Wall clock time and date at job start Tue Mar 31 2020 18:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47262 * 2 1 4 4 C 1.53002 * 109.47215 * 120.00126 * 2 1 3 5 5 C 1.50700 * 109.46968 * 184.99757 * 4 2 1 6 6 C 1.39868 * 126.04203 * 269.68636 * 5 4 2 7 7 N 1.30834 * 108.20470 * 179.81803 * 6 5 4 8 8 N 1.40086 * 108.20223 * 0.44739 * 7 6 5 9 9 C 1.46506 * 126.03463 * 179.69584 * 8 7 6 10 10 C 1.34941 * 107.92822 * 359.71141 * 8 7 6 11 11 N 1.46503 * 109.47036 * 240.00136 * 2 1 3 12 12 C 1.34775 * 120.00069 * 84.99916 * 11 2 1 13 13 O 1.21594 * 119.99767 * 359.97438 * 12 11 2 14 14 N 1.34777 * 120.00065 * 179.97438 * 12 11 2 15 15 C 1.40192 * 120.00049 * 180.02562 * 14 12 11 16 16 C 1.40402 * 125.97032 * 359.97438 * 15 14 12 17 17 C 1.35245 * 107.86627 * 179.70432 * 16 15 14 18 18 N 1.34964 * 107.85965 * 0.26430 * 17 16 15 19 19 C 1.46495 * 125.98003 * 179.97438 * 18 17 16 20 20 C 1.50703 * 109.47002 * 125.00169 * 19 18 17 21 21 H 1.07998 * 120.00063 * 0.02562 * 20 19 18 22 22 C 1.37881 * 119.99758 * 180.02562 * 20 19 18 23 23 N 1.31508 * 120.00294 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99549 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47194 * 60.00413 * 24 22 20 26 26 H 1.48504 * 109.46856 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47052 * 300.00223 * 24 22 20 28 28 N 1.31206 * 125.97560 * 180.17721 * 15 14 12 29 29 H 1.08993 * 109.46948 * 59.99784 * 1 2 3 30 30 H 1.08995 * 109.46841 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46524 * 299.99708 * 1 2 3 32 32 H 1.08996 * 109.47143 * 304.99820 * 4 2 1 33 33 H 1.08994 * 109.47269 * 64.99942 * 4 2 1 34 34 H 1.08002 * 125.89818 * 0.02562 * 6 5 4 35 35 H 1.08996 * 109.47110 * 270.02123 * 9 8 7 36 36 H 1.09004 * 109.47313 * 30.02118 * 9 8 7 37 37 H 1.09001 * 109.46625 * 150.02006 * 9 8 7 38 38 H 1.08000 * 126.12964 * 180.02562 * 10 8 7 39 39 H 0.97005 * 119.99875 * 265.00221 * 11 2 1 40 40 H 0.97005 * 119.99878 * 0.02562 * 14 12 11 41 41 H 1.08002 * 126.07048 * 359.97438 * 16 15 14 42 42 H 1.08000 * 126.07435 * 180.26799 * 17 16 15 43 43 H 1.08994 * 109.47532 * 245.00383 * 19 18 17 44 44 H 1.08999 * 109.47116 * 5.01096 * 19 18 17 45 45 H 0.97002 * 120.00081 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3126 6 6 4.4550 -1.5194 0.7607 7 7 5.6633 -1.0884 1.0176 8 7 5.5572 0.1004 1.7510 9 6 6.6732 0.9087 2.2485 10 6 4.2455 0.3693 1.9187 11 7 2.0183 -0.6906 -1.1962 12 6 2.1470 -0.0182 -2.3572 13 8 1.8574 1.1614 -2.4118 14 7 2.5968 -0.6534 -3.4575 15 6 2.7311 0.0461 -4.6650 16 6 2.4348 1.4032 -4.8693 17 6 2.7031 1.6965 -6.1620 18 7 3.1467 0.5700 -6.7585 19 6 3.5506 0.4405 -8.1607 20 6 4.9497 -0.1150 -8.2311 21 1 5.4844 -0.3486 -7.3223 22 6 5.5472 -0.3250 -9.4559 23 7 4.8964 -0.0401 -10.5626 24 14 7.2813 -1.0143 -9.5431 25 1 7.3167 -2.3490 -8.8931 26 1 7.6913 -1.1443 -10.9645 27 1 8.2145 -0.0969 -8.8412 28 7 3.1523 -0.4539 -5.8026 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.6055 -0.2618 2.1369 33 1 1.7517 -1.7715 1.2056 34 1 4.2057 -2.4167 0.2138 35 1 6.9512 0.5694 3.2463 36 1 7.5261 0.8025 1.5780 37 1 6.3728 1.9556 2.2913 38 1 3.8314 1.2182 2.4425 39 1 2.2490 -1.6318 -1.1527 40 1 2.8275 -1.5946 -3.4139 41 1 2.0630 2.0919 -4.1250 42 1 2.5836 2.6608 -6.6333 43 1 2.8658 -0.2335 -8.6754 44 1 3.5242 1.4198 -8.6384 45 1 5.3169 -0.1875 -11.4242 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434700949.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:18 Heat of formation + Delta-G solvation = 106.939192 kcal Electronic energy + Delta-G solvation = -27558.904991 eV Core-core repulsion = 23614.411380 eV Total energy + Delta-G solvation = -3944.493611 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.23109 -42.04929 -40.83826 -37.46140 -36.05600 -35.25872 -34.19851 -33.19515 -32.25481 -31.00917 -30.73289 -28.51106 -28.48490 -26.16404 -25.12933 -23.61745 -22.25977 -22.11700 -21.60179 -21.26330 -20.89904 -19.14782 -18.68406 -18.17442 -17.63966 -17.24610 -16.66817 -16.38988 -16.27992 -16.01235 -15.54661 -15.50529 -15.27747 -14.76991 -14.51386 -14.28125 -14.11457 -13.95142 -13.78283 -13.68569 -13.52860 -13.35365 -13.09609 -12.91792 -12.73971 -12.72841 -12.40665 -12.27923 -12.07040 -11.84923 -11.58345 -11.39185 -11.37627 -11.02599 -10.72241 -10.35152 -10.09089 -9.69772 -9.21085 -9.01670 -8.32741 -6.47125 1.03441 1.10456 1.22089 1.37382 1.39457 1.48478 1.75245 1.76218 1.91340 2.17666 2.36471 2.48781 2.98438 3.25249 3.71309 3.98597 4.03857 4.12586 4.24531 4.29221 4.30981 4.41947 4.47856 4.65906 4.67653 4.74846 4.79961 4.89899 4.94269 4.96893 4.97861 5.02848 5.09110 5.17329 5.23051 5.32677 5.48656 5.56518 5.73562 5.78413 5.80027 5.95046 6.01649 6.21648 6.30792 6.64308 6.80968 6.83699 7.20589 7.22681 7.54952 8.74437 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.012363 B = 0.002600 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.270608 B =10766.936195 C =12321.611275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.167 3.833 3 H 0.065 0.935 4 C -0.033 4.033 5 C -0.245 4.245 6 C 0.043 3.957 7 N -0.348 5.348 8 N -0.387 5.387 9 C 0.093 3.907 10 C 0.054 3.946 11 N -0.712 5.712 12 C 0.711 3.289 13 O -0.604 6.604 14 N -0.640 5.640 15 C 0.286 3.714 16 C -0.293 4.293 17 C 0.055 3.945 18 N -0.346 5.346 19 C 0.274 3.726 20 C -0.549 4.549 21 H 0.051 0.949 22 C 0.019 3.981 23 N -0.920 5.920 24 Si 0.970 3.030 25 H -0.273 1.273 26 H -0.271 1.271 27 H -0.271 1.271 28 N -0.350 5.350 29 H 0.032 0.968 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.110 0.890 33 H 0.095 0.905 34 H 0.194 0.806 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.110 0.890 38 H 0.203 0.797 39 H 0.409 0.591 40 H 0.418 0.582 41 H 0.166 0.834 42 H 0.200 0.800 43 H 0.021 0.979 44 H 0.058 0.942 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.703 0.318 30.242 30.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.062 3.938 3 H 0.083 0.917 4 C -0.072 4.072 5 C -0.256 4.256 6 C -0.142 4.142 7 N -0.170 5.170 8 N -0.170 5.170 9 C -0.047 4.047 10 C -0.093 4.093 11 N -0.368 5.368 12 C 0.411 3.589 13 O -0.482 6.482 14 N -0.291 5.291 15 C 0.030 3.970 16 C -0.324 4.324 17 C -0.094 4.094 18 N -0.128 5.128 19 C 0.155 3.845 20 C -0.587 4.587 21 H 0.069 0.931 22 C -0.181 4.181 23 N -0.559 5.559 24 Si 0.794 3.206 25 H -0.199 1.199 26 H -0.196 1.196 27 H -0.196 1.196 28 N -0.181 5.181 29 H 0.051 0.949 30 H 0.090 0.910 31 H 0.106 0.894 32 H 0.128 0.872 33 H 0.114 0.886 34 H 0.210 0.790 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.129 0.871 38 H 0.220 0.780 39 H 0.245 0.755 40 H 0.255 0.745 41 H 0.183 0.817 42 H 0.217 0.783 43 H 0.039 0.961 44 H 0.076 0.924 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.116 0.215 29.254 29.543 hybrid contribution 0.149 -0.314 -0.242 0.424 sum -3.967 -0.100 29.012 29.282 Atomic orbital electron populations 1.22176 0.94476 1.02943 1.02264 1.20997 0.93800 0.96465 0.82517 0.91687 1.20199 0.87965 1.02517 0.96526 1.20262 0.97454 0.98372 1.09544 1.24150 0.89667 1.00782 0.99640 1.77315 1.24226 0.99458 1.16038 1.48766 1.06772 1.19169 1.42257 1.22107 0.87371 0.94819 1.00391 1.22955 0.83677 1.01265 1.01357 1.45033 1.70335 1.14116 1.07332 1.15849 0.77941 0.84714 0.80421 1.90813 1.57413 1.15590 1.84392 1.41460 1.68493 1.13845 1.05339 1.19110 0.99366 0.91971 0.86510 1.21676 1.17987 0.95725 0.97001 1.23147 0.98686 0.93635 0.93901 1.48809 1.48452 1.05644 1.09942 1.19310 0.95241 0.98481 0.71474 1.21377 0.99614 1.44712 0.92995 0.93110 1.25726 1.02572 0.95176 0.94629 1.69983 1.39460 1.48193 0.98245 0.85425 0.78708 0.78886 0.77555 1.19857 1.19604 1.19593 1.77240 1.29239 1.14424 0.97193 0.94885 0.91020 0.89447 0.87156 0.88626 0.78961 0.89270 0.90301 0.87131 0.78018 0.75450 0.74484 0.81673 0.78293 0.96073 0.92399 0.91797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 9.48 71.98 0.68 -1.42 16 2 C 0.17 2.44 2.56 44.99 0.12 2.56 16 3 H 0.06 1.31 7.58 -2.39 -0.02 1.29 16 4 C -0.03 -0.28 5.24 29.85 0.16 -0.13 16 5 C -0.24 -3.55 5.09 -20.14 -0.10 -3.66 16 6 C 0.04 0.80 11.92 85.24 1.02 1.82 16 7 N -0.35 -8.38 12.58 -57.03 -0.72 -9.10 16 8 N -0.39 -7.13 4.01 -369.55 -1.48 -8.61 16 9 C 0.09 1.01 11.47 127.77 1.47 2.48 16 10 C 0.05 0.77 11.40 83.54 0.95 1.72 16 11 N -0.71 -13.11 4.76 -457.80 -2.18 -15.29 16 12 C 0.71 20.87 8.50 179.05 1.52 22.39 16 13 O -0.60 -21.97 13.13 -4.01 -0.05 -22.02 16 14 N -0.64 -20.48 5.45 -321.23 -1.75 -22.23 16 15 C 0.29 12.02 8.11 133.32 1.08 13.11 16 16 C -0.29 -12.11 9.61 22.11 0.21 -11.89 16 17 C 0.05 2.27 11.44 83.52 0.96 3.22 16 18 N -0.35 -16.93 3.67 -351.86 -1.29 -18.22 16 19 C 0.27 14.62 6.26 85.63 0.54 15.16 16 20 C -0.55 -31.80 9.24 25.60 0.24 -31.56 16 21 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 22 C 0.02 1.09 5.46 84.66 0.46 1.55 16 23 N -0.92 -53.01 13.29 21.45 0.28 -52.72 16 24 Si 0.97 44.52 29.54 68.60 2.03 46.55 16 25 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 26 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 27 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 28 N -0.35 -16.94 12.42 -54.44 -0.68 -17.62 16 29 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.09 0.75 8.14 -2.39 -0.02 0.74 16 32 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.19 2.59 8.06 -2.91 -0.02 2.56 16 35 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.20 1.35 8.06 -2.91 -0.02 1.33 16 39 H 0.41 5.15 8.62 -92.70 -0.80 4.36 16 40 H 0.42 10.86 8.84 -92.70 -0.82 10.04 16 41 H 0.17 6.69 5.91 -2.91 -0.02 6.67 16 42 H 0.20 6.56 8.06 -2.91 -0.02 6.53 16 43 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.06 3.02 8.07 -2.39 -0.02 3.00 16 45 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -81.85 388.53 2.86 -78.99 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: -0.59 Total: 24.92 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: 9.29 Total: 15.36 kcal Atomic # 7 Polarization: -135.98 SS G_CDS: -7.81 Total: -143.79 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.05 Total: -22.02 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -81.85 2.86 -78.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434700949.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.931 kcal (2) G-P(sol) polarization free energy of solvation -81.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds