Wall clock time and date at job start Tue Mar 31 2020 17:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35243 * 126.07106 * 2 1 4 4 C 1.40403 * 107.86626 * 180.02562 * 3 2 1 5 5 N 1.40200 * 125.97199 * 180.26329 * 4 3 2 6 6 C 1.34776 * 119.99633 * 359.71918 * 5 4 3 7 7 O 1.21588 * 120.00172 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99433 * 179.97438 * 6 5 4 9 9 C 1.46503 * 119.99920 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.46830 * 34.99632 * 9 8 6 11 11 C 1.53000 * 109.46960 * 275.00073 * 9 8 6 12 12 C 1.50700 * 109.47452 * 154.99703 * 9 8 6 13 13 C 1.39868 * 125.89892 * 204.71377 * 12 9 8 14 14 C 1.35324 * 107.91564 * 179.86604 * 13 12 9 15 15 N 1.34939 * 107.74771 * 0.39525 * 14 13 12 16 16 C 1.46501 * 126.03810 * 179.75071 * 15 14 13 17 17 N 1.30841 * 125.89785 * 25.02734 * 12 9 8 18 18 N 1.31214 * 108.05583 * 0.02562 * 4 3 2 19 19 N 1.34966 * 126.07014 * 180.02562 * 2 1 3 20 20 C 1.46501 * 125.97694 * 359.95591 * 19 2 1 21 21 C 1.50704 * 109.46910 * 270.00151 * 20 19 2 22 22 H 1.07999 * 119.99936 * 359.97438 * 21 20 19 23 23 C 1.37874 * 119.99785 * 179.97438 * 21 20 19 24 24 N 1.31520 * 119.99787 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 120.00248 * 0.02562 * 23 21 20 26 26 H 1.48505 * 109.46685 * 89.99909 * 25 23 21 27 27 H 1.48501 * 109.46910 * 209.99644 * 25 23 21 28 28 H 1.48493 * 109.47134 * 329.99767 * 25 23 21 29 29 H 1.09006 * 109.46874 * 269.97053 * 1 2 3 30 30 H 1.09001 * 109.47276 * 29.96714 * 1 2 3 31 31 H 1.09007 * 109.47592 * 149.97143 * 1 2 3 32 32 H 1.07997 * 126.06934 * 0.05241 * 3 2 1 33 33 H 0.97002 * 119.99888 * 179.71746 * 5 4 3 34 34 H 0.96998 * 120.00624 * 359.97438 * 8 6 5 35 35 H 1.08999 * 109.47062 * 179.97438 * 11 9 8 36 36 H 1.09001 * 109.46988 * 299.99462 * 11 9 8 37 37 H 1.08999 * 109.47530 * 59.99898 * 11 9 8 38 38 H 1.07996 * 126.04358 * 359.97438 * 13 12 9 39 39 H 1.08007 * 126.12265 * 180.14924 * 14 13 12 40 40 H 1.08999 * 109.46888 * 270.02236 * 16 15 14 41 41 H 1.09000 * 109.47228 * 30.02587 * 16 15 14 42 42 H 1.09001 * 109.46974 * 150.02472 * 16 15 14 43 43 H 1.09001 * 109.47134 * 29.99838 * 20 19 2 44 44 H 1.08997 * 109.47405 * 150.00333 * 20 19 2 45 45 H 0.97006 * 120.00070 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6370 0.6545 -0.0006 5 7 4.7738 1.4751 0.0044 6 6 4.6370 2.8159 0.0048 7 8 3.5277 3.3138 0.0012 8 7 5.7298 3.6046 0.0101 9 6 5.5812 5.0621 0.0110 10 1 4.7044 5.3375 0.5971 11 6 5.4103 5.5582 -1.4262 12 6 6.8087 5.6919 0.6173 13 6 6.8686 6.9478 1.2300 14 6 8.1407 7.1477 1.6462 15 7 8.8620 6.0608 1.3010 16 6 10.2904 5.8579 1.5556 17 7 8.0038 5.1607 0.6563 18 7 3.6336 -0.6576 -0.0015 19 7 2.3016 -1.0909 -0.0005 20 6 1.8500 -2.4846 -0.0002 21 6 1.6961 -2.9624 1.4208 22 1 1.9133 -2.2949 2.2415 23 6 1.2779 -4.2518 1.6730 24 7 1.1440 -4.6689 2.9131 25 14 0.9029 -5.4066 0.2534 26 1 2.1353 -6.1446 -0.1231 27 1 -0.1465 -6.3732 0.6657 28 1 0.4217 -4.6202 -0.9106 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3634 0.8903 -0.5133 31 1 -0.3634 -0.8898 -0.5143 32 1 1.9720 2.1211 0.0008 33 1 5.6587 1.0778 0.0077 34 1 6.6147 3.2074 0.0141 35 1 5.2993 6.6425 -1.4255 36 1 6.2871 5.2828 -2.0123 37 1 4.5224 5.1028 -1.8647 38 1 6.0449 7.6357 1.3512 39 1 8.5128 8.0225 2.1589 40 1 10.8675 6.2429 0.7149 41 1 10.5761 6.3865 2.4650 42 1 10.4902 4.7931 1.6762 43 1 0.8910 -2.5559 -0.5134 44 1 2.5843 -3.1046 -0.5144 45 1 0.8501 -5.5762 3.0906 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365496189.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:08 Heat of formation + Delta-G solvation = 112.360594 kcal Electronic energy + Delta-G solvation = -27339.276742 eV Core-core repulsion = 23395.018221 eV Total energy + Delta-G solvation = -3944.258521 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -42.38705 -42.15574 -40.93704 -37.22170 -36.14948 -35.24423 -34.01103 -33.15497 -32.77226 -31.28740 -31.01158 -28.88654 -27.85982 -27.48669 -25.12984 -24.24317 -22.86974 -22.11730 -21.34902 -20.99407 -20.63217 -19.22386 -19.13923 -17.90470 -17.65376 -17.17980 -16.82130 -16.39877 -16.24345 -16.17857 -15.74710 -15.50450 -14.94820 -14.82060 -14.57479 -14.52932 -14.30380 -13.87325 -13.84415 -13.73106 -13.57855 -13.38145 -13.27461 -13.17436 -12.90412 -12.83022 -12.56185 -12.32239 -12.22572 -11.81845 -11.69569 -11.57399 -11.42094 -11.14266 -10.88903 -10.43394 -10.15223 -9.57000 -9.48603 -9.03638 -8.39380 -6.50338 0.90881 0.98935 1.09797 1.36272 1.38362 1.48114 1.62269 1.66688 1.78165 2.07222 2.27589 2.38088 2.93024 3.08172 3.42500 3.84274 3.89721 4.12523 4.14142 4.25367 4.29090 4.42085 4.46398 4.53541 4.67835 4.72613 4.73304 4.76173 4.82464 4.83723 4.87652 4.90336 5.02039 5.05660 5.14072 5.19709 5.24900 5.25968 5.48666 5.62196 5.81779 5.90346 6.03113 6.17150 6.39557 6.53190 6.66609 6.73087 7.09039 7.13451 7.39451 8.77357 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.022055 B = 0.002108 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.234583 B =13276.802348 C =13953.545300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.090 3.910 3 C -0.296 4.296 4 C 0.294 3.706 5 N -0.638 5.638 6 C 0.716 3.284 7 O -0.593 6.593 8 N -0.719 5.719 9 C 0.246 3.754 10 H 0.101 0.899 11 C -0.148 4.148 12 C 0.054 3.946 13 C -0.280 4.280 14 C 0.065 3.935 15 N -0.379 5.379 16 C 0.092 3.908 17 N -0.326 5.326 18 N -0.359 5.359 19 N -0.343 5.343 20 C 0.241 3.759 21 C -0.549 4.549 22 H 0.022 0.978 23 C 0.020 3.980 24 N -0.938 5.938 25 Si 0.952 3.048 26 H -0.266 1.266 27 H -0.274 1.274 28 H -0.233 1.233 29 H 0.077 0.923 30 H 0.108 0.892 31 H 0.078 0.922 32 H 0.169 0.831 33 H 0.419 0.581 34 H 0.410 0.590 35 H 0.089 0.911 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.166 0.834 39 H 0.216 0.784 40 H 0.087 0.913 41 H 0.117 0.883 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.048 0.952 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.952 26.106 -7.335 30.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.040 4.040 3 C -0.327 4.327 4 C 0.039 3.961 5 N -0.289 5.289 6 C 0.416 3.584 7 O -0.470 6.470 8 N -0.375 5.375 9 C 0.140 3.860 10 H 0.118 0.882 11 C -0.208 4.208 12 C -0.112 4.112 13 C -0.309 4.309 14 C -0.081 4.081 15 N -0.161 5.161 16 C -0.047 4.047 17 N -0.150 5.150 18 N -0.190 5.190 19 N -0.126 5.126 20 C 0.121 3.879 21 C -0.587 4.587 22 H 0.041 0.959 23 C -0.180 4.180 24 N -0.577 5.577 25 Si 0.773 3.227 26 H -0.191 1.191 27 H -0.199 1.199 28 H -0.156 1.156 29 H 0.096 0.904 30 H 0.127 0.873 31 H 0.096 0.904 32 H 0.186 0.814 33 H 0.256 0.744 34 H 0.247 0.753 35 H 0.108 0.892 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.183 0.817 39 H 0.233 0.767 40 H 0.106 0.894 41 H 0.135 0.865 42 H 0.102 0.898 43 H 0.093 0.907 44 H 0.066 0.934 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 15.520 24.269 -7.493 29.766 hybrid contribution 0.067 0.024 0.469 0.474 sum 15.587 24.293 -7.024 29.706 Atomic orbital electron populations 1.20505 0.85075 1.04746 1.03799 1.21761 0.96734 0.86314 0.99207 1.21442 0.89810 1.00098 1.21310 1.18945 0.88042 0.88908 1.00194 1.41405 1.07140 1.03875 1.76510 1.15669 0.85109 0.80052 0.77609 1.90830 1.24739 1.73743 1.57735 1.44962 1.07390 1.06237 1.78956 1.19164 0.93088 0.76366 0.97392 0.88156 1.22087 1.02063 1.02719 0.93885 1.22289 0.93272 0.95752 0.99870 1.21627 0.99225 0.98997 1.11097 1.23200 0.91688 0.93390 0.99825 1.48832 1.10025 1.13178 1.44083 1.22196 0.73550 1.04914 1.04090 1.77102 1.00980 1.17153 1.19787 1.77166 0.99834 1.09762 1.32219 1.48411 1.01743 1.07060 1.55369 1.19785 0.96446 0.74650 0.96986 1.21256 1.47584 0.98714 0.91188 0.95928 1.25855 0.93767 0.99241 0.99107 1.70043 1.47048 1.18969 1.21601 0.85658 0.79007 0.78750 0.79257 1.19118 1.19897 1.15585 0.90426 0.87296 0.90361 0.81386 0.74405 0.75339 0.89201 0.92357 0.92334 0.81693 0.76730 0.89447 0.86484 0.89770 0.90696 0.93421 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.74 10.11 71.23 0.72 -2.02 16 2 C 0.09 3.80 6.92 41.38 0.29 4.09 16 3 C -0.30 -12.46 9.52 22.11 0.21 -12.25 16 4 C 0.29 12.48 8.11 133.31 1.08 13.56 16 5 N -0.64 -21.22 5.46 -321.23 -1.75 -22.97 16 6 C 0.72 22.45 8.50 179.06 1.52 23.97 16 7 O -0.59 -21.84 13.13 -3.99 -0.05 -21.89 16 8 N -0.72 -17.12 5.07 -461.41 -2.34 -19.46 16 9 C 0.25 5.16 3.05 44.24 0.14 5.30 16 10 H 0.10 2.29 7.58 -2.39 -0.02 2.27 16 11 C -0.15 -2.70 9.47 71.98 0.68 -2.02 16 12 C 0.05 1.05 6.19 43.10 0.27 1.32 16 13 C -0.28 -4.14 10.74 21.99 0.24 -3.91 16 14 C 0.07 0.70 11.49 83.54 0.96 1.66 16 15 N -0.38 -5.31 4.01 -369.56 -1.48 -6.79 16 16 C 0.09 0.53 11.47 127.77 1.47 1.99 16 17 N -0.33 -6.65 11.81 -47.38 -0.56 -7.20 16 18 N -0.36 -17.14 12.59 -54.43 -0.69 -17.82 16 19 N -0.34 -16.47 3.59 -338.44 -1.22 -17.68 16 20 C 0.24 11.75 5.06 85.63 0.43 12.18 16 21 C -0.55 -32.15 9.94 25.60 0.25 -31.89 16 22 H 0.02 1.54 8.06 -2.91 -0.02 1.51 16 23 C 0.02 1.13 5.47 84.65 0.46 1.59 16 24 N -0.94 -57.90 13.96 21.45 0.30 -57.60 16 25 Si 0.95 41.44 27.47 68.60 1.88 43.33 16 26 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 27 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 28 H -0.23 -8.93 6.54 99.48 0.65 -8.28 16 29 H 0.08 2.61 8.14 -2.38 -0.02 2.59 16 30 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 31 H 0.08 2.43 7.07 -2.38 -0.02 2.41 16 32 H 0.17 6.87 5.91 -2.91 -0.02 6.85 16 33 H 0.42 11.53 8.84 -92.71 -0.82 10.71 16 34 H 0.41 8.67 8.02 -92.71 -0.74 7.93 16 35 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 39 H 0.22 0.34 8.06 -2.91 -0.02 0.31 16 40 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 41 H 0.12 -0.03 8.14 -2.39 -0.02 -0.05 16 42 H 0.08 0.59 8.14 -2.39 -0.02 0.58 16 43 H 0.08 3.25 6.10 -2.39 -0.01 3.23 16 44 H 0.05 2.28 7.57 -2.39 -0.02 2.26 16 45 H 0.27 15.51 8.31 -92.70 -0.77 14.74 16 Total: -1.00 -82.84 382.58 2.23 -80.61 By element: Atomic # 1 Polarization: 34.48 SS G_CDS: -0.58 Total: 33.90 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: 8.72 Total: 13.59 kcal Atomic # 7 Polarization: -141.79 SS G_CDS: -7.74 Total: -149.53 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.05 Total: -21.89 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 1.88 Total: 43.33 kcal Total: -82.84 2.23 -80.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365496189.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.972 kcal (2) G-P(sol) polarization free energy of solvation -82.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds