Wall clock time and date at job start Tue Mar 31 2020 18:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47172 * 2 1 4 4 N 1.30524 * 126.34287 * 270.03946 * 3 2 1 5 5 N 1.28595 * 109.67201 * 179.97438 * 4 3 2 6 6 C 1.30526 * 109.67330 * 359.72135 * 5 4 3 7 7 N 1.35489 * 126.34983 * 89.99336 * 3 2 1 8 8 C 1.46494 * 126.98091 * 0.04023 * 7 3 2 9 9 C 1.53004 * 109.47266 * 84.99914 * 8 7 3 10 10 N 1.46500 * 109.47413 * 180.02562 * 9 8 7 11 11 C 1.34770 * 120.00063 * 179.97438 * 10 9 8 12 12 O 1.21603 * 120.00516 * 359.97438 * 11 10 9 13 13 C 1.47431 * 119.99929 * 179.97438 * 11 10 9 14 14 C 1.41293 * 126.41437 * 0.04241 * 13 11 10 15 15 N 1.30448 * 108.02361 * 179.70632 * 14 13 11 16 16 N 1.39944 * 108.89724 * 0.40720 * 15 14 13 17 17 C 1.46491 * 125.75406 * 179.85047 * 16 15 14 18 18 C 1.50702 * 109.46957 * 269.68786 * 17 16 15 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99942 * 179.72213 * 18 17 16 21 21 N 1.31514 * 119.99985 * 180.27663 * 20 18 17 22 22 Si 1.86800 * 119.99777 * 0.28166 * 20 18 17 23 23 H 1.48498 * 109.47109 * 89.99834 * 22 20 18 24 24 H 1.48507 * 109.46754 * 209.99574 * 22 20 18 25 25 H 1.48498 * 109.47278 * 329.99405 * 22 20 18 26 26 C 1.34263 * 108.48668 * 359.58371 * 16 15 14 27 27 C 1.50694 * 126.28562 * 180.22136 * 26 16 15 28 28 H 1.09000 * 109.47363 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47372 * 300.00728 * 1 2 3 30 30 H 1.09003 * 109.46833 * 60.00624 * 1 2 3 31 31 H 1.08998 * 109.47372 * 239.99272 * 2 1 3 32 32 H 1.09003 * 109.46833 * 119.99376 * 2 1 3 33 33 H 1.07996 * 126.34424 * 180.30036 * 6 5 4 34 34 H 1.09000 * 109.47126 * 324.99771 * 8 7 3 35 35 H 1.09001 * 109.47648 * 204.99439 * 8 7 3 36 36 H 1.08994 * 109.47579 * 59.99857 * 9 8 7 37 37 H 1.09007 * 109.46584 * 299.99895 * 9 8 7 38 38 H 0.97010 * 119.99367 * 359.97438 * 10 9 8 39 39 H 1.07998 * 125.98947 * 359.93069 * 14 13 11 40 40 H 1.09004 * 109.47166 * 149.69052 * 17 16 15 41 41 H 1.08994 * 109.47507 * 29.68759 * 17 16 15 42 42 H 0.96996 * 119.99730 * 180.02562 * 21 20 18 43 43 H 1.09000 * 109.47021 * 90.00555 * 27 26 16 44 44 H 1.09009 * 109.47074 * 210.00037 * 27 26 16 45 45 H 1.08999 * 109.47418 * 329.99656 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2895 2.1503 -1.0513 5 7 2.6999 3.3118 -0.6824 6 6 2.7175 3.3781 0.6210 7 7 2.2999 2.1780 1.0912 8 6 2.1605 1.7816 2.4946 9 6 3.4269 1.0517 2.9467 10 7 3.2873 0.6547 4.3500 11 6 4.2869 -0.0070 4.9658 12 8 5.3046 -0.2751 4.3566 13 6 4.1465 -0.4060 6.3781 14 6 3.0300 -0.1667 7.2103 15 7 3.2848 -0.6760 8.3839 16 7 4.5615 -1.2488 8.3620 17 6 5.2178 -1.9204 9.4863 18 6 6.0116 -0.9139 10.2787 19 1 6.0255 0.1225 9.9753 20 6 6.7152 -1.3151 11.3946 21 7 7.4035 -0.4357 12.0892 22 14 6.6907 -3.1076 11.9196 23 1 7.8074 -3.8316 11.2610 24 1 6.8462 -3.1936 13.3940 25 1 5.3989 -3.7224 11.5214 26 6 5.0809 -1.0840 7.1349 27 6 6.4354 -1.5528 6.6695 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.0125 4.2308 1.2146 34 1 1.3016 1.1190 2.6014 35 1 2.0135 2.6691 3.1101 36 1 4.2859 1.7142 2.8400 37 1 3.5740 0.1641 2.3313 38 1 2.4752 0.8683 4.8359 39 1 2.1230 0.3448 6.9239 40 1 5.8863 -2.6936 9.1076 41 1 4.4635 -2.3750 10.1285 42 1 7.8988 -0.7180 12.8740 43 1 6.3512 -2.5607 6.2632 44 1 6.8072 -0.8795 5.8970 45 1 7.1275 -1.5570 7.5116 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417648303.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:20 Heat of formation + Delta-G solvation = 82.970187 kcal Electronic energy + Delta-G solvation = -27347.054201 eV Core-core repulsion = 23401.521216 eV Total energy + Delta-G solvation = -3945.532985 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.13572 -42.33350 -40.21152 -37.29761 -35.79054 -35.32338 -34.71450 -33.93367 -32.85540 -30.80169 -30.49484 -29.34484 -28.12429 -25.62702 -24.98019 -24.40320 -23.32630 -23.11492 -21.63489 -21.18615 -20.52803 -19.28382 -18.66441 -17.93090 -17.39585 -16.81008 -16.72972 -16.51230 -16.34570 -16.14905 -15.84731 -15.50937 -15.30080 -14.85289 -14.76210 -14.61958 -14.40926 -14.13633 -13.78643 -13.70771 -13.63498 -13.43210 -13.14895 -12.99635 -12.83887 -12.66090 -12.57991 -12.36510 -12.15358 -12.11721 -11.85568 -11.74225 -11.28982 -11.26268 -10.92475 -10.86547 -10.26132 -10.23446 -10.19869 -9.44706 -8.43532 -6.55547 0.64869 0.81227 1.31126 1.34152 1.35118 1.36899 1.45257 1.66539 1.87865 2.24194 2.40348 2.52807 2.88994 3.34253 3.56027 3.60500 3.71236 3.74881 3.80150 4.01734 4.10630 4.17589 4.23331 4.31046 4.36164 4.48723 4.49258 4.54276 4.58133 4.65205 4.73045 4.82368 4.89519 5.01517 5.05472 5.13463 5.14670 5.17890 5.18871 5.34516 5.38971 5.65569 5.82955 5.93314 6.20180 6.47759 6.57054 6.81849 7.08536 7.32314 7.73391 8.72707 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.027983 B = 0.002011 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.374574 B =13923.068332 C =14145.699312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.041 4.041 3 C 0.185 3.815 4 N -0.345 5.345 5 N -0.350 5.350 6 C 0.163 3.837 7 N -0.467 5.467 8 C 0.100 3.900 9 C 0.114 3.886 10 N -0.708 5.708 11 C 0.608 3.392 12 O -0.583 6.583 13 C -0.329 4.329 14 C 0.085 3.915 15 N -0.335 5.335 16 N -0.339 5.339 17 C 0.234 3.766 18 C -0.553 4.553 19 H 0.027 0.973 20 C 0.022 3.978 21 N -0.934 5.934 22 Si 0.948 3.052 23 H -0.254 1.254 24 H -0.279 1.279 25 H -0.241 1.241 26 C 0.147 3.853 27 C -0.095 4.095 28 H 0.087 0.913 29 H 0.063 0.937 30 H 0.047 0.953 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.255 0.745 34 H 0.132 0.868 35 H 0.140 0.860 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.420 0.580 39 H 0.234 0.766 40 H 0.069 0.931 41 H 0.057 0.943 42 H 0.274 0.726 43 H 0.099 0.901 44 H 0.095 0.905 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.489 -0.458 -18.589 24.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.080 4.080 3 C -0.084 4.084 4 N -0.184 5.184 5 N -0.187 5.187 6 C -0.126 4.126 7 N -0.158 5.158 8 C -0.023 4.023 9 C -0.011 4.011 10 N -0.362 5.362 11 C 0.398 3.602 12 O -0.464 6.464 13 C -0.345 4.345 14 C -0.102 4.102 15 N -0.154 5.154 16 N -0.116 5.116 17 C 0.114 3.886 18 C -0.591 4.591 19 H 0.045 0.955 20 C -0.178 4.178 21 N -0.572 5.572 22 Si 0.769 3.231 23 H -0.178 1.178 24 H -0.204 1.204 25 H -0.164 1.164 26 C 0.011 3.989 27 C -0.153 4.153 28 H 0.106 0.894 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.115 0.885 32 H 0.121 0.879 33 H 0.271 0.729 34 H 0.150 0.850 35 H 0.158 0.842 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.258 0.742 39 H 0.250 0.750 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.118 0.882 44 H 0.113 0.887 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.909 -0.440 -18.987 24.145 hybrid contribution 0.503 -0.125 1.450 1.540 sum -14.406 -0.565 -17.537 22.702 Atomic orbital electron populations 1.21717 0.92307 1.03762 1.02220 1.20222 0.97554 0.84646 1.05624 1.25452 1.01675 0.98603 0.82708 1.74172 1.18434 0.99840 1.25993 1.74163 1.19467 1.13727 1.11365 1.27194 1.00990 0.91516 0.92856 1.46259 1.49030 1.11693 1.08787 1.22267 0.98720 1.04215 0.77065 1.21456 0.97951 0.99574 0.82124 1.45159 1.19986 1.59056 1.11988 1.17061 0.82454 0.76285 0.84420 1.90723 1.30698 1.57795 1.67204 1.19896 0.98609 1.19304 0.96647 1.24603 0.99358 0.97334 0.88945 1.77104 0.97412 1.17566 1.23353 1.48747 1.11799 1.41681 1.09349 1.19872 0.92927 0.92513 0.83318 1.21191 1.30817 0.94867 1.12186 0.95498 1.25825 0.93453 1.03379 0.95147 1.70022 1.31564 1.37126 1.18536 0.85711 0.80787 0.78179 0.78383 1.17783 1.20385 1.16444 1.21987 0.96764 0.94893 0.85218 1.20629 0.89364 1.03247 1.02044 0.89439 0.91790 0.93398 0.88491 0.87929 0.72926 0.85040 0.84179 0.92171 0.91782 0.74242 0.74962 0.91312 0.92520 0.91683 0.88249 0.88681 0.91264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.89 71.98 0.71 -0.31 16 2 C -0.04 -0.40 6.19 29.85 0.18 -0.22 16 3 C 0.18 3.06 7.28 137.98 1.01 4.07 16 4 N -0.35 -8.66 12.21 -50.16 -0.61 -9.28 16 5 N -0.35 -8.55 12.21 -59.99 -0.73 -9.28 16 6 C 0.16 2.39 12.74 180.11 2.29 4.69 16 7 N -0.47 -5.44 2.75 -518.71 -1.42 -6.87 16 8 C 0.10 0.39 5.93 86.38 0.51 0.90 16 9 C 0.11 1.30 6.00 86.38 0.52 1.82 16 10 N -0.71 -9.63 5.55 -466.37 -2.59 -12.21 16 11 C 0.61 15.65 7.81 86.67 0.68 16.33 16 12 O -0.58 -19.23 14.84 -4.04 -0.06 -19.29 16 13 C -0.33 -9.90 6.13 -20.15 -0.12 -10.02 16 14 C 0.08 2.29 11.50 85.65 0.99 3.27 16 15 N -0.34 -12.67 12.50 -56.27 -0.70 -13.38 16 16 N -0.34 -13.98 3.56 -336.72 -1.20 -15.18 16 17 C 0.23 10.36 4.85 85.64 0.42 10.78 16 18 C -0.55 -30.22 9.94 25.60 0.25 -29.97 16 19 H 0.03 1.71 8.06 -2.91 -0.02 1.69 16 20 C 0.02 1.21 5.47 84.66 0.46 1.67 16 21 N -0.93 -55.29 13.96 21.45 0.30 -54.99 16 22 Si 0.95 39.22 27.47 68.60 1.88 41.11 16 23 H -0.25 -9.81 7.11 99.48 0.71 -9.11 16 24 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 25 H -0.24 -9.05 6.54 99.48 0.65 -8.40 16 26 C 0.15 5.38 7.01 42.14 0.30 5.67 16 27 C -0.09 -3.13 9.34 71.23 0.67 -2.47 16 28 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.10 0.64 7.62 -2.39 -0.02 0.62 16 33 H 0.25 1.39 8.06 -2.91 -0.02 1.37 16 34 H 0.13 -0.09 8.02 -2.39 -0.02 -0.11 16 35 H 0.14 -0.20 8.14 -2.39 -0.02 -0.22 16 36 H 0.06 0.93 8.14 -2.39 -0.02 0.92 16 37 H 0.06 0.92 7.82 -2.38 -0.02 0.90 16 38 H 0.42 2.53 7.43 -92.70 -0.69 1.84 16 39 H 0.23 3.16 7.50 -2.91 -0.02 3.14 16 40 H 0.07 2.74 7.06 -2.38 -0.02 2.72 16 41 H 0.06 2.48 7.19 -2.39 -0.02 2.46 16 42 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 43 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 44 H 0.09 3.18 6.50 -2.38 -0.02 3.16 16 45 H 0.07 2.46 7.70 -2.39 -0.02 2.44 16 Total: -1.00 -85.39 384.15 4.00 -81.39 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: 0.28 Total: 11.79 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: 8.86 Total: 6.20 kcal Atomic # 7 Polarization: -114.23 SS G_CDS: -6.96 Total: -121.19 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.06 Total: -19.29 kcal Atomic # 14 Polarization: 39.22 SS G_CDS: 1.88 Total: 41.11 kcal Total: -85.39 4.00 -81.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417648303.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.357 kcal (2) G-P(sol) polarization free energy of solvation -85.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds