Wall clock time and date at job start Tue Mar 31 2020 17:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.35242 * 126.06714 * 2 1 4 4 C 1.40403 * 107.86461 * 180.13980 * 3 2 1 5 5 N 1.40188 * 125.97468 * 179.83113 * 4 3 2 6 6 C 1.34779 * 120.00034 * 359.71983 * 5 4 3 7 7 O 1.21595 * 119.99842 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00093 * 180.02562 * 6 5 4 9 9 C 1.46504 * 120.00111 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.46891 * 325.00262 * 9 8 6 11 11 C 1.53006 * 109.46883 * 84.99828 * 9 8 6 12 12 C 1.50697 * 109.47650 * 205.00149 * 9 8 6 13 13 C 1.39861 * 125.90091 * 155.00346 * 12 9 8 14 14 C 1.35319 * 107.92163 * 179.97438 * 13 12 9 15 15 N 1.34952 * 107.74382 * 359.97438 * 14 13 12 16 16 C 1.46501 * 126.03525 * 179.97438 * 15 14 13 17 17 N 1.30838 * 125.89596 * 334.69112 * 12 9 8 18 18 N 1.31214 * 108.05313 * 359.56921 * 4 3 2 19 19 N 1.34961 * 126.06800 * 179.66427 * 2 1 3 20 20 C 1.46495 * 125.98175 * 359.97438 * 19 2 1 21 21 C 1.50694 * 109.47451 * 270.00516 * 20 19 2 22 22 H 1.07997 * 119.99938 * 359.97438 * 21 20 19 23 23 C 1.37874 * 120.00340 * 180.02562 * 21 20 19 24 24 N 1.31518 * 120.00344 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 120.00153 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.46892 * 90.00121 * 25 23 21 27 27 H 1.48499 * 109.47353 * 210.00358 * 25 23 21 28 28 H 1.48507 * 109.46887 * 330.00368 * 25 23 21 29 29 H 1.08996 * 109.46826 * 270.33713 * 1 2 3 30 30 H 1.08999 * 109.47060 * 30.33688 * 1 2 3 31 31 H 1.08996 * 109.46774 * 150.33963 * 1 2 3 32 32 H 1.07995 * 126.06968 * 359.97438 * 3 2 1 33 33 H 0.97003 * 120.00324 * 179.71832 * 5 4 3 34 34 H 0.97003 * 120.00265 * 359.97438 * 8 6 5 35 35 H 1.09001 * 109.46801 * 300.00349 * 11 9 8 36 36 H 1.09001 * 109.46998 * 59.99945 * 11 9 8 37 37 H 1.09000 * 109.47050 * 180.02562 * 11 9 8 38 38 H 1.07996 * 126.04081 * 359.97433 * 13 12 9 39 39 H 1.07995 * 126.12958 * 179.97438 * 14 13 12 40 40 H 1.08998 * 109.46928 * 90.00236 * 16 15 14 41 41 H 1.09000 * 109.47000 * 209.99889 * 16 15 14 42 42 H 1.09001 * 109.47367 * 330.00445 * 16 15 14 43 43 H 1.09004 * 109.47092 * 30.00246 * 20 19 2 44 44 H 1.08996 * 109.47248 * 149.99873 * 20 19 2 45 45 H 0.96998 * 120.00389 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6371 0.6546 -0.0033 5 7 4.7737 1.4751 -0.0077 6 6 4.6370 2.8159 -0.0148 7 8 3.5277 3.3139 -0.0179 8 7 5.7298 3.6047 -0.0196 9 6 5.5811 5.0622 -0.0279 10 1 4.7066 5.3348 -0.6187 11 6 5.4046 5.5650 1.4064 12 6 6.8110 5.6892 -0.6322 13 6 6.8721 6.9398 -1.2554 14 6 8.1469 7.1404 -1.6626 15 7 8.8671 6.0552 -1.3090 16 6 10.2964 5.8512 -1.5572 17 7 8.0073 5.1601 -0.6595 18 7 3.6337 -0.6575 0.0042 19 7 2.3017 -1.0909 0.0064 20 6 1.8502 -2.4845 0.0151 21 6 1.6957 -2.9537 1.4388 22 1 1.9126 -2.2812 2.2555 23 6 1.2786 -4.2418 1.6988 24 7 1.1433 -4.6512 2.9413 25 14 0.9040 -5.4054 0.2862 26 1 2.1369 -6.1447 -0.0862 27 1 -0.1446 -6.3702 0.7043 28 1 0.4221 -4.6261 -0.8825 29 1 -0.3633 0.0060 1.0276 30 1 -0.3633 0.8869 -0.5191 31 1 -0.3633 -0.8930 -0.5085 32 1 1.9720 2.1211 -0.0004 33 1 5.6587 1.0779 -0.0056 34 1 6.6147 3.2075 -0.0175 35 1 4.5150 5.1114 1.8434 36 1 6.2790 5.2923 1.9972 37 1 5.2935 6.6493 1.4002 38 1 6.0475 7.6245 -1.3882 39 1 8.5209 8.0125 -2.1781 40 1 10.8704 6.2403 -0.7163 41 1 10.4967 4.7859 -1.6720 42 1 10.5855 6.3755 -2.4681 43 1 0.8913 -2.5590 -0.4980 44 1 2.5846 -3.1076 -0.4952 45 1 0.8494 -5.5573 3.1242 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365496190.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:15 Heat of formation + Delta-G solvation = 112.433151 kcal Electronic energy + Delta-G solvation = -27330.988946 eV Core-core repulsion = 23386.733571 eV Total energy + Delta-G solvation = -3944.255375 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 3.29 seconds Orbital eigenvalues (eV) -42.38668 -42.15370 -40.93656 -37.22264 -36.14950 -35.24343 -34.00876 -33.15444 -32.77172 -31.29159 -31.00750 -28.88679 -27.86026 -27.48708 -25.13144 -24.24347 -22.87013 -22.11333 -21.34882 -20.99382 -20.63008 -19.22235 -19.13862 -17.90182 -17.65128 -17.18383 -16.78551 -16.43893 -16.36314 -16.00165 -15.78386 -15.50660 -14.92053 -14.86293 -14.59872 -14.50856 -14.28837 -13.88161 -13.84507 -13.72000 -13.59976 -13.33612 -13.26789 -13.20685 -12.92574 -12.81516 -12.56254 -12.33353 -12.22381 -11.81719 -11.68983 -11.57351 -11.42059 -11.14283 -10.88743 -10.43291 -10.15140 -9.56997 -9.48288 -9.03624 -8.39131 -6.50088 0.90673 0.99747 1.09640 1.36290 1.38373 1.48094 1.62639 1.66141 1.79025 2.07036 2.27673 2.38189 2.93166 3.08091 3.42751 3.84214 3.90073 4.12497 4.14483 4.25312 4.28320 4.42061 4.46711 4.53535 4.67167 4.73078 4.73143 4.75853 4.82513 4.83602 4.88116 4.89821 5.01983 5.05724 5.14079 5.19621 5.24970 5.25243 5.48552 5.62455 5.81707 5.90435 6.03216 6.17746 6.39626 6.53459 6.66814 6.73352 7.09005 7.13646 7.39384 8.77546 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.024585 B = 0.002063 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.624820 B =13568.615533 C =14057.110982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.090 3.910 3 C -0.296 4.296 4 C 0.294 3.706 5 N -0.638 5.638 6 C 0.716 3.284 7 O -0.593 6.593 8 N -0.719 5.719 9 C 0.247 3.753 10 H 0.103 0.897 11 C -0.151 4.151 12 C 0.055 3.945 13 C -0.279 4.279 14 C 0.066 3.934 15 N -0.379 5.379 16 C 0.092 3.908 17 N -0.326 5.326 18 N -0.359 5.359 19 N -0.343 5.343 20 C 0.241 3.759 21 C -0.549 4.549 22 H 0.023 0.977 23 C 0.020 3.980 24 N -0.938 5.938 25 Si 0.952 3.048 26 H -0.266 1.266 27 H -0.274 1.274 28 H -0.233 1.233 29 H 0.077 0.923 30 H 0.108 0.892 31 H 0.077 0.923 32 H 0.169 0.831 33 H 0.419 0.581 34 H 0.410 0.590 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.090 0.910 38 H 0.166 0.834 39 H 0.216 0.784 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.118 0.882 43 H 0.075 0.925 44 H 0.048 0.952 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.976 26.049 -12.929 32.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.040 4.040 3 C -0.327 4.327 4 C 0.039 3.961 5 N -0.289 5.289 6 C 0.416 3.584 7 O -0.471 6.471 8 N -0.375 5.375 9 C 0.141 3.859 10 H 0.121 0.879 11 C -0.210 4.210 12 C -0.111 4.111 13 C -0.309 4.309 14 C -0.081 4.081 15 N -0.161 5.161 16 C -0.048 4.048 17 N -0.151 5.151 18 N -0.190 5.190 19 N -0.126 5.126 20 C 0.121 3.879 21 C -0.587 4.587 22 H 0.041 0.959 23 C -0.180 4.180 24 N -0.576 5.576 25 Si 0.773 3.227 26 H -0.191 1.191 27 H -0.199 1.199 28 H -0.156 1.156 29 H 0.096 0.904 30 H 0.127 0.873 31 H 0.096 0.904 32 H 0.186 0.814 33 H 0.256 0.744 34 H 0.247 0.753 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.109 0.891 38 H 0.183 0.817 39 H 0.233 0.767 40 H 0.104 0.896 41 H 0.103 0.897 42 H 0.136 0.864 43 H 0.093 0.907 44 H 0.066 0.934 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 15.543 24.216 -12.536 31.387 hybrid contribution 0.067 0.020 0.117 0.136 sum 15.609 24.236 -12.419 31.389 Atomic orbital electron populations 1.20504 0.85071 1.04725 1.03818 1.21763 0.96734 0.86316 0.99204 1.21441 0.89814 1.00099 1.21310 1.18942 0.88041 0.88912 1.00191 1.41402 1.07140 1.03876 1.76507 1.15672 0.85111 0.80052 0.77606 1.90832 1.24736 1.73748 1.57735 1.44964 1.07390 1.06242 1.78946 1.19152 0.93190 0.76367 0.97206 0.87890 1.22105 1.01915 1.02737 0.94213 1.22261 0.93185 0.95866 0.99812 1.21623 0.99145 0.99066 1.11043 1.23202 0.91656 0.93367 0.99843 1.48837 1.09981 1.13445 1.43839 1.22196 0.73500 1.04925 1.04129 1.77109 1.00908 1.17415 1.19627 1.77166 0.99837 1.09768 1.32212 1.48409 1.01744 1.07069 1.55357 1.19781 0.96433 0.74658 0.96990 1.21252 1.47609 0.98703 0.91167 0.95896 1.25853 0.93777 0.99309 0.99038 1.70038 1.47022 1.19200 1.21362 0.85660 0.79004 0.78737 0.79278 1.19126 1.19899 1.15609 0.90399 0.87314 0.90374 0.81390 0.74403 0.75339 0.92595 0.92531 0.89116 0.81661 0.76699 0.89613 0.89721 0.86369 0.90709 0.93444 0.91761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.74 10.11 71.24 0.72 -2.02 16 2 C 0.09 3.80 6.92 41.39 0.29 4.09 16 3 C -0.30 -12.47 9.52 22.11 0.21 -12.26 16 4 C 0.29 12.48 8.11 133.31 1.08 13.56 16 5 N -0.64 -21.22 5.45 -321.23 -1.75 -22.98 16 6 C 0.72 22.45 8.50 179.05 1.52 23.97 16 7 O -0.59 -21.85 13.13 -4.01 -0.05 -21.90 16 8 N -0.72 -17.12 5.07 -461.39 -2.34 -19.46 16 9 C 0.25 5.18 3.05 44.25 0.14 5.32 16 10 H 0.10 2.29 7.58 -2.39 -0.02 2.28 16 11 C -0.15 -2.90 9.47 71.98 0.68 -2.22 16 12 C 0.05 1.04 6.19 43.10 0.27 1.31 16 13 C -0.28 -3.97 10.74 21.99 0.24 -3.73 16 14 C 0.07 0.67 11.49 83.54 0.96 1.63 16 15 N -0.38 -5.09 4.01 -369.56 -1.48 -6.58 16 16 C 0.09 0.48 11.47 127.77 1.47 1.94 16 17 N -0.33 -6.53 11.81 -47.39 -0.56 -7.09 16 18 N -0.36 -17.14 12.59 -54.44 -0.69 -17.83 16 19 N -0.34 -16.47 3.59 -338.46 -1.22 -17.68 16 20 C 0.24 11.75 5.06 85.63 0.43 12.19 16 21 C -0.55 -32.12 9.94 25.60 0.25 -31.87 16 22 H 0.02 1.56 8.06 -2.91 -0.02 1.53 16 23 C 0.02 1.13 5.47 84.65 0.46 1.59 16 24 N -0.94 -57.85 13.96 21.45 0.30 -57.55 16 25 Si 0.95 41.45 27.47 68.60 1.88 43.33 16 26 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 27 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 28 H -0.23 -8.94 6.54 99.48 0.65 -8.29 16 29 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 30 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 31 H 0.08 2.43 7.07 -2.39 -0.02 2.41 16 32 H 0.17 6.87 5.91 -2.91 -0.02 6.86 16 33 H 0.42 11.53 8.84 -92.71 -0.82 10.71 16 34 H 0.41 8.67 8.02 -92.71 -0.74 7.93 16 35 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.09 1.34 8.14 -2.39 -0.02 1.33 16 38 H 0.17 1.69 8.06 -2.91 -0.02 1.66 16 39 H 0.22 0.18 8.06 -2.91 -0.02 0.16 16 40 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 41 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.12 -0.12 8.14 -2.39 -0.02 -0.14 16 43 H 0.08 3.24 6.10 -2.38 -0.01 3.23 16 44 H 0.05 2.27 7.57 -2.39 -0.02 2.25 16 45 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -82.82 382.58 2.23 -80.59 By element: Atomic # 1 Polarization: 34.23 SS G_CDS: -0.58 Total: 33.65 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: 8.72 Total: 13.50 kcal Atomic # 7 Polarization: -141.43 SS G_CDS: -7.74 Total: -149.17 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -0.05 Total: -21.90 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 1.88 Total: 43.33 kcal Total: -82.82 2.23 -80.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365496190.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.020 kcal (2) G-P(sol) polarization free energy of solvation -82.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.29 seconds