752 1.80494 1.19076 0.92670 0.77578 0.96619 0.87215 1.22175 1.02951 1.01596 0.94965 1.22354 0.93642 0.94793 0.98987 1.21322 0.97787 0.99297 1.10571 1.22551 0.92374 0.92941 1.01204 1.48478 1.08977 1.13330 1.44941 1.21880 0.75374 1.04644 1.02142 1.77195 1.00382 1.15528 1.18251 1.77255 0.99363 1.08505 1.30160 1.48467 1.01195 1.06925 1.53537 1.19977 0.95247 0.73853 0.99629 1.21193 1.47085 0.98965 0.90451 0.90117 1.24816 0.94543 0.97471 0.95786 1.69882 1.45887 1.18070 1.18625 0.86885 0.78936 0.81450 0.82698 1.19679 1.20589 1.18870 0.90136 0.90662 0.91199 0.81945 0.75863 0.76246 0.91208 0.92350 0.90758 0.83080 0.80733 0.90702 0.89410 0.89146 0.93254 0.93729 0.92178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.44 10.11 36.00 0.36 -1.08 16 2 C 0.09 1.99 6.92 -82.28 -0.57 1.42 16 3 C -0.29 -5.98 9.52 -39.83 -0.38 -6.36 16 4 C 0.29 6.03 8.11 -154.35 -1.25 4.78 16 5 N -0.64 -10.61 5.46 -15.50 -0.08 -10.69 16 6 C 0.72 11.16 8.50 -86.92 -0.74 10.42 16 7 O -0.57 -10.35 13.13 5.29 0.07 -10.29 16 8 N -0.74 -8.77 5.07 -59.81 -0.30 -9.07 16 9 C 0.25 2.62 3.05 -69.08 -0.21 2.41 16 10 H 0.11 1.24 7.58 -51.93 -0.39 0.85 16 11 C -0.16 -1.47 9.47 37.16 0.35 -1.12 16 12 C 0.07 0.70 6.19 -82.40 -0.51 0.19 16 13 C -0.26 -2.13 10.74 -40.01 -0.43 -2.56 16 14 C 0.06 0.37 11.49 -17.22 -0.20 0.17 16 15 N -0.38 -2.98 4.01 -68.16 -0.27 -3.25 16 16 C 0.10 0.40 11.47 59.85 0.69 1.08 16 17 N -0.29 -3.07 11.81 33.67 0.40 -2.68 16 18 N -0.32 -7.55 12.59 31.44 0.40 -7.15 16 19 N -0.32 -7.58 3.59 -58.33 -0.21 -7.79 16 20 C 0.23 5.70 5.06 -5.19 -0.03 5.67 16 21 C -0.54 -15.33 9.94 -34.44 -0.34 -15.67 16 22 H 0.08 2.60 8.06 -52.49 -0.42 2.18 16 23 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 24 N -0.89 -26.67 13.96 55.43 0.77 -25.90 16 25 Si 0.87 20.43 27.47 -169.99 -4.67 15.76 16 26 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H -0.26 -5.77 6.54 56.52 0.37 -5.40 16 29 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.07 1.16 7.07 -51.93 -0.37 0.79 16 32 H 0.16 3.32 5.91 -52.49 -0.31 3.01 16 33 H 0.41 5.55 8.84 -40.82 -0.36 5.19 16 34 H 0.40 4.27 8.02 -40.82 -0.33 3.95 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 39 H 0.18 0.50 8.06 -52.48 -0.42 0.07 16 40 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 41 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 42 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.05 1.13 6.10 -51.93 -0.32 0.81 16 44 H 0.04 1.09 7.57 -51.93 -0.39 0.69 16 45 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 382.58 15.07 5.77 5.77 Total: -1.00 -36.62 382.58 -7.78 -44.40 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -6.29 Total: 9.45 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -3.35 Total: 1.45 kcal Atomic # 7 Polarization: -67.24 SS G_CDS: 0.70 Total: -66.54 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.07 Total: -10.29 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.67 Total: 15.76 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.62 -7.78 -44.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365496189.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.041 kcal (2) G-P(sol) polarization free energy of solvation -36.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds