Wall clock time and date at job start Tue Mar 31 2020 18:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47262 * 2 1 4 4 C 1.53002 * 109.47215 * 120.00126 * 2 1 3 5 5 C 1.50700 * 109.46968 * 184.99757 * 4 2 1 6 6 C 1.39868 * 126.04203 * 269.68636 * 5 4 2 7 7 N 1.30834 * 108.20470 * 179.81803 * 6 5 4 8 8 N 1.40086 * 108.20223 * 0.44739 * 7 6 5 9 9 C 1.46506 * 126.03463 * 179.69584 * 8 7 6 10 10 C 1.34941 * 107.92822 * 359.71141 * 8 7 6 11 11 N 1.46503 * 109.47036 * 240.00136 * 2 1 3 12 12 C 1.34775 * 120.00069 * 84.99916 * 11 2 1 13 13 O 1.21594 * 119.99767 * 359.97438 * 12 11 2 14 14 N 1.34777 * 120.00065 * 179.97438 * 12 11 2 15 15 C 1.40192 * 120.00049 * 180.02562 * 14 12 11 16 16 C 1.40402 * 125.97032 * 359.97438 * 15 14 12 17 17 C 1.35245 * 107.86627 * 179.70432 * 16 15 14 18 18 N 1.34964 * 107.85965 * 0.26430 * 17 16 15 19 19 C 1.46495 * 125.98003 * 179.97438 * 18 17 16 20 20 C 1.50703 * 109.47002 * 125.00169 * 19 18 17 21 21 H 1.07998 * 120.00063 * 0.02562 * 20 19 18 22 22 C 1.37881 * 119.99758 * 180.02562 * 20 19 18 23 23 N 1.31508 * 120.00294 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99549 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47194 * 60.00413 * 24 22 20 26 26 H 1.48504 * 109.46856 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47052 * 300.00223 * 24 22 20 28 28 N 1.31206 * 125.97560 * 180.17721 * 15 14 12 29 29 H 1.08993 * 109.46948 * 59.99784 * 1 2 3 30 30 H 1.08995 * 109.46841 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46524 * 299.99708 * 1 2 3 32 32 H 1.08996 * 109.47143 * 304.99820 * 4 2 1 33 33 H 1.08994 * 109.47269 * 64.99942 * 4 2 1 34 34 H 1.08002 * 125.89818 * 0.02562 * 6 5 4 35 35 H 1.08996 * 109.47110 * 270.02123 * 9 8 7 36 36 H 1.09004 * 109.47313 * 30.02118 * 9 8 7 37 37 H 1.09001 * 109.46625 * 150.02006 * 9 8 7 38 38 H 1.08000 * 126.12964 * 180.02562 * 10 8 7 39 39 H 0.97005 * 119.99875 * 265.00221 * 11 2 1 40 40 H 0.97005 * 119.99878 * 0.02562 * 14 12 11 41 41 H 1.08002 * 126.07048 * 359.97438 * 16 15 14 42 42 H 1.08000 * 126.07435 * 180.26799 * 17 16 15 43 43 H 1.08994 * 109.47532 * 245.00383 * 19 18 17 44 44 H 1.08999 * 109.47116 * 5.01096 * 19 18 17 45 45 H 0.97002 * 120.00081 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3126 6 6 4.4550 -1.5194 0.7607 7 7 5.6633 -1.0884 1.0176 8 7 5.5572 0.1004 1.7510 9 6 6.6732 0.9087 2.2485 10 6 4.2455 0.3693 1.9187 11 7 2.0183 -0.6906 -1.1962 12 6 2.1470 -0.0182 -2.3572 13 8 1.8574 1.1614 -2.4118 14 7 2.5968 -0.6534 -3.4575 15 6 2.7311 0.0461 -4.6650 16 6 2.4348 1.4032 -4.8693 17 6 2.7031 1.6965 -6.1620 18 7 3.1467 0.5700 -6.7585 19 6 3.5506 0.4405 -8.1607 20 6 4.9497 -0.1150 -8.2311 21 1 5.4844 -0.3486 -7.3223 22 6 5.5472 -0.3250 -9.4559 23 7 4.8964 -0.0401 -10.5626 24 14 7.2813 -1.0143 -9.5431 25 1 7.3167 -2.3490 -8.8931 26 1 7.6913 -1.1443 -10.9645 27 1 8.2145 -0.0969 -8.8412 28 7 3.1523 -0.4539 -5.8026 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.6055 -0.2618 2.1369 33 1 1.7517 -1.7715 1.2056 34 1 4.2057 -2.4167 0.2138 35 1 6.9512 0.5694 3.2463 36 1 7.5261 0.8025 1.5780 37 1 6.3728 1.9556 2.2913 38 1 3.8314 1.2182 2.4425 39 1 2.2490 -1.6318 -1.1527 40 1 2.8275 -1.5946 -3.4139 41 1 2.0630 2.0919 -4.1250 42 1 2.5836 2.6608 -6.6333 43 1 2.8658 -0.2335 -8.6754 44 1 3.5242 1.4198 -8.6384 45 1 5.3169 -0.1875 -11.4242 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434700949.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:19 Heat of formation + Delta-G solvation = 132.229289 kcal Electronic energy + Delta-G solvation = -27557.808330 eV Core-core repulsion = 23614.411380 eV Total energy + Delta-G solvation = -3943.396950 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.46605 -40.61844 -39.53522 -36.56302 -34.53393 -33.57351 -33.30635 -32.06008 -30.83575 -29.99467 -29.18223 -27.97792 -26.55609 -25.56766 -23.36502 -22.29904 -21.48352 -21.02405 -20.39547 -20.25371 -19.66112 -17.93282 -17.05698 -16.69261 -16.52137 -15.94972 -15.65381 -15.26319 -14.91324 -14.78685 -14.41005 -14.26227 -13.99045 -13.80719 -13.52433 -13.37183 -13.01905 -12.80927 -12.76627 -12.44138 -12.26543 -12.19925 -12.15443 -11.82567 -11.67571 -11.20325 -11.01706 -10.82377 -10.73864 -10.36548 -10.21166 -9.97133 -9.66098 -9.59077 -9.44895 -9.12584 -8.59177 -8.57575 -8.02241 -7.33368 -6.20313 -4.25190 1.66296 2.28907 2.49847 2.58483 2.75953 3.21677 3.28530 3.31313 3.36470 3.70579 3.94139 4.23424 4.32484 4.44260 4.54823 4.70695 4.79438 4.82530 4.83563 5.05129 5.08723 5.14654 5.24365 5.36661 5.50112 5.55306 5.59813 5.61929 5.75962 5.88093 5.96553 6.11525 6.33690 6.40960 6.48343 6.61681 6.69932 6.75868 6.94378 7.08084 7.19450 7.47199 7.58903 7.74157 7.89233 8.08139 8.13616 8.73114 8.73802 8.85969 9.40191 10.88295 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.012363 B = 0.002600 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.270608 B =10766.936195 C =12321.611275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.167 3.833 3 H 0.088 0.912 4 C -0.046 4.046 5 C -0.235 4.235 6 C 0.055 3.945 7 N -0.295 5.295 8 N -0.377 5.377 9 C 0.101 3.899 10 C 0.057 3.943 11 N -0.734 5.734 12 C 0.715 3.285 13 O -0.570 6.570 14 N -0.645 5.645 15 C 0.278 3.722 16 C -0.286 4.286 17 C 0.049 3.951 18 N -0.322 5.322 19 C 0.259 3.741 20 C -0.528 4.528 21 H 0.068 0.932 22 C 0.062 3.938 23 N -0.896 5.896 24 Si 0.907 3.093 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.275 1.275 28 N -0.309 5.309 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.179 0.821 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.172 0.828 39 H 0.393 0.607 40 H 0.405 0.595 41 H 0.160 0.840 42 H 0.166 0.834 43 H 0.044 0.956 44 H 0.056 0.944 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.437 0.386 28.080 28.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.062 3.938 3 H 0.106 0.894 4 C -0.086 4.086 5 C -0.247 4.247 6 C -0.132 4.132 7 N -0.116 5.116 8 N -0.158 5.158 9 C -0.040 4.040 10 C -0.089 4.089 11 N -0.390 5.390 12 C 0.414 3.586 13 O -0.446 6.446 14 N -0.295 5.295 15 C 0.024 3.976 16 C -0.318 4.318 17 C -0.101 4.101 18 N -0.104 5.104 19 C 0.142 3.858 20 C -0.566 4.566 21 H 0.086 0.914 22 C -0.141 4.141 23 N -0.535 5.535 24 Si 0.735 3.265 25 H -0.199 1.199 26 H -0.211 1.211 27 H -0.201 1.201 28 N -0.140 5.140 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.196 0.804 35 H 0.092 0.908 36 H 0.108 0.892 37 H 0.105 0.895 38 H 0.189 0.811 39 H 0.227 0.773 40 H 0.240 0.760 41 H 0.178 0.822 42 H 0.184 0.816 43 H 0.062 0.938 44 H 0.074 0.926 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.840 0.320 27.033 27.306 hybrid contribution 0.130 -0.379 0.273 0.485 sum -3.710 -0.059 27.306 27.557 Atomic orbital electron populations 1.22232 0.95409 1.02115 1.02698 1.20828 0.93193 0.97349 0.82425 0.89408 1.20207 0.89612 1.01460 0.97277 1.19957 0.96379 0.98686 1.09644 1.23727 0.89706 1.00002 0.99724 1.77397 1.22631 0.97591 1.13961 1.48444 1.05427 1.19506 1.42471 1.21858 0.88272 0.93842 1.00036 1.22315 0.84119 1.00591 1.01860 1.45058 1.71928 1.13462 1.08554 1.15630 0.78245 0.84939 0.79775 1.90846 1.55984 1.13969 1.83803 1.41411 1.68414 1.13273 1.06371 1.18790 1.01443 0.91528 0.85874 1.21506 1.17791 0.95562 0.96892 1.22544 1.00452 0.93208 0.93856 1.49034 1.46478 1.04486 1.10380 1.19705 0.96773 0.99240 0.70091 1.21236 0.98413 1.43695 0.93280 0.91377 1.24939 0.98738 0.95231 0.95152 1.69908 1.37904 1.47898 0.97747 0.86396 0.83462 0.79751 0.76938 1.19925 1.21059 1.20072 1.77321 1.26967 1.13512 0.96215 0.91688 0.92514 0.91764 0.89738 0.90535 0.80443 0.90822 0.89231 0.89462 0.81104 0.77287 0.76023 0.82240 0.81637 0.93801 0.92610 0.92310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 9.48 37.16 0.35 -0.94 16 2 C 0.17 1.42 2.56 -67.93 -0.17 1.24 16 3 H 0.09 0.95 7.58 -51.93 -0.39 0.55 16 4 C -0.05 -0.28 5.24 -27.88 -0.15 -0.42 16 5 C -0.24 -1.96 5.09 -105.05 -0.53 -2.50 16 6 C 0.05 0.54 11.92 -17.37 -0.21 0.33 16 7 N -0.29 -3.58 12.58 30.62 0.39 -3.19 16 8 N -0.38 -3.65 4.01 -68.16 -0.27 -3.92 16 9 C 0.10 0.60 11.47 59.85 0.69 1.28 16 10 C 0.06 0.47 11.40 -17.22 -0.20 0.27 16 11 N -0.73 -7.37 4.76 -58.67 -0.28 -7.65 16 12 C 0.71 10.75 8.50 -86.92 -0.74 10.01 16 13 O -0.57 -10.45 13.13 5.28 0.07 -10.39 16 14 N -0.64 -10.45 5.45 -15.51 -0.08 -10.53 16 15 C 0.28 5.81 8.11 -154.37 -1.25 4.56 16 16 C -0.29 -5.93 9.61 -39.83 -0.38 -6.31 16 17 C 0.05 1.03 11.44 -17.24 -0.20 0.83 16 18 N -0.32 -7.72 3.67 -62.57 -0.23 -7.95 16 19 C 0.26 6.75 6.26 -5.19 -0.03 6.72 16 20 C -0.53 -15.00 9.24 -34.44 -0.32 -15.32 16 21 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 22 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 23 N -0.90 -25.73 13.29 55.43 0.74 -24.99 16 24 Si 0.91 21.75 29.54 -169.99 -5.02 16.72 16 25 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 26 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 N -0.31 -7.34 12.42 31.44 0.39 -6.95 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.18 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.17 0.84 8.06 -52.49 -0.42 0.42 16 39 H 0.39 2.92 8.62 -40.82 -0.35 2.57 16 40 H 0.41 5.38 8.84 -40.82 -0.36 5.02 16 41 H 0.16 3.25 5.91 -52.49 -0.31 2.94 16 42 H 0.17 2.82 8.06 -52.49 -0.42 2.40 16 43 H 0.04 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 45 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 388.53 15.07 5.86 5.86 Total: -1.00 -36.93 388.53 -8.14 -45.07 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -6.45 Total: 6.54 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: -3.24 Total: 1.39 kcal Atomic # 7 Polarization: -65.85 SS G_CDS: 0.65 Total: -65.20 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.07 Total: -10.39 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.93 -8.14 -45.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434700949.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.297 kcal (2) G-P(sol) polarization free energy of solvation -36.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds