Wall clock time and date at job start Tue Mar 31 2020 17:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.35242 * 126.06714 * 2 1 4 4 C 1.40403 * 107.86461 * 180.13980 * 3 2 1 5 5 N 1.40188 * 125.97468 * 179.83113 * 4 3 2 6 6 C 1.34779 * 120.00034 * 359.71983 * 5 4 3 7 7 O 1.21595 * 119.99842 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00093 * 180.02562 * 6 5 4 9 9 C 1.46504 * 120.00111 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.46891 * 325.00262 * 9 8 6 11 11 C 1.53006 * 109.46883 * 84.99828 * 9 8 6 12 12 C 1.50697 * 109.47650 * 205.00149 * 9 8 6 13 13 C 1.39861 * 125.90091 * 155.00346 * 12 9 8 14 14 C 1.35319 * 107.92163 * 179.97438 * 13 12 9 15 15 N 1.34952 * 107.74382 * 359.97438 * 14 13 12 16 16 C 1.46501 * 126.03525 * 179.97438 * 15 14 13 17 17 N 1.30838 * 125.89596 * 334.69112 * 12 9 8 18 18 N 1.31214 * 108.05313 * 359.56921 * 4 3 2 19 19 N 1.34961 * 126.06800 * 179.66427 * 2 1 3 20 20 C 1.46495 * 125.98175 * 359.97438 * 19 2 1 21 21 C 1.50694 * 109.47451 * 270.00516 * 20 19 2 22 22 H 1.07997 * 119.99938 * 359.97438 * 21 20 19 23 23 C 1.37874 * 120.00340 * 180.02562 * 21 20 19 24 24 N 1.31518 * 120.00344 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 120.00153 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.46892 * 90.00121 * 25 23 21 27 27 H 1.48499 * 109.47353 * 210.00358 * 25 23 21 28 28 H 1.48507 * 109.46887 * 330.00368 * 25 23 21 29 29 H 1.08996 * 109.46826 * 270.33713 * 1 2 3 30 30 H 1.08999 * 109.47060 * 30.33688 * 1 2 3 31 31 H 1.08996 * 109.46774 * 150.33963 * 1 2 3 32 32 H 1.07995 * 126.06968 * 359.97438 * 3 2 1 33 33 H 0.97003 * 120.00324 * 179.71832 * 5 4 3 34 34 H 0.97003 * 120.00265 * 359.97438 * 8 6 5 35 35 H 1.09001 * 109.46801 * 300.00349 * 11 9 8 36 36 H 1.09001 * 109.46998 * 59.99945 * 11 9 8 37 37 H 1.09000 * 109.47050 * 180.02562 * 11 9 8 38 38 H 1.07996 * 126.04081 * 359.97433 * 13 12 9 39 39 H 1.07995 * 126.12958 * 179.97438 * 14 13 12 40 40 H 1.08998 * 109.46928 * 90.00236 * 16 15 14 41 41 H 1.09000 * 109.47000 * 209.99889 * 16 15 14 42 42 H 1.09001 * 109.47367 * 330.00445 * 16 15 14 43 43 H 1.09004 * 109.47092 * 30.00246 * 20 19 2 44 44 H 1.08996 * 109.47248 * 149.99873 * 20 19 2 45 45 H 0.96998 * 120.00389 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6371 0.6546 -0.0033 5 7 4.7737 1.4751 -0.0077 6 6 4.6370 2.8159 -0.0148 7 8 3.5277 3.3139 -0.0179 8 7 5.7298 3.6047 -0.0196 9 6 5.5811 5.0622 -0.0279 10 1 4.7066 5.3348 -0.6187 11 6 5.4046 5.5650 1.4064 12 6 6.8110 5.6892 -0.6322 13 6 6.8721 6.9398 -1.2554 14 6 8.1469 7.1404 -1.6626 15 7 8.8671 6.0552 -1.3090 16 6 10.2964 5.8512 -1.5572 17 7 8.0073 5.1601 -0.6595 18 7 3.6337 -0.6575 0.0042 19 7 2.3017 -1.0909 0.0064 20 6 1.8502 -2.4845 0.0151 21 6 1.6957 -2.9537 1.4388 22 1 1.9126 -2.2812 2.2555 23 6 1.2786 -4.2418 1.6988 24 7 1.1433 -4.6512 2.9413 25 14 0.9040 -5.4054 0.2862 26 1 2.1369 -6.1447 -0.0862 27 1 -0.1446 -6.3702 0.7043 28 1 0.4221 -4.6261 -0.8825 29 1 -0.3633 0.0060 1.0276 30 1 -0.3633 0.8869 -0.5191 31 1 -0.3633 -0.8930 -0.5085 32 1 1.9720 2.1211 -0.0004 33 1 5.6587 1.0779 -0.0056 34 1 6.6147 3.2075 -0.0175 35 1 4.5150 5.1114 1.8434 36 1 6.2790 5.2923 1.9972 37 1 5.2935 6.6493 1.4002 38 1 6.0475 7.6245 -1.3882 39 1 8.5209 8.0125 -2.1781 40 1 10.8704 6.2403 -0.7163 41 1 10.4967 4.7859 -1.6720 42 1 10.5855 6.3755 -2.4681 43 1 0.8913 -2.5590 -0.4980 44 1 2.5846 -3.1076 -0.4952 45 1 0.8494 -5.5573 3.1242 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365496190.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:20 Heat of formation + Delta-G solvation = 138.681528 kcal Electronic energy + Delta-G solvation = -27329.850731 eV Core-core repulsion = 23386.733571 eV Total energy + Delta-G solvation = -3943.117160 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 3.40 seconds Orbital eigenvalues (eV) -41.62599 -40.73554 -39.60462 -36.19606 -34.66950 -33.43810 -33.11351 -31.60644 -31.07752 -30.43289 -30.24489 -27.01773 -26.97466 -26.32175 -24.00753 -22.60584 -21.78610 -21.28310 -20.07335 -19.68025 -19.47126 -17.95800 -17.11718 -17.07129 -16.39758 -15.89923 -15.68996 -15.34500 -14.91370 -14.68587 -14.40321 -14.23144 -13.97653 -13.68660 -13.64989 -13.25655 -13.15276 -12.89945 -12.73390 -12.56965 -12.33286 -12.23181 -12.14318 -11.83628 -11.53752 -11.48726 -11.17685 -11.04292 -10.76372 -10.52535 -9.99798 -9.90593 -9.70556 -9.64231 -9.52696 -9.20470 -8.91835 -8.74531 -7.90433 -7.36328 -6.22425 -4.25053 1.49127 2.09063 2.29151 2.51729 2.65747 3.13801 3.18422 3.24371 3.25880 3.57264 3.86926 4.01485 4.24730 4.30404 4.41301 4.51059 4.68514 4.93767 4.97825 5.06185 5.09607 5.26928 5.37668 5.39655 5.51656 5.56940 5.68724 5.77748 5.90093 6.04600 6.10434 6.23801 6.26131 6.34890 6.43037 6.54333 6.54783 6.60777 6.67524 6.85272 7.14307 7.32740 7.33517 7.54249 7.93351 7.99869 8.36277 8.65834 8.67842 8.83796 9.32969 10.90127 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.024585 B = 0.002063 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.624820 B =13568.615533 C =14057.110982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.093 3.907 3 C -0.285 4.285 4 C 0.288 3.712 5 N -0.644 5.644 6 C 0.716 3.284 7 O -0.567 6.567 8 N -0.737 5.737 9 C 0.248 3.752 10 H 0.110 0.890 11 C -0.159 4.159 12 C 0.069 3.931 13 C -0.260 4.260 14 C 0.055 3.945 15 N -0.375 5.375 16 C 0.101 3.899 17 N -0.290 5.290 18 N -0.323 5.323 19 N -0.319 5.319 20 C 0.232 3.768 21 C -0.539 4.539 22 H 0.081 0.919 23 C 0.078 3.922 24 N -0.887 5.887 25 Si 0.874 3.126 26 H -0.271 1.271 27 H -0.280 1.280 28 H -0.264 1.264 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.163 0.837 33 H 0.407 0.593 34 H 0.403 0.597 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.151 0.849 39 H 0.175 0.825 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.050 0.950 44 H 0.045 0.955 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.374 24.644 -10.338 30.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.037 4.037 3 C -0.316 4.316 4 C 0.034 3.966 5 N -0.293 5.293 6 C 0.416 3.584 7 O -0.442 6.442 8 N -0.394 5.394 9 C 0.141 3.859 10 H 0.128 0.872 11 C -0.218 4.218 12 C -0.097 4.097 13 C -0.290 4.290 14 C -0.091 4.091 15 N -0.157 5.157 16 C -0.040 4.040 17 N -0.113 5.113 18 N -0.153 5.153 19 N -0.101 5.101 20 C 0.113 3.887 21 C -0.577 4.577 22 H 0.099 0.901 23 C -0.126 4.126 24 N -0.524 5.524 25 Si 0.700 3.300 26 H -0.197 1.197 27 H -0.206 1.206 28 H -0.189 1.189 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.181 0.819 33 H 0.241 0.759 34 H 0.238 0.762 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.169 0.831 39 H 0.193 0.807 40 H 0.093 0.907 41 H 0.108 0.892 42 H 0.106 0.894 43 H 0.067 0.933 44 H 0.063 0.937 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 14.885 22.762 -9.943 28.957 hybrid contribution 0.101 0.260 -0.766 0.816 sum 14.986 23.022 -10.709 29.483 Atomic orbital electron populations 1.20344 0.87863 1.02641 1.03404 1.21051 0.94866 0.87001 1.00821 1.21256 0.89622 0.99872 1.20855 1.18649 0.86649 0.89166 1.02098 1.41388 1.07582 1.03753 1.76619 1.15565 0.84668 0.80363 0.77851 1.90863 1.23436 1.73424 1.56479 1.45016 1.08085 1.05756 1.80493 1.19077 0.92549 0.77582 0.96708 0.87237 1.22185 1.03076 1.01556 0.94965 1.22360 0.93622 0.94876 0.98891 1.21320 0.97685 0.99409 1.10563 1.22549 0.92362 0.92947 1.01245 1.48485 1.08939 1.13600 1.44725 1.21878 0.75355 1.04608 1.02195 1.77201 1.00301 1.15742 1.18084 1.77255 0.99366 1.08512 1.30152 1.48465 1.01196 1.06932 1.53529 1.19973 0.95242 0.73852 0.99634 1.21189 1.47117 0.98985 0.90400 0.90104 1.24814 0.94547 0.97493 0.95759 1.69877 1.45865 1.18298 1.18401 0.86887 0.78933 0.81493 0.82663 1.19686 1.20589 1.18880 0.90125 0.90670 0.91205 0.81946 0.75865 0.76248 0.90679 0.92299 0.91210 0.83085 0.80747 0.90689 0.89161 0.89422 0.93261 0.93746 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.44 10.11 36.01 0.36 -1.08 16 2 C 0.09 1.98 6.92 -82.28 -0.57 1.41 16 3 C -0.29 -5.98 9.52 -39.83 -0.38 -6.36 16 4 C 0.29 6.03 8.11 -154.36 -1.25 4.78 16 5 N -0.64 -10.60 5.45 -15.51 -0.08 -10.68 16 6 C 0.72 11.15 8.50 -86.92 -0.74 10.41 16 7 O -0.57 -10.35 13.13 5.28 0.07 -10.28 16 8 N -0.74 -8.76 5.07 -59.81 -0.30 -9.07 16 9 C 0.25 2.62 3.05 -69.08 -0.21 2.41 16 10 H 0.11 1.22 7.58 -51.93 -0.39 0.82 16 11 C -0.16 -1.54 9.47 37.16 0.35 -1.19 16 12 C 0.07 0.69 6.19 -82.41 -0.51 0.18 16 13 C -0.26 -2.08 10.74 -40.02 -0.43 -2.51 16 14 C 0.05 0.36 11.49 -17.22 -0.20 0.16 16 15 N -0.38 -2.91 4.01 -68.16 -0.27 -3.18 16 16 C 0.10 0.38 11.47 59.85 0.69 1.06 16 17 N -0.29 -3.03 11.81 33.67 0.40 -2.63 16 18 N -0.32 -7.54 12.59 31.44 0.40 -7.15 16 19 N -0.32 -7.58 3.59 -58.33 -0.21 -7.79 16 20 C 0.23 5.70 5.06 -5.20 -0.03 5.67 16 21 C -0.54 -15.32 9.94 -34.44 -0.34 -15.66 16 22 H 0.08 2.60 8.06 -52.49 -0.42 2.18 16 23 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 24 N -0.89 -26.65 13.96 55.43 0.77 -25.87 16 25 Si 0.87 20.43 27.47 -169.99 -4.67 15.76 16 26 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H -0.26 -5.78 6.54 56.52 0.37 -5.41 16 29 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.07 1.16 7.07 -51.93 -0.37 0.79 16 32 H 0.16 3.32 5.91 -52.49 -0.31 3.01 16 33 H 0.41 5.54 8.84 -40.82 -0.36 5.18 16 34 H 0.40 4.27 8.02 -40.82 -0.33 3.94 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.18 0.46 8.06 -52.49 -0.42 0.03 16 40 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 41 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.09 0.11 8.14 -51.93 -0.42 -0.32 16 43 H 0.05 1.13 6.10 -51.93 -0.32 0.81 16 44 H 0.04 1.08 7.57 -51.93 -0.39 0.69 16 45 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 382.58 15.07 5.77 5.77 Total: -1.00 -36.58 382.58 -7.78 -44.35 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -6.29 Total: 9.39 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -3.35 Total: 1.40 kcal Atomic # 7 Polarization: -67.07 SS G_CDS: 0.70 Total: -66.38 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.07 Total: -10.28 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.67 Total: 15.76 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.58 -7.78 -44.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365496190.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.034 kcal (2) G-P(sol) polarization free energy of solvation -36.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.40 seconds