Wall clock time and date at job start Tue Mar 31 2020 17:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38060 * 126.29218 * 2 1 4 4 C 1.47399 * 126.41574 * 359.97438 * 3 2 1 5 5 O 1.21605 * 120.00493 * 359.97438 * 4 3 2 6 6 N 1.34784 * 119.99961 * 180.02562 * 4 3 2 7 7 C 1.39804 * 120.00212 * 179.97438 * 6 4 3 8 8 N 1.33644 * 125.60501 * 0.02713 * 7 6 4 9 9 C 1.30856 * 109.77885 * 180.02562 * 8 7 6 10 10 N 1.34368 * 108.20584 * 359.97438 * 9 8 7 11 11 C 1.46496 * 126.76880 * 179.97438 * 10 9 8 12 12 C 1.53002 * 109.46947 * 75.03327 * 11 10 9 13 13 C 1.52993 * 109.47722 * 195.03427 * 11 10 9 14 14 C 1.53000 * 109.47207 * 315.03953 * 11 10 9 15 15 N 1.31173 * 125.60869 * 180.02562 * 7 6 4 16 16 C 1.41296 * 107.16616 * 180.26037 * 3 2 1 17 17 N 1.30450 * 108.02399 * 359.59079 * 16 3 2 18 18 N 1.34266 * 126.29236 * 180.02562 * 2 1 3 19 19 C 1.46495 * 125.75543 * 359.97438 * 18 2 1 20 20 C 1.50704 * 109.47199 * 89.99524 * 19 18 2 21 21 H 1.07999 * 119.99909 * 0.02562 * 20 19 18 22 22 C 1.37872 * 120.00027 * 180.02562 * 20 19 18 23 23 N 1.31518 * 120.00326 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99863 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46881 * 90.00209 * 24 22 20 26 26 H 1.48495 * 109.46931 * 209.99563 * 24 22 20 27 27 H 1.48491 * 109.47011 * 329.99952 * 24 22 20 28 28 H 1.09000 * 109.46515 * 89.97484 * 1 2 3 29 29 H 1.08994 * 109.46946 * 209.97783 * 1 2 3 30 30 H 1.08999 * 109.47239 * 329.97560 * 1 2 3 31 31 H 0.97003 * 119.99739 * 359.97438 * 6 4 3 32 32 H 1.07998 * 125.89552 * 179.97438 * 9 8 7 33 33 H 1.09002 * 109.47091 * 60.00200 * 12 11 10 34 34 H 1.09002 * 109.47717 * 180.02562 * 12 11 10 35 35 H 1.08997 * 109.47246 * 300.00225 * 12 11 10 36 36 H 1.09006 * 109.47184 * 59.99727 * 13 11 10 37 37 H 1.09002 * 109.47401 * 180.02562 * 13 11 10 38 38 H 1.09002 * 109.46918 * 300.00169 * 13 11 10 39 39 H 1.08997 * 109.47345 * 59.99554 * 14 11 10 40 40 H 1.09002 * 109.47266 * 179.97438 * 14 11 10 41 41 H 1.09000 * 109.47054 * 299.99304 * 14 11 10 42 42 H 1.08003 * 125.99008 * 179.72503 * 16 3 2 43 43 H 1.09000 * 109.47509 * 209.99554 * 19 18 2 44 44 H 1.08998 * 109.47040 * 330.00086 * 19 18 2 45 45 H 0.96994 * 120.00089 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1128 0.0000 4 6 1.8861 2.5201 -0.0005 5 8 0.6998 2.7878 -0.0015 6 7 2.8003 3.5106 -0.0010 7 6 2.3848 4.8454 -0.0020 8 7 1.1160 5.2654 -0.0021 9 6 1.0826 6.5735 -0.0038 10 7 2.3479 7.0258 -0.0042 11 6 2.7786 8.4260 -0.0064 12 6 2.5721 9.0253 1.3861 13 6 4.2602 8.5034 -0.3803 14 6 1.9533 9.2119 -1.0273 15 7 3.1761 5.8916 -0.0030 16 6 3.6592 0.6498 -0.0061 17 7 3.6341 -0.6544 -0.0007 18 7 2.3018 -1.0822 -0.0005 19 6 1.8502 -2.4758 -0.0006 20 6 1.6948 -2.9534 -1.4214 21 1 1.9111 -2.2857 -2.2423 22 6 1.2763 -4.2427 -1.6735 23 7 1.0124 -5.0557 -0.6739 24 14 1.0843 -4.8349 -3.4347 25 1 2.3652 -5.4241 -3.9012 26 1 0.0148 -5.8631 -3.4974 27 1 0.7206 -3.6885 -4.3055 28 1 -0.3632 0.0005 -1.0277 29 1 -0.3633 -0.8901 0.5135 30 1 -0.3634 0.8897 0.5142 31 1 3.7465 3.2971 -0.0006 32 1 0.1919 7.1842 -0.0047 33 1 3.1601 8.4655 2.1134 34 1 2.8922 10.0673 1.3845 35 1 1.5167 8.9703 1.6525 36 1 4.4073 8.0764 -1.3724 37 1 4.5807 9.5452 -0.3815 38 1 4.8481 7.9435 0.3470 39 1 0.8978 9.1569 -0.7609 40 1 2.2735 10.2538 -1.0286 41 1 2.1004 8.7850 -2.0194 42 1 4.5451 1.2675 -0.0119 43 1 2.5851 -3.0959 0.5128 44 1 0.8918 -2.5472 0.5136 45 1 0.7184 -5.9628 -0.8512 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001435650916.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:58 Heat of formation + Delta-G solvation = 131.605470 kcal Electronic energy + Delta-G solvation = -27663.245726 eV Core-core repulsion = 23719.821725 eV Total energy + Delta-G solvation = -3943.424001 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 5.91 seconds Orbital eigenvalues (eV) -42.22835 -40.80140 -38.87718 -37.38952 -34.52689 -33.84604 -32.08761 -31.51327 -31.19320 -30.23537 -27.97642 -27.87436 -27.38752 -26.64988 -23.83479 -23.32951 -22.77827 -21.09531 -20.38601 -19.46045 -18.99861 -17.57798 -17.02076 -16.75316 -16.21130 -16.10078 -15.20490 -14.94457 -14.62362 -14.53109 -14.49597 -14.30451 -13.98656 -13.72276 -13.21881 -13.08046 -12.92076 -12.77072 -12.58948 -12.42788 -12.28779 -12.16614 -12.09370 -11.82234 -11.77826 -11.46711 -11.34118 -11.12058 -10.87982 -10.80868 -10.37191 -10.24700 -9.93306 -9.91550 -9.84065 -9.31226 -8.70101 -8.62989 -8.58899 -7.94546 -6.32702 -4.40459 1.50334 1.91766 2.14551 2.72852 2.93479 3.10045 3.19595 3.25913 3.29361 3.42800 3.97652 3.98628 4.23759 4.25405 4.30280 4.35196 4.78383 4.93490 4.96778 5.03345 5.08725 5.12650 5.15485 5.24608 5.28111 5.32095 5.46333 5.50090 5.60465 5.66150 5.74753 5.82140 5.90756 6.15188 6.24702 6.44398 6.54064 6.65719 6.77428 6.84573 6.92048 7.13032 7.33208 7.56521 7.76868 7.78374 8.23546 8.36351 8.54740 8.64986 9.26450 10.75528 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.028229 B = 0.002120 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.659301 B =13201.317102 C =13313.662780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.172 3.828 3 C -0.330 4.330 4 C 0.603 3.397 5 O -0.494 6.494 6 N -0.631 5.631 7 C 0.457 3.543 8 N -0.516 5.516 9 C 0.264 3.736 10 N -0.371 5.371 11 C 0.180 3.820 12 C -0.159 4.159 13 C -0.143 4.143 14 C -0.160 4.160 15 N -0.346 5.346 16 C 0.059 3.941 17 N -0.293 5.293 18 N -0.313 5.313 19 C 0.251 3.749 20 C -0.540 4.540 21 H 0.066 0.934 22 C 0.067 3.933 23 N -0.889 5.889 24 Si 0.908 3.092 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.271 1.271 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.419 0.581 32 H 0.215 0.785 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.083 0.917 41 H 0.068 0.932 42 H 0.177 0.823 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.613 28.517 2.715 28.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.034 3.966 3 C -0.346 4.346 4 C 0.393 3.607 5 O -0.365 6.365 6 N -0.284 5.284 7 C 0.088 3.912 8 N -0.246 5.246 9 C -0.034 4.034 10 N -0.165 5.165 11 C 0.096 3.904 12 C -0.217 4.217 13 C -0.201 4.201 14 C -0.218 4.218 15 N -0.182 5.182 16 C -0.129 4.129 17 N -0.113 5.113 18 N -0.089 5.089 19 C 0.134 3.866 20 C -0.578 4.578 21 H 0.084 0.916 22 C -0.137 4.137 23 N -0.527 5.527 24 Si 0.735 3.265 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.196 1.196 28 H 0.104 0.896 29 H 0.093 0.907 30 H 0.113 0.887 31 H 0.257 0.743 32 H 0.231 0.769 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.101 0.899 41 H 0.087 0.913 42 H 0.194 0.806 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.852 26.941 2.775 27.233 hybrid contribution -0.064 0.404 -0.948 1.033 sum 2.787 27.345 1.827 27.548 Atomic orbital electron populations 1.20602 0.86606 1.03944 1.04094 1.21457 0.95010 0.86367 0.93764 1.19431 0.93366 0.91469 1.30346 1.17418 0.84959 0.83341 0.75008 1.90815 1.15685 1.83192 1.46807 1.42555 1.11368 0.99620 1.74902 1.20380 0.87535 0.86566 0.96723 1.70689 1.20081 1.08480 1.25361 1.25971 0.90018 0.90888 0.96514 1.50462 1.04448 1.05766 1.55837 1.20791 0.97137 0.75536 0.96937 1.22269 1.03034 1.01570 0.94874 1.21916 0.92473 1.02442 1.03260 1.22261 1.00158 1.00637 0.98795 1.78109 1.15161 0.91103 1.33809 1.23763 0.96245 0.92714 1.00134 1.77154 0.98604 1.12154 1.23340 1.49387 1.02460 1.08324 1.48750 1.19879 0.96485 0.70780 0.99497 1.21244 1.47417 0.98167 0.90979 0.91627 1.24923 0.94437 0.96004 0.98308 1.69911 1.44500 1.07162 1.31115 0.86318 0.78075 0.78640 0.83473 1.20256 1.20792 1.19585 0.89645 0.90727 0.88699 0.74333 0.76862 0.91491 0.90234 0.91663 0.91553 0.90989 0.90932 0.91405 0.89853 0.91326 0.80579 0.92433 0.92449 0.92109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.73 9.57 36.01 0.34 -1.38 16 2 C 0.17 3.52 7.01 -81.59 -0.57 2.95 16 3 C -0.33 -6.15 6.13 -105.07 -0.64 -6.79 16 4 C 0.60 10.79 7.78 -12.53 -0.10 10.70 16 5 O -0.49 -10.07 13.51 5.27 0.07 -10.00 16 6 N -0.63 -9.44 5.43 -13.81 -0.07 -9.52 16 7 C 0.46 7.05 8.81 -320.92 -2.83 4.23 16 8 N -0.52 -8.11 9.37 -14.94 -0.14 -8.25 16 9 C 0.26 2.86 11.79 -90.69 -1.07 1.79 16 10 N -0.37 -3.79 3.44 -49.90 -0.17 -3.96 16 11 C 0.18 1.13 1.25 -131.82 -0.16 0.97 16 12 C -0.16 -0.77 8.74 37.16 0.32 -0.45 16 13 C -0.14 -0.90 8.12 37.15 0.30 -0.60 16 14 C -0.16 -0.66 8.30 37.16 0.31 -0.35 16 15 N -0.35 -4.61 11.86 30.03 0.36 -4.26 16 16 C 0.06 1.03 11.50 -16.98 -0.20 0.83 16 17 N -0.29 -6.30 12.50 30.86 0.39 -5.91 16 18 N -0.31 -7.07 3.56 -57.77 -0.21 -7.28 16 19 C 0.25 6.24 5.97 -5.19 -0.03 6.21 16 20 C -0.54 -14.56 9.39 -34.44 -0.32 -14.89 16 21 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 22 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 23 N -0.89 -24.63 13.29 55.43 0.74 -23.89 16 24 Si 0.91 20.92 29.54 -169.99 -5.02 15.90 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 28 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 29 H 0.07 1.32 7.05 -51.93 -0.37 0.95 16 30 H 0.09 1.67 6.50 -51.93 -0.34 1.33 16 31 H 0.42 4.99 7.78 -40.82 -0.32 4.68 16 32 H 0.22 1.32 7.60 -52.49 -0.40 0.92 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 38 H 0.07 0.56 8.07 -51.93 -0.42 0.14 16 39 H 0.07 0.21 7.43 -51.93 -0.39 -0.17 16 40 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 41 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.18 2.20 7.50 -52.48 -0.39 1.80 16 43 H 0.06 1.52 8.14 -51.93 -0.42 1.09 16 44 H 0.06 1.42 7.02 -51.93 -0.36 1.05 16 45 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 381.96 15.07 5.76 5.76 Total: -1.00 -34.50 381.96 -9.38 -43.89 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -6.33 Total: 2.60 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: -4.74 Total: 4.93 kcal Atomic # 7 Polarization: -63.95 SS G_CDS: 0.89 Total: -63.07 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.07 Total: -10.00 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.50 -9.38 -43.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001435650916.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.491 kcal (2) G-P(sol) polarization free energy of solvation -34.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.91 seconds