Wall clock time and date at job start Tue Mar 31 2020 17:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38060 * 126.29218 * 2 1 4 4 C 1.47399 * 126.41574 * 359.97438 * 3 2 1 5 5 O 1.21605 * 120.00493 * 359.97438 * 4 3 2 6 6 N 1.34784 * 119.99961 * 180.02562 * 4 3 2 7 7 C 1.39804 * 120.00212 * 179.97438 * 6 4 3 8 8 N 1.33644 * 125.60501 * 0.02713 * 7 6 4 9 9 C 1.30856 * 109.77885 * 180.02562 * 8 7 6 10 10 N 1.34368 * 108.20584 * 359.97438 * 9 8 7 11 11 C 1.46496 * 126.76880 * 179.97438 * 10 9 8 12 12 C 1.53002 * 109.46947 * 75.03327 * 11 10 9 13 13 C 1.52993 * 109.47722 * 195.03427 * 11 10 9 14 14 C 1.53000 * 109.47207 * 315.03953 * 11 10 9 15 15 N 1.31173 * 125.60869 * 180.02562 * 7 6 4 16 16 C 1.41296 * 107.16616 * 180.26037 * 3 2 1 17 17 N 1.30450 * 108.02399 * 359.59079 * 16 3 2 18 18 N 1.34266 * 126.29236 * 180.02562 * 2 1 3 19 19 C 1.46495 * 125.75543 * 359.97438 * 18 2 1 20 20 C 1.50704 * 109.47199 * 89.99524 * 19 18 2 21 21 H 1.07999 * 119.99909 * 0.02562 * 20 19 18 22 22 C 1.37872 * 120.00027 * 180.02562 * 20 19 18 23 23 N 1.31518 * 120.00326 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99863 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46881 * 90.00209 * 24 22 20 26 26 H 1.48495 * 109.46931 * 209.99563 * 24 22 20 27 27 H 1.48491 * 109.47011 * 329.99952 * 24 22 20 28 28 H 1.09000 * 109.46515 * 89.97484 * 1 2 3 29 29 H 1.08994 * 109.46946 * 209.97783 * 1 2 3 30 30 H 1.08999 * 109.47239 * 329.97560 * 1 2 3 31 31 H 0.97003 * 119.99739 * 359.97438 * 6 4 3 32 32 H 1.07998 * 125.89552 * 179.97438 * 9 8 7 33 33 H 1.09002 * 109.47091 * 60.00200 * 12 11 10 34 34 H 1.09002 * 109.47717 * 180.02562 * 12 11 10 35 35 H 1.08997 * 109.47246 * 300.00225 * 12 11 10 36 36 H 1.09006 * 109.47184 * 59.99727 * 13 11 10 37 37 H 1.09002 * 109.47401 * 180.02562 * 13 11 10 38 38 H 1.09002 * 109.46918 * 300.00169 * 13 11 10 39 39 H 1.08997 * 109.47345 * 59.99554 * 14 11 10 40 40 H 1.09002 * 109.47266 * 179.97438 * 14 11 10 41 41 H 1.09000 * 109.47054 * 299.99304 * 14 11 10 42 42 H 1.08003 * 125.99008 * 179.72503 * 16 3 2 43 43 H 1.09000 * 109.47509 * 209.99554 * 19 18 2 44 44 H 1.08998 * 109.47040 * 330.00086 * 19 18 2 45 45 H 0.96994 * 120.00089 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1128 0.0000 4 6 1.8861 2.5201 -0.0005 5 8 0.6998 2.7878 -0.0015 6 7 2.8003 3.5106 -0.0010 7 6 2.3848 4.8454 -0.0020 8 7 1.1160 5.2654 -0.0021 9 6 1.0826 6.5735 -0.0038 10 7 2.3479 7.0258 -0.0042 11 6 2.7786 8.4260 -0.0064 12 6 2.5721 9.0253 1.3861 13 6 4.2602 8.5034 -0.3803 14 6 1.9533 9.2119 -1.0273 15 7 3.1761 5.8916 -0.0030 16 6 3.6592 0.6498 -0.0061 17 7 3.6341 -0.6544 -0.0007 18 7 2.3018 -1.0822 -0.0005 19 6 1.8502 -2.4758 -0.0006 20 6 1.6948 -2.9534 -1.4214 21 1 1.9111 -2.2857 -2.2423 22 6 1.2763 -4.2427 -1.6735 23 7 1.0124 -5.0557 -0.6739 24 14 1.0843 -4.8349 -3.4347 25 1 2.3652 -5.4241 -3.9012 26 1 0.0148 -5.8631 -3.4974 27 1 0.7206 -3.6885 -4.3055 28 1 -0.3632 0.0005 -1.0277 29 1 -0.3633 -0.8901 0.5135 30 1 -0.3634 0.8897 0.5142 31 1 3.7465 3.2971 -0.0006 32 1 0.1919 7.1842 -0.0047 33 1 3.1601 8.4655 2.1134 34 1 2.8922 10.0673 1.3845 35 1 1.5167 8.9703 1.6525 36 1 4.4073 8.0764 -1.3724 37 1 4.5807 9.5452 -0.3815 38 1 4.8481 7.9435 0.3470 39 1 0.8978 9.1569 -0.7609 40 1 2.2735 10.2538 -1.0286 41 1 2.1004 8.7850 -2.0194 42 1 4.5451 1.2675 -0.0119 43 1 2.5851 -3.0959 0.5128 44 1 0.8918 -2.5472 0.5136 45 1 0.7184 -5.9628 -0.8512 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001435650916.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:54 Heat of formation + Delta-G solvation = 112.132273 kcal Electronic energy + Delta-G solvation = -27664.090148 eV Core-core repulsion = 23719.821725 eV Total energy + Delta-G solvation = -3944.268422 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 3.37 seconds Orbital eigenvalues (eV) -43.17244 -42.34835 -40.20110 -38.05436 -35.90530 -35.62551 -33.83164 -32.79746 -32.43183 -31.24735 -29.22561 -28.37194 -28.30164 -28.14280 -25.55416 -24.35345 -24.12198 -22.41605 -21.25914 -20.80458 -20.34762 -18.86412 -18.71890 -18.12488 -17.13062 -17.05503 -16.81406 -16.39946 -16.15298 -15.66808 -15.52441 -15.27315 -14.98076 -14.80547 -14.73747 -14.27621 -14.09776 -13.69857 -13.59254 -13.57586 -13.29835 -13.16574 -13.09696 -12.98720 -12.94002 -12.70334 -12.68760 -12.42517 -12.30986 -11.86674 -11.86163 -11.79131 -11.75540 -11.14185 -10.80065 -10.75817 -10.58955 -10.29001 -9.76253 -9.44674 -8.37617 -6.53624 0.42317 0.79279 1.04230 1.27407 1.37684 1.38662 1.49112 1.64503 1.96331 2.06561 2.32900 2.61579 2.94647 3.32785 3.51531 3.71158 3.77457 3.80712 3.91771 4.01745 4.11082 4.20463 4.36596 4.53861 4.62438 4.66388 4.66858 4.76572 4.79065 4.84902 4.86128 4.89526 4.89649 5.08511 5.13748 5.14642 5.23416 5.29553 5.37960 5.49424 5.59656 5.64638 5.74887 5.96783 6.01896 6.22282 6.54833 6.79104 7.12015 7.17308 7.33509 8.70362 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.028229 B = 0.002120 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.659301 B =13201.317102 C =13313.662780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.155 3.845 3 C -0.327 4.327 4 C 0.609 3.391 5 O -0.522 6.522 6 N -0.619 5.619 7 C 0.432 3.568 8 N -0.567 5.567 9 C 0.271 3.729 10 N -0.362 5.362 11 C 0.169 3.831 12 C -0.155 4.155 13 C -0.141 4.141 14 C -0.156 4.156 15 N -0.352 5.352 16 C 0.082 3.918 17 N -0.331 5.331 18 N -0.335 5.335 19 C 0.266 3.734 20 C -0.555 4.555 21 H 0.052 0.948 22 C 0.024 3.976 23 N -0.916 5.916 24 Si 0.971 3.029 25 H -0.273 1.273 26 H -0.271 1.271 27 H -0.270 1.270 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.101 0.899 31 H 0.432 0.568 32 H 0.258 0.742 33 H 0.046 0.954 34 H 0.107 0.893 35 H 0.073 0.927 36 H 0.050 0.950 37 H 0.101 0.899 38 H 0.053 0.947 39 H 0.082 0.918 40 H 0.109 0.891 41 H 0.054 0.946 42 H 0.228 0.772 43 H 0.034 0.966 44 H 0.053 0.947 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.751 31.620 2.031 31.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.018 3.982 3 C -0.343 4.343 4 C 0.398 3.602 5 O -0.395 6.395 6 N -0.274 5.274 7 C 0.063 3.937 8 N -0.298 5.298 9 C -0.026 4.026 10 N -0.155 5.155 11 C 0.087 3.913 12 C -0.213 4.213 13 C -0.199 4.199 14 C -0.214 4.214 15 N -0.188 5.188 16 C -0.106 4.106 17 N -0.151 5.151 18 N -0.112 5.112 19 C 0.148 3.852 20 C -0.593 4.593 21 H 0.070 0.930 22 C -0.178 4.178 23 N -0.554 5.554 24 Si 0.795 3.205 25 H -0.198 1.198 26 H -0.196 1.196 27 H -0.195 1.195 28 H 0.103 0.897 29 H 0.093 0.907 30 H 0.120 0.880 31 H 0.272 0.728 32 H 0.273 0.727 33 H 0.065 0.935 34 H 0.125 0.875 35 H 0.092 0.908 36 H 0.069 0.931 37 H 0.120 0.880 38 H 0.072 0.928 39 H 0.101 0.899 40 H 0.127 0.873 41 H 0.073 0.927 42 H 0.244 0.756 43 H 0.052 0.948 44 H 0.071 0.929 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.030 30.108 2.101 30.333 hybrid contribution -0.038 -0.288 -0.690 0.749 sum 2.993 29.820 1.410 30.003 Atomic orbital electron populations 1.20579 0.85638 1.04209 1.04098 1.21913 0.95966 0.86507 0.93772 1.19595 0.93655 0.91619 1.29424 1.17217 0.84877 0.83362 0.74777 1.90795 1.16905 1.83600 1.48202 1.42214 1.11527 0.99509 1.74112 1.20506 0.88055 0.86664 0.98511 1.70603 1.20788 1.11074 1.27352 1.26663 0.91308 0.90005 0.94623 1.50820 1.04123 1.06396 1.54155 1.21295 0.97544 0.73630 0.98820 1.22268 1.03332 1.02659 0.93021 1.21924 0.92415 1.03926 1.01641 1.22287 1.00683 1.01419 0.97053 1.78021 1.16069 0.91586 1.33169 1.24534 0.97469 0.91716 0.96831 1.77115 0.98281 1.14172 1.25510 1.49125 1.03335 1.07782 1.50971 1.19414 0.95465 0.72132 0.98218 1.21384 1.47889 0.98491 0.91538 0.92990 1.25720 0.93855 0.95965 1.02235 1.69991 1.44824 1.07580 1.32983 0.85354 0.78328 0.78194 0.78635 1.19814 1.19593 1.19504 0.89698 0.90697 0.88045 0.72846 0.72675 0.93475 0.87470 0.90843 0.93121 0.88026 0.92774 0.89943 0.87253 0.92686 0.75617 0.94837 0.92925 0.91653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.27 9.57 71.24 0.68 -2.59 16 2 C 0.15 6.47 7.01 42.15 0.30 6.77 16 3 C -0.33 -12.10 6.13 -20.16 -0.12 -12.22 16 4 C 0.61 21.62 7.78 86.65 0.67 22.29 16 5 O -0.52 -21.39 13.51 -4.05 -0.05 -21.44 16 6 N -0.62 -18.13 5.43 -315.86 -1.71 -19.84 16 7 C 0.43 13.09 8.81 260.83 2.30 15.39 16 8 N -0.57 -17.42 9.37 -201.18 -1.88 -19.30 16 9 C 0.27 5.37 11.79 180.37 2.13 7.49 16 10 N -0.36 -6.76 3.44 -311.78 -1.07 -7.83 16 11 C 0.17 1.69 1.25 3.60 0.00 1.69 16 12 C -0.15 -1.03 8.74 71.98 0.63 -0.40 16 13 C -0.14 -1.50 8.12 71.98 0.58 -0.92 16 14 C -0.16 -0.74 8.30 71.98 0.60 -0.14 16 15 N -0.35 -9.10 11.86 -58.92 -0.70 -9.79 16 16 C 0.08 2.77 11.50 85.65 0.99 3.75 16 17 N -0.33 -14.35 12.50 -56.27 -0.70 -15.05 16 18 N -0.34 -15.61 3.56 -336.68 -1.20 -16.80 16 19 C 0.27 13.79 5.97 85.64 0.51 14.31 16 20 C -0.55 -30.72 9.39 25.60 0.24 -30.48 16 21 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 22 C 0.02 1.29 5.46 84.65 0.46 1.75 16 23 N -0.92 -51.40 13.29 21.45 0.28 -51.12 16 24 Si 0.97 43.01 29.54 68.60 2.03 45.04 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 26 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 27 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 28 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 29 H 0.07 2.75 7.05 -2.39 -0.02 2.73 16 30 H 0.10 3.64 6.50 -2.39 -0.02 3.63 16 31 H 0.43 9.72 7.78 -92.71 -0.72 9.00 16 32 H 0.26 2.34 7.60 -2.91 -0.02 2.31 16 33 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 35 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 37 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.05 0.78 8.07 -2.39 -0.02 0.76 16 39 H 0.08 0.17 7.43 -2.39 -0.02 0.16 16 40 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 41 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.23 4.99 7.50 -2.91 -0.02 4.97 16 43 H 0.03 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.05 2.72 7.02 -2.39 -0.02 2.71 16 45 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -77.41 381.96 5.25 -72.16 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 0.30 Total: 17.31 kcal Atomic # 6 Polarization: 16.71 SS G_CDS: 9.97 Total: 26.68 kcal Atomic # 7 Polarization: -132.76 SS G_CDS: -6.99 Total: -139.75 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.05 Total: -21.44 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -77.41 5.25 -72.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001435650916.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.296 kcal (2) G-P(sol) polarization free energy of solvation -77.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.37 seconds