Wall clock time and date at job start Tue Mar 31 2020 17:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38051 * 126.28797 * 2 1 4 4 C 1.47426 * 126.41495 * 359.97438 * 3 2 1 5 5 O 1.21599 * 120.00170 * 0.02562 * 4 3 2 6 6 N 1.34776 * 119.99739 * 180.02562 * 4 3 2 7 7 C 1.46509 * 119.99799 * 180.02562 * 6 4 3 8 8 H 1.08999 * 109.47054 * 34.99851 * 7 6 4 9 9 C 1.52999 * 109.46973 * 274.99714 * 7 6 4 10 10 C 1.52998 * 109.46658 * 154.99842 * 7 6 4 11 11 C 1.50695 * 109.47516 * 294.99551 * 10 7 6 12 12 C 1.35348 * 126.75026 * 124.99909 * 11 10 7 13 13 N 1.35317 * 106.17735 * 179.78015 * 12 11 10 14 14 C 1.46497 * 125.87017 * 180.21003 * 13 12 11 15 15 N 1.28721 * 108.26102 * 0.22816 * 13 12 11 16 16 N 1.28636 * 110.17709 * 0.02562 * 15 13 12 17 17 C 1.41284 * 107.16908 * 180.26356 * 3 2 1 18 18 N 1.30454 * 108.02160 * 359.58946 * 17 3 2 19 19 N 1.34257 * 126.29398 * 180.02562 * 2 1 3 20 20 C 1.46495 * 125.75175 * 359.97438 * 19 2 1 21 21 C 1.50701 * 109.47473 * 89.99947 * 20 19 2 22 22 H 1.07996 * 119.99755 * 359.97438 * 21 20 19 23 23 C 1.37878 * 119.99941 * 179.97438 * 21 20 19 24 24 N 1.31510 * 120.00238 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99527 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47362 * 60.00271 * 25 23 21 27 27 H 1.48503 * 109.47051 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.47227 * 299.99780 * 25 23 21 29 29 H 1.09000 * 109.47280 * 89.97480 * 1 2 3 30 30 H 1.09006 * 109.47012 * 209.97692 * 1 2 3 31 31 H 1.09003 * 109.47079 * 329.97411 * 1 2 3 32 32 H 0.97000 * 120.00074 * 0.02562 * 6 4 3 33 33 H 1.09007 * 109.47146 * 60.00110 * 9 7 6 34 34 H 1.09004 * 109.46888 * 179.97438 * 9 7 6 35 35 H 1.08999 * 109.47312 * 300.00517 * 9 7 6 36 36 H 1.09009 * 109.46553 * 175.00292 * 10 7 6 37 37 H 1.08993 * 109.47496 * 55.00272 * 10 7 6 38 38 H 1.08002 * 126.91502 * 0.05047 * 12 11 10 39 39 H 1.09001 * 109.47369 * 90.00120 * 14 13 12 40 40 H 1.08998 * 109.46801 * 210.00191 * 14 13 12 41 41 H 1.08996 * 109.46736 * 329.99602 * 14 13 12 42 42 H 1.08001 * 125.99016 * 179.73116 * 17 3 2 43 43 H 1.09007 * 109.47147 * 210.00138 * 20 19 2 44 44 H 1.09001 * 109.47260 * 329.99424 * 20 19 2 45 45 H 0.96993 * 119.99902 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1128 0.0000 4 6 1.8857 2.5203 -0.0005 5 8 0.6995 2.7878 -0.0006 6 7 2.7998 3.5107 -0.0010 7 6 2.3642 4.9096 -0.0009 8 1 1.4527 5.0062 0.5888 9 6 2.0921 5.3590 -1.4379 10 6 3.4611 5.7852 0.6082 11 6 3.6436 5.4245 2.0599 12 6 4.7973 5.0555 2.6639 13 7 4.4888 4.8339 3.9626 14 6 5.4261 4.4169 5.0085 15 7 3.2302 5.0520 4.1212 16 7 2.6965 5.4025 3.0044 17 6 3.6590 0.6500 -0.0062 18 7 3.6340 -0.6543 -0.0008 19 7 2.3017 -1.0821 -0.0005 20 6 1.8501 -2.4757 -0.0006 21 6 1.6947 -2.9534 -1.4214 22 1 1.9104 -2.2855 -2.2422 23 6 1.2773 -4.2431 -1.6733 24 7 1.0142 -5.0562 -0.6738 25 14 1.0840 -4.8349 -3.4346 26 1 2.3893 -4.7369 -4.1358 27 1 0.6264 -6.2476 -3.4347 28 1 0.0820 -3.9905 -4.1334 29 1 -0.3634 0.0005 -1.0277 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3633 0.8898 0.5142 32 1 3.7461 3.2974 -0.0013 33 1 1.3106 4.7351 -1.8719 34 1 1.7676 6.3996 -1.4378 35 1 3.0036 5.2622 -2.0277 36 1 3.1753 6.8340 0.5276 37 1 4.3962 5.6212 0.0728 38 1 5.7695 4.9616 2.2030 39 1 5.8567 5.2986 5.4831 40 1 4.8973 3.8242 5.7549 41 1 6.2215 3.8176 4.5655 42 1 4.5448 1.2678 -0.0119 43 1 2.5850 -3.0958 0.5129 44 1 0.8917 -2.5471 0.5137 45 1 0.7202 -5.9634 -0.8511 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412545728.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:55 Heat of formation + Delta-G solvation = 95.863975 kcal Electronic energy + Delta-G solvation = -28139.423960 eV Core-core repulsion = 24194.450091 eV Total energy + Delta-G solvation = -3944.973868 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 2.50 seconds Orbital eigenvalues (eV) -44.11034 -42.30137 -40.23255 -37.24469 -35.82552 -35.38564 -33.98186 -33.16384 -32.69364 -31.52307 -29.08263 -28.84219 -28.14736 -27.70024 -25.44698 -23.92135 -23.01391 -22.70518 -21.66537 -21.08475 -20.45501 -18.87439 -18.49536 -17.97931 -17.43719 -16.96455 -16.86333 -16.40462 -16.15089 -15.71234 -15.54871 -15.28936 -15.10283 -14.69206 -14.45871 -14.21300 -14.07307 -13.96187 -13.71725 -13.64947 -13.57687 -13.22141 -13.17986 -13.08960 -12.96361 -12.70435 -12.68963 -12.38353 -12.30718 -12.00892 -11.88466 -11.72940 -11.47336 -10.92195 -10.77129 -10.72141 -10.26872 -10.09719 -9.94543 -9.41406 -8.38657 -6.55517 0.69798 0.76174 1.33963 1.38636 1.38764 1.47350 1.62602 1.65457 1.68782 2.31551 2.45507 2.61101 2.93397 3.49269 3.72950 3.73744 3.78413 4.03196 4.11136 4.15029 4.24309 4.34184 4.37673 4.45556 4.49672 4.52444 4.61166 4.65868 4.76977 4.78449 4.87293 4.89121 4.95064 5.03915 5.07524 5.14824 5.24316 5.37642 5.46299 5.47919 5.67005 5.73507 5.75166 5.78947 6.03388 6.53330 6.72597 6.86564 7.15635 7.48178 7.62754 8.69183 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.016752 B = 0.002715 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.041346 B =10309.757524 C =11159.513377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.140 3.860 3 C -0.330 4.330 4 C 0.602 3.398 5 O -0.588 6.588 6 N -0.705 5.705 7 C 0.150 3.850 8 H 0.055 0.945 9 C -0.157 4.157 10 C -0.030 4.030 11 C -0.036 4.036 12 C -0.033 4.033 13 N -0.291 5.291 14 C 0.070 3.930 15 N -0.138 5.138 16 N -0.309 5.309 17 C 0.081 3.919 18 N -0.334 5.334 19 N -0.338 5.338 20 C 0.268 3.732 21 C -0.557 4.557 22 H 0.053 0.947 23 C 0.024 3.976 24 N -0.918 5.918 25 Si 0.972 3.028 26 H -0.271 1.271 27 H -0.273 1.273 28 H -0.267 1.267 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.410 0.590 33 H 0.031 0.969 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.109 0.891 37 H 0.128 0.872 38 H 0.239 0.761 39 H 0.110 0.890 40 H 0.094 0.906 41 H 0.130 0.870 42 H 0.229 0.771 43 H 0.032 0.968 44 H 0.047 0.953 45 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.709 23.269 4.861 27.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.004 3.996 3 C -0.345 4.345 4 C 0.391 3.609 5 O -0.469 6.469 6 N -0.356 5.356 7 C 0.046 3.954 8 H 0.073 0.927 9 C -0.215 4.215 10 C -0.069 4.069 11 C -0.176 4.176 12 C -0.185 4.185 13 N -0.085 5.085 14 C -0.069 4.069 15 N -0.117 5.117 16 N -0.174 5.174 17 C -0.106 4.106 18 N -0.154 5.154 19 N -0.115 5.115 20 C 0.149 3.851 21 C -0.595 4.595 22 H 0.071 0.929 23 C -0.178 4.178 24 N -0.555 5.555 25 Si 0.796 3.204 26 H -0.196 1.196 27 H -0.197 1.197 28 H -0.192 1.192 29 H 0.101 0.899 30 H 0.088 0.912 31 H 0.115 0.885 32 H 0.247 0.753 33 H 0.050 0.950 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.127 0.873 37 H 0.146 0.854 38 H 0.255 0.745 39 H 0.129 0.871 40 H 0.113 0.887 41 H 0.148 0.852 42 H 0.245 0.755 43 H 0.050 0.950 44 H 0.064 0.936 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 12.353 22.038 6.022 25.972 hybrid contribution 0.359 -0.416 -1.018 1.156 sum 12.712 21.622 5.004 25.577 Atomic orbital electron populations 1.20511 0.86315 1.03685 1.03808 1.21932 0.95803 0.86976 0.94857 1.20036 0.93455 0.93137 1.27859 1.17168 0.85242 0.83992 0.74513 1.90675 1.18350 1.84741 1.53162 1.45563 1.09485 1.05202 1.75377 1.20880 0.97927 0.79621 0.97001 0.92671 1.22132 1.02368 1.01852 0.95142 1.20314 1.00601 1.00388 0.85611 1.22418 0.90013 1.06647 0.98507 1.24130 1.03413 1.06702 0.84222 1.47650 1.07870 1.42534 1.10414 1.22673 0.91395 1.03642 0.89231 1.78276 0.92535 1.20430 1.20411 1.75003 1.28483 1.17299 0.96658 1.24485 0.97475 0.91549 0.97082 1.77063 0.98168 1.14409 1.25760 1.49069 1.03417 1.07623 1.51425 1.19341 0.95130 0.72399 0.98194 1.21367 1.48104 0.98496 0.91503 0.92921 1.25751 0.93744 0.95900 1.02394 1.69989 1.44752 1.07623 1.33182 0.85391 0.78911 0.77657 0.78490 1.19581 1.19727 1.19234 0.89897 0.91235 0.88530 0.75350 0.94955 0.89854 0.90088 0.87324 0.85384 0.74493 0.87121 0.88707 0.85157 0.75468 0.95031 0.93565 0.91627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.39 9.57 71.24 0.68 -2.71 16 2 C 0.14 6.04 7.01 42.14 0.30 6.33 16 3 C -0.33 -12.21 6.13 -20.15 -0.12 -12.33 16 4 C 0.60 20.47 7.78 86.66 0.67 21.14 16 5 O -0.59 -24.13 14.50 -4.03 -0.06 -24.19 16 6 N -0.70 -16.10 4.78 -445.80 -2.13 -18.23 16 7 C 0.15 3.03 2.56 44.99 0.12 3.15 16 8 H 0.05 1.61 7.57 -2.39 -0.02 1.59 16 9 C -0.16 -2.71 9.48 71.98 0.68 -2.02 16 10 C -0.03 -0.36 5.34 29.85 0.16 -0.20 16 11 C -0.04 -0.66 6.23 41.59 0.26 -0.40 16 12 C -0.03 -0.39 11.54 83.49 0.96 0.58 16 13 N -0.29 -4.67 3.74 -369.25 -1.38 -6.05 16 14 C 0.07 0.39 11.39 127.77 1.46 1.85 16 15 N -0.14 -3.66 13.17 37.02 0.49 -3.17 16 16 N -0.31 -8.72 12.39 -48.60 -0.60 -9.32 16 17 C 0.08 2.66 11.50 85.65 0.99 3.65 16 18 N -0.33 -14.37 12.50 -56.27 -0.70 -15.07 16 19 N -0.34 -16.00 3.56 -336.69 -1.20 -17.20 16 20 C 0.27 14.17 5.97 85.63 0.51 14.68 16 21 C -0.56 -31.13 9.39 25.60 0.24 -30.89 16 22 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 23 C 0.02 1.28 5.46 84.66 0.46 1.75 16 24 N -0.92 -52.00 13.29 21.45 0.28 -51.72 16 25 Si 0.97 42.97 29.54 68.60 2.03 45.00 16 26 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 27 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 28 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 29 H 0.08 3.24 8.14 -2.39 -0.02 3.23 16 30 H 0.07 2.73 7.05 -2.38 -0.02 2.72 16 31 H 0.10 3.76 6.50 -2.39 -0.02 3.74 16 32 H 0.41 6.41 7.56 -92.71 -0.70 5.71 16 33 H 0.03 0.78 8.14 -2.38 -0.02 0.76 16 34 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 35 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.11 1.06 8.14 -2.38 -0.02 1.04 16 37 H 0.13 0.46 8.12 -2.39 -0.02 0.44 16 38 H 0.24 0.12 8.06 -2.91 -0.02 0.10 16 39 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 40 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.13 -0.08 8.14 -2.39 -0.02 -0.10 16 42 H 0.23 4.52 7.50 -2.91 -0.02 4.49 16 43 H 0.03 1.78 8.14 -2.38 -0.02 1.76 16 44 H 0.05 2.48 7.02 -2.39 -0.02 2.46 16 45 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -84.84 386.89 4.40 -80.43 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: 0.32 Total: 14.95 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: 7.36 Total: 4.56 kcal Atomic # 7 Polarization: -115.51 SS G_CDS: -5.25 Total: -120.76 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -0.06 Total: -24.19 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -84.84 4.40 -80.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412545728.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.297 kcal (2) G-P(sol) polarization free energy of solvation -84.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.50 seconds