Wall clock time and date at job start Tue Mar 31 2020 18:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47172 * 2 1 4 4 N 1.30524 * 126.34287 * 270.03946 * 3 2 1 5 5 N 1.28595 * 109.67201 * 179.97438 * 4 3 2 6 6 C 1.30526 * 109.67330 * 359.72135 * 5 4 3 7 7 N 1.35489 * 126.34983 * 89.99336 * 3 2 1 8 8 C 1.46494 * 126.98091 * 0.04023 * 7 3 2 9 9 C 1.53004 * 109.47266 * 84.99914 * 8 7 3 10 10 N 1.46500 * 109.47413 * 180.02562 * 9 8 7 11 11 C 1.34770 * 120.00063 * 179.97438 * 10 9 8 12 12 O 1.21603 * 120.00516 * 359.97438 * 11 10 9 13 13 C 1.47431 * 119.99929 * 179.97438 * 11 10 9 14 14 C 1.41293 * 126.41437 * 0.04241 * 13 11 10 15 15 N 1.30448 * 108.02361 * 179.70632 * 14 13 11 16 16 N 1.39944 * 108.89724 * 0.40720 * 15 14 13 17 17 C 1.46491 * 125.75406 * 179.85047 * 16 15 14 18 18 C 1.50702 * 109.46957 * 269.68786 * 17 16 15 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99942 * 179.72213 * 18 17 16 21 21 N 1.31514 * 119.99985 * 180.27663 * 20 18 17 22 22 Si 1.86800 * 119.99777 * 0.28166 * 20 18 17 23 23 H 1.48498 * 109.47109 * 89.99834 * 22 20 18 24 24 H 1.48507 * 109.46754 * 209.99574 * 22 20 18 25 25 H 1.48498 * 109.47278 * 329.99405 * 22 20 18 26 26 C 1.34263 * 108.48668 * 359.58371 * 16 15 14 27 27 C 1.50694 * 126.28562 * 180.22136 * 26 16 15 28 28 H 1.09000 * 109.47363 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47372 * 300.00728 * 1 2 3 30 30 H 1.09003 * 109.46833 * 60.00624 * 1 2 3 31 31 H 1.08998 * 109.47372 * 239.99272 * 2 1 3 32 32 H 1.09003 * 109.46833 * 119.99376 * 2 1 3 33 33 H 1.07996 * 126.34424 * 180.30036 * 6 5 4 34 34 H 1.09000 * 109.47126 * 324.99771 * 8 7 3 35 35 H 1.09001 * 109.47648 * 204.99439 * 8 7 3 36 36 H 1.08994 * 109.47579 * 59.99857 * 9 8 7 37 37 H 1.09007 * 109.46584 * 299.99895 * 9 8 7 38 38 H 0.97010 * 119.99367 * 359.97438 * 10 9 8 39 39 H 1.07998 * 125.98947 * 359.93069 * 14 13 11 40 40 H 1.09004 * 109.47166 * 149.69052 * 17 16 15 41 41 H 1.08994 * 109.47507 * 29.68759 * 17 16 15 42 42 H 0.96996 * 119.99730 * 180.02562 * 21 20 18 43 43 H 1.09000 * 109.47021 * 90.00555 * 27 26 16 44 44 H 1.09009 * 109.47074 * 210.00037 * 27 26 16 45 45 H 1.08999 * 109.47418 * 329.99656 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2895 2.1503 -1.0513 5 7 2.6999 3.3118 -0.6824 6 6 2.7175 3.3781 0.6210 7 7 2.2999 2.1780 1.0912 8 6 2.1605 1.7816 2.4946 9 6 3.4269 1.0517 2.9467 10 7 3.2873 0.6547 4.3500 11 6 4.2869 -0.0070 4.9658 12 8 5.3046 -0.2751 4.3566 13 6 4.1465 -0.4060 6.3781 14 6 3.0300 -0.1667 7.2103 15 7 3.2848 -0.6760 8.3839 16 7 4.5615 -1.2488 8.3620 17 6 5.2178 -1.9204 9.4863 18 6 6.0116 -0.9139 10.2787 19 1 6.0255 0.1225 9.9753 20 6 6.7152 -1.3151 11.3946 21 7 7.4035 -0.4357 12.0892 22 14 6.6907 -3.1076 11.9196 23 1 7.8074 -3.8316 11.2610 24 1 6.8462 -3.1936 13.3940 25 1 5.3989 -3.7224 11.5214 26 6 5.0809 -1.0840 7.1349 27 6 6.4354 -1.5528 6.6695 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.0125 4.2308 1.2146 34 1 1.3016 1.1190 2.6014 35 1 2.0135 2.6691 3.1101 36 1 4.2859 1.7142 2.8400 37 1 3.5740 0.1641 2.3313 38 1 2.4752 0.8683 4.8359 39 1 2.1230 0.3448 6.9239 40 1 5.8863 -2.6936 9.1076 41 1 4.4635 -2.3750 10.1285 42 1 7.8988 -0.7180 12.8740 43 1 6.3512 -2.5607 6.2632 44 1 6.8072 -0.8795 5.8970 45 1 7.1275 -1.5570 7.5116 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417648303.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:21 Heat of formation + Delta-G solvation = 107.485124 kcal Electronic energy + Delta-G solvation = -27345.991154 eV Core-core repulsion = 23401.521216 eV Total energy + Delta-G solvation = -3944.469938 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.49096 -41.00950 -39.14557 -36.58613 -34.67627 -34.16845 -33.87142 -32.27074 -31.44913 -29.98908 -29.77968 -27.84889 -26.85191 -24.93147 -24.06346 -23.03392 -22.61627 -22.09881 -20.97755 -20.06150 -19.19492 -17.66815 -17.29497 -17.23644 -16.57257 -16.12288 -15.67046 -15.52388 -15.24610 -15.05221 -14.73266 -14.41180 -14.32188 -14.09155 -13.70544 -13.47378 -13.15362 -12.91334 -12.77006 -12.65264 -12.36079 -12.33077 -12.20937 -12.12266 -11.79385 -11.69581 -11.68184 -11.30180 -10.91615 -10.65803 -10.63695 -10.49249 -10.35122 -9.87506 -9.66189 -9.52729 -9.31988 -8.91859 -8.77313 -8.11911 -6.39644 -4.45111 1.41226 1.90698 1.96334 2.57908 2.58637 2.92447 3.05846 3.12471 3.15603 3.32650 3.68580 3.85833 3.94802 4.06112 4.09444 4.23737 4.45793 4.52366 4.71786 4.80647 4.91124 4.94126 4.99922 5.04924 5.05141 5.25029 5.34933 5.40467 5.44728 5.56292 5.60943 5.66227 5.73780 5.82789 5.92198 6.12958 6.20147 6.35173 6.42420 6.45703 6.49464 6.88096 7.10541 7.40474 7.45278 8.11717 8.14841 8.34389 8.41331 8.62978 9.13856 10.72404 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.027983 B = 0.002011 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.374574 B =13923.068332 C =14145.699312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.041 4.041 3 C 0.182 3.818 4 N -0.295 5.295 5 N -0.297 5.297 6 C 0.153 3.847 7 N -0.470 5.470 8 C 0.094 3.906 9 C 0.111 3.889 10 N -0.735 5.735 11 C 0.608 3.392 12 O -0.549 6.549 13 C -0.332 4.332 14 C 0.061 3.939 15 N -0.291 5.291 16 N -0.312 5.312 17 C 0.224 3.776 18 C -0.548 4.548 19 H 0.082 0.918 20 C 0.082 3.918 21 N -0.881 5.881 22 Si 0.873 3.127 23 H -0.269 1.269 24 H -0.278 1.278 25 H -0.263 1.263 26 C 0.172 3.828 27 C -0.101 4.101 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.219 0.781 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.400 0.600 39 H 0.178 0.822 40 H 0.049 0.951 41 H 0.056 0.944 42 H 0.271 0.729 43 H 0.078 0.922 44 H 0.098 0.902 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.209 0.789 -18.345 22.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.081 4.081 3 C -0.085 4.085 4 N -0.134 5.134 5 N -0.136 5.136 6 C -0.134 4.134 7 N -0.161 5.161 8 C -0.030 4.030 9 C -0.014 4.014 10 N -0.389 5.389 11 C 0.399 3.601 12 O -0.427 6.427 13 C -0.347 4.347 14 C -0.126 4.126 15 N -0.110 5.110 16 N -0.088 5.088 17 C 0.105 3.895 18 C -0.586 4.586 19 H 0.100 0.900 20 C -0.124 4.124 21 N -0.517 5.517 22 Si 0.698 3.302 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.188 1.188 26 C 0.035 3.965 27 C -0.159 4.159 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.120 0.880 32 H 0.103 0.897 33 H 0.236 0.764 34 H 0.123 0.877 35 H 0.127 0.873 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.235 0.765 39 H 0.194 0.806 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.096 0.904 44 H 0.116 0.884 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.572 0.781 -18.704 22.550 hybrid contribution -0.168 -0.675 1.480 1.636 sum -12.740 0.106 -17.223 21.423 Atomic orbital electron populations 1.21749 0.93387 1.02838 1.02580 1.20070 0.96755 0.86302 1.04960 1.24961 1.02931 0.97851 0.82767 1.74278 1.16357 0.98991 1.23822 1.74274 1.17282 1.13027 1.08974 1.26519 1.02949 0.90431 0.93540 1.46140 1.49628 1.12325 1.08054 1.22086 0.99837 1.02568 0.78519 1.21453 0.96589 0.99928 0.83471 1.45487 1.20733 1.61231 1.11447 1.17257 0.81900 0.75810 0.85183 1.90729 1.29005 1.56204 1.66769 1.19580 0.98983 1.20560 0.95597 1.23731 0.98308 0.99701 0.90909 1.77159 0.97383 1.15622 1.20862 1.48935 1.10841 1.39828 1.09219 1.20178 0.93138 0.93334 0.82810 1.21079 1.29943 0.96280 1.11283 0.90020 1.24799 0.94292 0.97862 0.95405 1.69858 1.30055 1.34215 1.17600 0.86903 0.79343 0.84868 0.79049 1.19457 1.20319 1.18793 1.21486 0.95628 0.94085 0.85281 1.20665 0.90318 1.02089 1.02876 0.91031 0.92769 0.91711 0.88046 0.89702 0.76415 0.87749 0.87292 0.90623 0.90786 0.76523 0.80554 0.93349 0.92640 0.91900 0.90377 0.88379 0.89682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.89 37.16 0.37 -0.34 16 2 C -0.04 -0.24 6.19 -27.88 -0.17 -0.42 16 3 C 0.18 1.64 7.28 -154.99 -1.13 0.51 16 4 N -0.29 -3.68 12.21 32.79 0.40 -3.28 16 5 N -0.30 -3.65 12.21 29.69 0.36 -3.29 16 6 C 0.15 1.27 12.74 -89.94 -1.15 0.12 16 7 N -0.47 -3.38 2.75 -115.30 -0.32 -3.69 16 8 C 0.09 0.40 5.93 -4.04 -0.02 0.37 16 9 C 0.11 0.82 6.00 -4.04 -0.02 0.79 16 10 N -0.73 -6.46 5.55 -61.38 -0.34 -6.80 16 11 C 0.61 8.57 7.81 -12.52 -0.10 8.47 16 12 O -0.55 -9.40 14.84 5.27 0.08 -9.32 16 13 C -0.33 -5.32 6.13 -105.06 -0.64 -5.97 16 14 C 0.06 0.92 11.50 -16.98 -0.20 0.72 16 15 N -0.29 -5.68 12.50 30.86 0.39 -5.29 16 16 N -0.31 -6.46 3.56 -57.78 -0.21 -6.67 16 17 C 0.22 4.98 4.85 -5.20 -0.03 4.95 16 18 C -0.55 -14.48 9.94 -34.44 -0.34 -14.83 16 19 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 20 C 0.08 2.17 5.47 -17.82 -0.10 2.08 16 21 N -0.88 -25.18 13.96 55.43 0.77 -24.40 16 22 Si 0.87 19.16 27.47 -169.99 -4.67 14.49 16 23 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 24 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 25 H -0.26 -5.49 6.54 56.52 0.37 -5.12 16 26 C 0.17 3.19 7.01 -81.60 -0.57 2.62 16 27 C -0.10 -1.68 9.34 36.00 0.34 -1.34 16 28 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.40 7.62 -51.93 -0.40 0.00 16 33 H 0.22 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.10 0.27 8.02 -51.93 -0.42 -0.15 16 35 H 0.11 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.63 7.82 -51.92 -0.41 0.23 16 38 H 0.40 2.31 7.43 -40.82 -0.30 2.01 16 39 H 0.18 1.69 7.50 -52.49 -0.39 1.30 16 40 H 0.05 0.99 7.06 -51.93 -0.37 0.62 16 41 H 0.06 1.24 7.19 -51.93 -0.37 0.87 16 42 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 44 H 0.10 1.62 6.50 -51.92 -0.34 1.29 16 45 H 0.08 1.47 7.70 -51.93 -0.40 1.07 16 LS Contribution 384.15 15.07 5.79 5.79 Total: -1.00 -35.84 384.15 -7.87 -43.72 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -6.36 Total: 0.99 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -3.77 Total: -2.25 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: 1.06 Total: -53.42 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.08 Total: -9.32 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -4.67 Total: 14.49 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.84 -7.87 -43.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417648303.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.201 kcal (2) G-P(sol) polarization free energy of solvation -35.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds