Wall clock time and date at job start Tue Mar 31 2020 17:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38041 * 126.28952 * 2 1 4 4 C 1.47426 * 126.41525 * 359.97438 * 3 2 1 5 5 O 1.21601 * 120.00001 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99972 * 179.97438 * 4 3 2 7 7 C 1.46506 * 119.99873 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47289 * 300.00195 * 7 6 4 9 9 C 1.52997 * 109.46940 * 60.00321 * 7 6 4 10 10 C 1.50699 * 109.46928 * 180.02562 * 7 6 4 11 11 C 1.35352 * 126.75381 * 179.71630 * 10 7 6 12 12 N 1.35305 * 106.17918 * 179.85140 * 11 10 7 13 13 C 1.46498 * 125.87391 * 180.11296 * 12 11 10 14 14 N 1.28720 * 108.26249 * 0.41522 * 12 11 10 15 15 N 1.28632 * 110.17773 * 359.73612 * 14 12 11 16 16 C 1.41292 * 107.16964 * 180.24885 * 3 2 1 17 17 N 1.30450 * 108.02099 * 359.61571 * 16 3 2 18 18 N 1.34260 * 126.29169 * 180.02562 * 2 1 3 19 19 C 1.46504 * 125.75341 * 359.95665 * 18 2 1 20 20 C 1.50701 * 109.47126 * 89.99922 * 19 18 2 21 21 H 1.08000 * 119.99830 * 0.02562 * 20 19 18 22 22 C 1.37871 * 119.99920 * 179.97438 * 20 19 18 23 23 N 1.31514 * 120.00106 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99957 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47222 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.46951 * 120.00280 * 24 22 20 27 27 H 1.48498 * 109.47227 * 240.00356 * 24 22 20 28 28 H 1.09001 * 109.47460 * 89.97472 * 1 2 3 29 29 H 1.09006 * 109.46711 * 209.97523 * 1 2 3 30 30 H 1.08995 * 109.47077 * 329.96914 * 1 2 3 31 31 H 0.96995 * 120.00018 * 0.27658 * 6 4 3 32 32 H 1.09001 * 109.46832 * 60.00146 * 8 7 6 33 33 H 1.09002 * 109.47153 * 179.97438 * 8 7 6 34 34 H 1.08996 * 109.46952 * 300.00127 * 8 7 6 35 35 H 1.09000 * 109.47140 * 59.99990 * 9 7 6 36 36 H 1.09001 * 109.47230 * 179.97438 * 9 7 6 37 37 H 1.09001 * 109.47375 * 299.99972 * 9 7 6 38 38 H 1.07997 * 126.90850 * 359.97438 * 11 10 7 39 39 H 1.08999 * 109.47538 * 270.32991 * 13 12 11 40 40 H 1.09010 * 109.46586 * 30.32729 * 13 12 11 41 41 H 1.08996 * 109.47577 * 150.32579 * 13 12 11 42 42 H 1.07998 * 125.98593 * 179.74105 * 16 3 2 43 43 H 1.08996 * 109.46810 * 210.00283 * 19 18 2 44 44 H 1.08996 * 109.47171 * 329.99861 * 19 18 2 45 45 H 0.96998 * 120.00512 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5203 -0.0005 5 8 0.6996 2.7877 -0.0015 6 7 2.7999 3.5107 0.0001 7 6 2.3643 4.9095 -0.0010 8 6 1.5254 5.1815 -1.2513 9 6 1.5227 5.1825 1.2472 10 6 3.5715 5.8115 -0.0007 11 6 3.5713 7.1650 -0.0069 12 7 4.8706 7.5423 -0.0004 13 6 5.3641 8.9217 -0.0013 14 7 5.5989 6.4809 0.0001 15 7 4.8543 5.4320 -0.0001 16 6 3.6590 0.6499 -0.0059 17 7 3.6341 -0.6544 -0.0008 18 7 2.3017 -1.0822 -0.0005 19 6 1.8501 -2.4759 -0.0002 20 6 1.6944 -2.9537 -1.4209 21 1 1.9106 -2.2862 -2.2419 22 6 1.2769 -4.2434 -1.6726 23 7 1.0140 -5.0564 -0.6728 24 14 1.0845 -4.8359 -3.4336 25 1 1.4404 -3.7374 -4.3672 26 1 1.9839 -5.9943 -3.6671 27 1 -0.3232 -5.2474 -3.6665 28 1 -0.3634 0.0005 -1.0276 29 1 -0.3633 -0.8903 0.5135 30 1 -0.3633 0.8897 0.5143 31 1 3.7461 3.2974 -0.0032 32 1 0.6522 4.5290 -1.2519 33 1 1.2010 6.2221 -1.2518 34 1 2.1250 4.9869 -2.1405 35 1 2.1204 4.9888 2.1379 36 1 1.1990 6.2233 1.2466 37 1 0.6495 4.5301 1.2466 38 1 2.7076 7.8134 -0.0133 39 1 5.4867 9.2631 -1.0291 40 1 4.6482 9.5639 0.5119 41 1 6.3242 8.9645 0.5128 42 1 4.5448 1.2677 -0.0113 43 1 2.5850 -3.0958 0.5132 44 1 0.8918 -2.5471 0.5142 45 1 0.7199 -5.9636 -0.8498 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411447417.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:53 Heat of formation + Delta-G solvation = 132.947428 kcal Electronic energy + Delta-G solvation = -28198.086965 eV Core-core repulsion = 24254.721156 eV Total energy + Delta-G solvation = -3943.365809 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.60977 -40.71119 -39.26980 -36.27750 -34.63685 -33.85423 -32.42370 -31.78806 -30.99583 -30.01713 -28.39649 -27.30081 -27.20304 -26.51896 -24.08768 -23.32943 -22.31284 -21.89678 -20.46459 -19.13758 -19.01629 -17.86164 -16.94431 -16.93755 -16.69702 -15.75227 -15.16994 -14.81363 -14.75761 -14.49494 -14.17747 -14.10575 -13.89933 -13.79161 -13.53556 -13.19725 -13.13305 -12.62930 -12.42692 -12.37086 -12.06322 -12.02388 -11.94640 -11.69854 -11.44624 -11.35708 -11.32551 -11.18347 -11.03820 -10.86409 -10.40767 -10.31862 -10.04557 -9.84932 -9.56536 -9.15568 -8.80524 -8.67043 -8.48797 -7.80671 -6.29087 -4.36361 1.24734 1.97949 2.21579 2.30179 2.91014 3.20323 3.22930 3.28314 3.35159 3.61426 3.83252 4.02452 4.19217 4.28645 4.44273 4.45503 4.74614 4.82619 4.94594 5.05421 5.09967 5.24063 5.32286 5.34598 5.50049 5.56550 5.68399 5.76776 5.83417 5.87806 5.88711 6.07547 6.18430 6.19379 6.28413 6.31717 6.50704 6.65138 6.77846 6.89243 6.97518 7.26446 7.62270 7.82828 7.86534 7.93745 8.19543 8.48599 8.69350 8.74213 9.30300 10.79166 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.023622 B = 0.002400 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.050563 B =11662.658893 C =11981.562135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.164 3.836 3 C -0.332 4.332 4 C 0.610 3.390 5 O -0.556 6.556 6 N -0.723 5.723 7 C 0.269 3.731 8 C -0.160 4.160 9 C -0.159 4.159 10 C -0.016 4.016 11 C -0.040 4.040 12 N -0.295 5.295 13 C 0.081 3.919 14 N -0.082 5.082 15 N -0.261 5.261 16 C 0.060 3.940 17 N -0.297 5.297 18 N -0.315 5.315 19 C 0.251 3.749 20 C -0.537 4.537 21 H 0.066 0.934 22 C 0.066 3.934 23 N -0.890 5.890 24 Si 0.908 3.092 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.407 0.593 32 H 0.092 0.908 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.092 0.908 38 H 0.192 0.808 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.176 0.824 43 H 0.056 0.944 44 H 0.056 0.944 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.734 28.814 2.818 29.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.027 3.973 3 C -0.347 4.347 4 C 0.401 3.599 5 O -0.436 6.436 6 N -0.376 5.376 7 C 0.180 3.820 8 C -0.219 4.219 9 C -0.218 4.218 10 C -0.154 4.154 11 C -0.191 4.191 12 N -0.088 5.088 13 C -0.060 4.060 14 N -0.062 5.062 15 N -0.127 5.127 16 C -0.127 4.127 17 N -0.117 5.117 18 N -0.092 5.092 19 C 0.134 3.866 20 C -0.575 4.575 21 H 0.084 0.916 22 C -0.137 4.137 23 N -0.528 5.528 24 Si 0.734 3.266 25 H -0.195 1.195 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.112 0.888 31 H 0.243 0.757 32 H 0.111 0.889 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.111 0.889 38 H 0.209 0.791 39 H 0.110 0.890 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.193 0.807 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.015 27.038 2.883 27.486 hybrid contribution -0.835 0.873 -0.981 1.556 sum 3.180 27.911 1.902 28.156 Atomic orbital electron populations 1.20556 0.86843 1.03705 1.03827 1.21457 0.94896 0.86537 0.94427 1.19664 0.93109 0.92487 1.29439 1.17214 0.84898 0.83720 0.74067 1.90604 1.16688 1.84231 1.52075 1.45739 1.10551 1.04058 1.77233 1.18315 0.87647 0.79203 0.96817 1.22278 1.01473 1.02227 0.95909 1.22268 1.01406 1.02225 0.95890 1.22000 0.94131 0.92541 1.06763 1.23183 0.88549 0.96665 1.10706 1.47251 1.05233 1.09052 1.47283 1.22279 1.02754 0.75868 1.05082 1.78334 1.20383 0.87820 1.19618 1.74965 1.01104 1.20163 1.16502 1.23785 0.96547 0.92556 0.99847 1.77148 0.98500 1.12325 1.23699 1.49353 1.02555 1.08244 1.49049 1.19835 0.96368 0.71039 0.99387 1.21296 1.47075 0.98087 0.91080 0.91614 1.24925 0.94540 0.96023 0.98259 1.69923 1.44729 1.07116 1.31018 0.86274 0.77902 0.78836 0.83545 1.19527 1.20607 1.20584 0.89936 0.91033 0.88767 0.75698 0.88896 0.92124 0.92497 0.92524 0.92125 0.88922 0.79125 0.89003 0.88237 0.87948 0.80672 0.92564 0.92594 0.92220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.66 9.57 36.01 0.34 -1.32 16 2 C 0.16 3.42 7.01 -81.60 -0.57 2.85 16 3 C -0.33 -6.32 6.13 -105.07 -0.64 -6.96 16 4 C 0.61 10.29 7.23 -12.52 -0.09 10.19 16 5 O -0.56 -9.86 11.04 5.28 0.06 -9.80 16 6 N -0.72 -10.18 5.09 -49.75 -0.25 -10.44 16 7 C 0.27 3.13 0.97 -132.97 -0.13 3.00 16 8 C -0.16 -1.77 8.28 37.16 0.31 -1.46 16 9 C -0.16 -1.71 8.29 37.16 0.31 -1.40 16 10 C -0.02 -0.17 5.72 -82.78 -0.47 -0.65 16 11 C -0.04 -0.31 11.04 -17.05 -0.19 -0.49 16 12 N -0.29 -2.27 3.74 -68.06 -0.25 -2.52 16 13 C 0.08 0.18 11.39 59.85 0.68 0.87 16 14 N -0.08 -0.96 13.16 60.35 0.79 -0.16 16 15 N -0.26 -3.42 11.41 33.29 0.38 -3.04 16 16 C 0.06 1.13 11.50 -16.98 -0.20 0.93 16 17 N -0.30 -6.70 12.50 30.86 0.39 -6.31 16 18 N -0.32 -7.34 3.56 -57.77 -0.21 -7.55 16 19 C 0.25 6.38 5.97 -5.19 -0.03 6.35 16 20 C -0.54 -14.73 9.39 -34.44 -0.32 -15.06 16 21 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 22 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 23 N -0.89 -24.95 13.29 55.43 0.74 -24.21 16 24 Si 0.91 21.16 29.54 -169.99 -5.02 16.14 16 25 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 28 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 29 H 0.07 1.28 7.05 -51.93 -0.37 0.91 16 30 H 0.09 1.60 6.50 -51.93 -0.34 1.27 16 31 H 0.41 5.63 6.66 -40.82 -0.27 5.36 16 32 H 0.09 1.22 6.16 -51.93 -0.32 0.90 16 33 H 0.06 0.48 8.03 -51.93 -0.42 0.07 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.47 8.04 -51.93 -0.42 0.05 16 37 H 0.09 1.19 6.16 -51.93 -0.32 0.87 16 38 H 0.19 0.70 8.06 -52.49 -0.42 0.28 16 39 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 40 H 0.10 -0.04 8.14 -51.92 -0.42 -0.46 16 41 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 42 H 0.18 2.61 7.50 -52.49 -0.39 2.22 16 43 H 0.06 1.52 8.14 -51.93 -0.42 1.10 16 44 H 0.06 1.41 7.02 -51.93 -0.36 1.04 16 45 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 376.89 15.07 5.68 5.68 Total: -1.00 -33.99 376.89 -4.94 -38.93 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -6.14 Total: 4.74 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -1.10 Total: -1.44 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: 1.58 Total: -54.24 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.06 Total: -9.80 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.99 -4.94 -38.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411447417.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.878 kcal (2) G-P(sol) polarization free energy of solvation -33.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds