Wall clock time and date at job start Tue Mar 31 2020 17:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38041 * 126.28952 * 2 1 4 4 C 1.47426 * 126.41525 * 359.97438 * 3 2 1 5 5 O 1.21601 * 120.00001 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99972 * 179.97438 * 4 3 2 7 7 C 1.46506 * 119.99873 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47289 * 300.00195 * 7 6 4 9 9 C 1.52997 * 109.46940 * 60.00321 * 7 6 4 10 10 C 1.50699 * 109.46928 * 180.02562 * 7 6 4 11 11 C 1.35352 * 126.75381 * 179.71630 * 10 7 6 12 12 N 1.35305 * 106.17918 * 179.85140 * 11 10 7 13 13 C 1.46498 * 125.87391 * 180.11296 * 12 11 10 14 14 N 1.28720 * 108.26249 * 0.41522 * 12 11 10 15 15 N 1.28632 * 110.17773 * 359.73612 * 14 12 11 16 16 C 1.41292 * 107.16964 * 180.24885 * 3 2 1 17 17 N 1.30450 * 108.02099 * 359.61571 * 16 3 2 18 18 N 1.34260 * 126.29169 * 180.02562 * 2 1 3 19 19 C 1.46504 * 125.75341 * 359.95665 * 18 2 1 20 20 C 1.50701 * 109.47126 * 89.99922 * 19 18 2 21 21 H 1.08000 * 119.99830 * 0.02562 * 20 19 18 22 22 C 1.37871 * 119.99920 * 179.97438 * 20 19 18 23 23 N 1.31514 * 120.00106 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99957 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47222 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.46951 * 120.00280 * 24 22 20 27 27 H 1.48498 * 109.47227 * 240.00356 * 24 22 20 28 28 H 1.09001 * 109.47460 * 89.97472 * 1 2 3 29 29 H 1.09006 * 109.46711 * 209.97523 * 1 2 3 30 30 H 1.08995 * 109.47077 * 329.96914 * 1 2 3 31 31 H 0.96995 * 120.00018 * 0.27658 * 6 4 3 32 32 H 1.09001 * 109.46832 * 60.00146 * 8 7 6 33 33 H 1.09002 * 109.47153 * 179.97438 * 8 7 6 34 34 H 1.08996 * 109.46952 * 300.00127 * 8 7 6 35 35 H 1.09000 * 109.47140 * 59.99990 * 9 7 6 36 36 H 1.09001 * 109.47230 * 179.97438 * 9 7 6 37 37 H 1.09001 * 109.47375 * 299.99972 * 9 7 6 38 38 H 1.07997 * 126.90850 * 359.97438 * 11 10 7 39 39 H 1.08999 * 109.47538 * 270.32991 * 13 12 11 40 40 H 1.09010 * 109.46586 * 30.32729 * 13 12 11 41 41 H 1.08996 * 109.47577 * 150.32579 * 13 12 11 42 42 H 1.07998 * 125.98593 * 179.74105 * 16 3 2 43 43 H 1.08996 * 109.46810 * 210.00283 * 19 18 2 44 44 H 1.08996 * 109.47171 * 329.99861 * 19 18 2 45 45 H 0.96998 * 120.00512 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5203 -0.0005 5 8 0.6996 2.7877 -0.0015 6 7 2.7999 3.5107 0.0001 7 6 2.3643 4.9095 -0.0010 8 6 1.5254 5.1815 -1.2513 9 6 1.5227 5.1825 1.2472 10 6 3.5715 5.8115 -0.0007 11 6 3.5713 7.1650 -0.0069 12 7 4.8706 7.5423 -0.0004 13 6 5.3641 8.9217 -0.0013 14 7 5.5989 6.4809 0.0001 15 7 4.8543 5.4320 -0.0001 16 6 3.6590 0.6499 -0.0059 17 7 3.6341 -0.6544 -0.0008 18 7 2.3017 -1.0822 -0.0005 19 6 1.8501 -2.4759 -0.0002 20 6 1.6944 -2.9537 -1.4209 21 1 1.9106 -2.2862 -2.2419 22 6 1.2769 -4.2434 -1.6726 23 7 1.0140 -5.0564 -0.6728 24 14 1.0845 -4.8359 -3.4336 25 1 1.4404 -3.7374 -4.3672 26 1 1.9839 -5.9943 -3.6671 27 1 -0.3232 -5.2474 -3.6665 28 1 -0.3634 0.0005 -1.0276 29 1 -0.3633 -0.8903 0.5135 30 1 -0.3633 0.8897 0.5143 31 1 3.7461 3.2974 -0.0032 32 1 0.6522 4.5290 -1.2519 33 1 1.2010 6.2221 -1.2518 34 1 2.1250 4.9869 -2.1405 35 1 2.1204 4.9888 2.1379 36 1 1.1990 6.2233 1.2466 37 1 0.6495 4.5301 1.2466 38 1 2.7076 7.8134 -0.0133 39 1 5.4867 9.2631 -1.0291 40 1 4.6482 9.5639 0.5119 41 1 6.3242 8.9645 0.5128 42 1 4.5448 1.2677 -0.0113 43 1 2.5850 -3.0958 0.5132 44 1 0.8918 -2.5471 0.5142 45 1 0.7199 -5.9636 -0.8498 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411447417.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:51 Heat of formation + Delta-G solvation = 108.761431 kcal Electronic energy + Delta-G solvation = -28199.135749 eV Core-core repulsion = 24254.721156 eV Total energy + Delta-G solvation = -3944.414593 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 2.59 seconds Orbital eigenvalues (eV) -44.27567 -42.29724 -40.51161 -37.31251 -35.80967 -35.25429 -34.00746 -33.16197 -32.53606 -30.88184 -29.08007 -28.74831 -28.14166 -28.08187 -25.47493 -24.75362 -23.41967 -22.75286 -21.67946 -20.52664 -20.32361 -18.88581 -18.81146 -17.97842 -17.51661 -16.93792 -16.55696 -16.38393 -16.14050 -15.59737 -15.43485 -15.29403 -14.90076 -14.70539 -14.61680 -14.26461 -14.03285 -13.86949 -13.80945 -13.65267 -13.54637 -13.27825 -13.05895 -12.94817 -12.80558 -12.78855 -12.69885 -12.34197 -12.23661 -12.22811 -11.89401 -11.82421 -11.65412 -11.00826 -10.75936 -10.51271 -10.35618 -10.23983 -9.88368 -9.40837 -8.37444 -6.53606 0.65612 0.73168 1.32984 1.36320 1.38783 1.47109 1.50078 1.57343 1.69363 2.31570 2.36097 2.60420 2.94435 3.13709 3.76787 3.78041 3.82786 3.96362 4.08211 4.19636 4.22873 4.27333 4.31733 4.39297 4.52955 4.65800 4.68523 4.71868 4.80193 4.82359 4.83032 4.89876 4.95450 5.00523 5.07808 5.13218 5.21070 5.39699 5.44203 5.50188 5.64765 5.69765 5.73164 5.75585 6.08277 6.55809 6.69691 6.86433 7.17308 7.39576 7.52509 8.70717 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.023622 B = 0.002400 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.050563 B =11662.658893 C =11981.562135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.147 3.853 3 C -0.331 4.331 4 C 0.612 3.388 5 O -0.564 6.564 6 N -0.715 5.715 7 C 0.266 3.734 8 C -0.155 4.155 9 C -0.154 4.154 10 C -0.040 4.040 11 C -0.017 4.017 12 N -0.285 5.285 13 C 0.068 3.932 14 N -0.118 5.118 15 N -0.302 5.302 16 C 0.074 3.926 17 N -0.337 5.337 18 N -0.338 5.338 19 C 0.267 3.733 20 C -0.554 4.554 21 H 0.050 0.950 22 C 0.023 3.977 23 N -0.916 5.916 24 Si 0.973 3.027 25 H -0.274 1.274 26 H -0.274 1.274 27 H -0.266 1.266 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.106 0.894 31 H 0.408 0.592 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.044 0.956 35 H 0.047 0.953 36 H 0.097 0.903 37 H 0.069 0.931 38 H 0.237 0.763 39 H 0.108 0.892 40 H 0.134 0.866 41 H 0.104 0.896 42 H 0.213 0.787 43 H 0.030 0.970 44 H 0.053 0.947 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.252 32.251 2.125 32.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.012 3.988 3 C -0.346 4.346 4 C 0.401 3.599 5 O -0.445 6.445 6 N -0.366 5.366 7 C 0.179 3.821 8 C -0.214 4.214 9 C -0.212 4.212 10 C -0.180 4.180 11 C -0.169 4.169 12 N -0.078 5.078 13 C -0.070 4.070 14 N -0.098 5.098 15 N -0.167 5.167 16 C -0.112 4.112 17 N -0.157 5.157 18 N -0.115 5.115 19 C 0.148 3.852 20 C -0.592 4.592 21 H 0.068 0.932 22 C -0.178 4.178 23 N -0.555 5.555 24 Si 0.796 3.204 25 H -0.198 1.198 26 H -0.199 1.199 27 H -0.191 1.191 28 H 0.102 0.898 29 H 0.088 0.912 30 H 0.125 0.875 31 H 0.244 0.756 32 H 0.088 0.912 33 H 0.116 0.884 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.116 0.884 37 H 0.088 0.912 38 H 0.253 0.747 39 H 0.126 0.874 40 H 0.152 0.848 41 H 0.123 0.877 42 H 0.229 0.771 43 H 0.048 0.952 44 H 0.071 0.929 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.568 30.524 2.201 30.811 hybrid contribution -0.637 0.031 -0.725 0.966 sum 2.931 30.556 1.476 30.731 Atomic orbital electron populations 1.20562 0.85397 1.04199 1.03997 1.21996 0.96065 0.86448 0.94337 1.20020 0.92938 0.93537 1.28105 1.16928 0.85122 0.83314 0.74534 1.90602 1.17065 1.84249 1.52629 1.45736 1.10087 1.05017 1.75791 1.18501 0.88471 0.77637 0.97538 1.22225 1.00075 1.04037 0.95020 1.22212 1.00031 1.04026 0.94945 1.21988 0.93186 0.93920 1.08920 1.23788 0.89622 0.95846 1.07653 1.47680 1.05199 1.09949 1.45014 1.22777 1.03978 0.73526 1.06760 1.78250 1.21185 0.88711 1.21608 1.74883 1.02259 1.21637 1.17935 1.24374 0.97837 0.91673 0.97363 1.77089 0.98549 1.14220 1.25863 1.49118 1.03283 1.07845 1.51304 1.19380 0.95302 0.72311 0.98184 1.21406 1.47780 0.98475 0.91504 0.93160 1.25736 0.93860 0.95912 1.02330 1.70001 1.44914 1.07584 1.32952 0.85285 0.78515 0.78121 0.78435 1.19842 1.19896 1.19136 0.89821 0.91159 0.87505 0.75644 0.91237 0.88390 0.93651 0.93424 0.88435 0.91170 0.74659 0.87383 0.84771 0.87690 0.77078 0.95205 0.92925 0.91647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.10 9.57 71.24 0.68 -2.42 16 2 C 0.15 6.29 7.01 42.14 0.30 6.59 16 3 C -0.33 -12.70 6.13 -20.15 -0.12 -12.82 16 4 C 0.61 20.44 7.23 86.66 0.63 21.06 16 5 O -0.56 -19.80 11.04 -4.03 -0.04 -19.84 16 6 N -0.71 -19.63 5.09 -429.56 -2.19 -21.81 16 7 C 0.27 5.70 0.97 2.85 0.00 5.71 16 8 C -0.16 -3.09 8.28 71.98 0.60 -2.49 16 9 C -0.15 -2.96 8.29 71.98 0.60 -2.36 16 10 C -0.04 -0.79 5.72 41.60 0.24 -0.56 16 11 C -0.02 -0.19 11.04 83.49 0.92 0.73 16 12 N -0.28 -3.53 3.74 -369.24 -1.38 -4.91 16 13 C 0.07 0.06 11.39 127.77 1.46 1.51 16 14 N -0.12 -2.62 13.16 37.02 0.49 -2.13 16 15 N -0.30 -7.64 11.41 -48.60 -0.55 -8.19 16 16 C 0.07 2.81 11.50 85.65 0.99 3.80 16 17 N -0.34 -15.67 12.50 -56.27 -0.70 -16.37 16 18 N -0.34 -16.37 3.56 -336.69 -1.20 -17.57 16 19 C 0.27 14.22 5.97 85.63 0.51 14.73 16 20 C -0.55 -31.31 9.39 25.60 0.24 -31.07 16 21 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 22 C 0.02 1.26 5.46 84.65 0.46 1.72 16 23 N -0.92 -52.11 13.29 21.45 0.28 -51.82 16 24 Si 0.97 43.60 29.54 68.60 2.03 45.63 16 25 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 26 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 27 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 28 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 29 H 0.07 2.58 7.05 -2.38 -0.02 2.56 16 30 H 0.11 3.64 6.50 -2.39 -0.02 3.63 16 31 H 0.41 11.09 6.66 -92.71 -0.62 10.48 16 32 H 0.07 1.74 6.16 -2.39 -0.01 1.73 16 33 H 0.10 1.17 8.03 -2.39 -0.02 1.15 16 34 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.10 1.11 8.04 -2.39 -0.02 1.09 16 37 H 0.07 1.70 6.16 -2.39 -0.01 1.69 16 38 H 0.24 0.24 8.06 -2.91 -0.02 0.22 16 39 H 0.11 -0.20 8.14 -2.39 -0.02 -0.22 16 40 H 0.13 -0.79 8.14 -2.38 -0.02 -0.81 16 41 H 0.10 0.07 8.14 -2.39 -0.02 0.05 16 42 H 0.21 6.13 7.50 -2.91 -0.02 6.11 16 43 H 0.03 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.05 2.78 7.02 -2.39 -0.02 2.77 16 45 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -77.16 376.89 4.63 -72.53 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: 0.41 Total: 20.36 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: 7.49 Total: 4.13 kcal Atomic # 7 Polarization: -117.55 SS G_CDS: -5.25 Total: -122.81 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.04 Total: -19.84 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -77.16 4.63 -72.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411447417.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.295 kcal (2) G-P(sol) polarization free energy of solvation -77.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.60 seconds