Wall clock time and date at job start Tue Mar 31 2020 17:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37894 * 126.28772 * 2 1 4 4 C 1.47789 * 126.38829 * 359.97438 * 3 2 1 5 5 O 1.21876 * 119.99743 * 0.02562 * 4 3 2 6 6 N 1.33931 * 120.00174 * 180.02562 * 4 3 2 7 7 C 1.32807 * 120.00251 * 180.02562 * 6 4 3 8 8 N 1.34284 * 126.11525 * 359.69492 * 7 6 4 9 9 C 1.30749 * 110.10741 * 179.81623 * 8 7 6 10 10 N 1.35070 * 109.39525 * 0.44847 * 9 8 7 11 11 H 0.97003 * 126.60735 * 179.70470 * 10 9 8 12 12 N 1.37281 * 126.11934 * 179.97438 * 7 6 4 13 13 C 1.46498 * 127.03020 * 0.02562 * 12 7 6 14 14 C 1.53003 * 109.47007 * 179.97438 * 13 12 7 15 15 C 1.52996 * 109.47254 * 299.99514 * 13 12 7 16 16 C 1.52998 * 109.46957 * 59.99869 * 13 12 7 17 17 C 1.41172 * 107.22319 * 179.97438 * 3 2 1 18 18 N 1.30487 * 108.05024 * 359.75248 * 17 3 2 19 19 N 1.34366 * 126.28358 * 179.97438 * 2 1 3 20 20 C 1.46491 * 125.78300 * 359.97438 * 19 2 1 21 21 C 1.50702 * 109.46957 * 89.99994 * 20 19 2 22 22 H 1.08002 * 120.00299 * 0.02562 * 21 20 19 23 23 C 1.37884 * 119.99942 * 179.72213 * 21 20 19 24 24 N 1.31514 * 119.99698 * 0.28408 * 23 21 20 25 25 Si 1.86794 * 119.99837 * 180.27476 * 23 21 20 26 26 H 1.48496 * 109.47341 * 0.02562 * 25 23 21 27 27 H 1.48508 * 109.46983 * 120.00379 * 25 23 21 28 28 H 1.48503 * 109.47491 * 240.00192 * 25 23 21 29 29 H 1.08996 * 109.47216 * 270.04418 * 1 2 3 30 30 H 1.09000 * 109.47228 * 30.04486 * 1 2 3 31 31 H 1.09000 * 109.47492 * 150.04430 * 1 2 3 32 32 H 1.08001 * 125.29767 * 180.17385 * 9 8 7 33 33 H 1.08995 * 109.46982 * 59.99851 * 14 13 12 34 34 H 1.09000 * 109.47247 * 179.97438 * 14 13 12 35 35 H 1.09002 * 109.46993 * 300.00060 * 14 13 12 36 36 H 1.09004 * 109.46657 * 59.99914 * 15 13 12 37 37 H 1.09000 * 109.47156 * 180.02562 * 15 13 12 38 38 H 1.08995 * 109.47272 * 300.00478 * 15 13 12 39 39 H 1.08998 * 109.47589 * 60.00149 * 16 13 12 40 40 H 1.09000 * 109.46815 * 179.97438 * 16 13 12 41 41 H 1.08990 * 109.47378 * 299.99719 * 16 13 12 42 42 H 1.07997 * 125.97384 * 179.97438 * 17 3 2 43 43 H 1.09004 * 109.47166 * 330.00260 * 20 19 2 44 44 H 1.08994 * 109.47507 * 209.99966 * 20 19 2 45 45 H 0.97005 * 119.99651 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3231 1.1115 0.0000 4 6 1.8830 2.5224 -0.0005 5 8 0.6939 2.7897 -0.0006 6 7 2.7908 3.5070 -0.0010 7 6 2.3954 4.7749 -0.0009 8 7 1.1241 5.2074 -0.0063 9 6 1.0941 6.5146 -0.0005 10 7 2.3575 6.9923 -0.0011 11 1 2.6232 7.9252 -0.0016 12 7 3.2131 5.8776 -0.0009 13 6 4.6780 5.8897 -0.0014 14 6 5.1760 7.3364 -0.0017 15 6 5.1943 5.1724 1.2475 16 6 5.1935 5.1730 -1.2510 17 6 3.6574 0.6504 0.0006 18 7 3.6343 -0.6543 0.0063 19 7 2.3021 -1.0831 0.0005 20 6 1.8510 -2.4769 0.0016 21 6 1.6959 -2.9558 -1.4188 22 1 1.9121 -2.2888 -2.2403 23 6 1.2839 -4.2475 -1.6697 24 7 1.0210 -5.0598 -0.6694 25 14 1.0989 -4.8434 -3.4304 26 1 1.4535 -3.7450 -4.3646 27 1 2.0034 -5.9988 -3.6595 28 1 -0.3066 -5.2605 -3.6668 29 1 -0.3633 0.0008 1.0276 30 1 -0.3634 0.8896 -0.5145 31 1 -0.3634 -0.8904 -0.5131 32 1 0.1985 7.1182 -0.0002 33 1 4.8087 7.8473 0.8883 34 1 6.2660 7.3454 -0.0016 35 1 4.8082 7.8470 -0.8917 36 1 4.8394 4.1418 1.2473 37 1 6.2843 5.1818 1.2474 38 1 4.8270 5.6829 2.1377 39 1 4.8257 5.6840 -2.1407 40 1 6.2834 5.1824 -1.2515 41 1 4.8387 4.1425 -1.2511 42 1 4.5424 1.2692 0.0004 43 1 0.8926 -2.5481 0.5158 44 1 2.5860 -3.0962 0.5156 45 1 0.7308 -5.9684 -0.8460 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001436569850.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:48 Heat of formation + Delta-G solvation = 162.199830 kcal Electronic energy + Delta-G solvation = -28504.009420 eV Core-core repulsion = 24561.912090 eV Total energy + Delta-G solvation = -3942.097330 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.36855 -40.28385 -38.01755 -37.45174 -33.96816 -33.65057 -32.05782 -31.77387 -30.78801 -30.30565 -27.94050 -27.63302 -27.17701 -26.33260 -23.89535 -23.26470 -22.59826 -21.63990 -20.42420 -18.96438 -18.53436 -17.81782 -16.62946 -16.24790 -16.17444 -15.83673 -15.61950 -14.92719 -14.59089 -14.46007 -14.22845 -14.17276 -13.84598 -13.24865 -13.16273 -12.99146 -12.76250 -12.63912 -12.32476 -12.24133 -12.07195 -11.79463 -11.74012 -11.51012 -11.43542 -11.18891 -11.03230 -10.91044 -10.78281 -10.62403 -10.34006 -10.26744 -10.08793 -9.70452 -9.46297 -8.57558 -8.45296 -8.21889 -7.89037 -7.43698 -6.19026 -4.25666 0.85923 0.92427 2.43996 2.97913 3.26689 3.28170 3.33961 3.40560 3.48108 3.70216 4.07497 4.10926 4.28151 4.37093 4.42807 4.53256 4.80154 4.88367 4.94312 5.01717 5.15415 5.25138 5.33212 5.35550 5.41149 5.54215 5.62489 5.67799 5.79346 6.05527 6.07042 6.08962 6.17506 6.35107 6.40934 6.64758 6.76381 6.88618 7.08921 7.12679 7.28214 7.56141 7.62189 7.74419 7.95921 8.09996 8.18147 8.74468 8.83359 9.32426 9.40380 10.89020 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.020725 B = 0.002664 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.668753 B =10507.678349 C =10994.220057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.148 3.852 3 C -0.296 4.296 4 C 0.571 3.429 5 O -0.539 6.539 6 N -0.632 5.632 7 C 0.596 3.404 8 N -0.525 5.525 9 C 0.355 3.645 10 N -0.504 5.504 11 H 0.446 0.554 12 N -0.408 5.408 13 C 0.204 3.796 14 C -0.164 4.164 15 C -0.164 4.164 16 C -0.165 4.165 17 C 0.076 3.924 18 N -0.311 5.311 19 N -0.321 5.321 20 C 0.253 3.747 21 C -0.534 4.534 22 H 0.065 0.935 23 C 0.065 3.935 24 N -0.892 5.892 25 Si 0.906 3.094 26 H -0.271 1.271 27 H -0.281 1.281 28 H -0.281 1.281 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.235 0.765 33 H 0.063 0.937 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.094 0.906 37 H 0.077 0.923 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.077 0.923 41 H 0.094 0.906 42 H 0.177 0.823 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.983 31.313 2.763 31.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.012 3.988 3 C -0.312 4.312 4 C 0.360 3.640 5 O -0.416 6.416 6 N -0.393 5.393 7 C 0.237 3.763 8 N -0.258 5.258 9 C 0.058 3.942 10 N -0.231 5.231 11 H 0.293 0.707 12 N -0.217 5.217 13 C 0.122 3.878 14 C -0.222 4.222 15 C -0.223 4.223 16 C -0.223 4.223 17 C -0.110 4.110 18 N -0.131 5.131 19 N -0.098 5.098 20 C 0.135 3.865 21 C -0.573 4.573 22 H 0.084 0.916 23 C -0.138 4.138 24 N -0.530 5.530 25 Si 0.734 3.266 26 H -0.195 1.195 27 H -0.207 1.207 28 H -0.206 1.206 29 H 0.090 0.910 30 H 0.112 0.888 31 H 0.096 0.904 32 H 0.251 0.749 33 H 0.082 0.918 34 H 0.106 0.894 35 H 0.082 0.918 36 H 0.112 0.888 37 H 0.096 0.904 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.096 0.904 41 H 0.113 0.887 42 H 0.194 0.806 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.348 28.922 2.812 29.744 hybrid contribution -0.388 1.532 -0.916 1.827 sum 5.961 30.455 1.896 31.090 Atomic orbital electron populations 1.20544 0.87285 1.04453 1.02850 1.21440 0.94754 0.86836 0.95767 1.19473 0.92989 0.91927 1.26766 1.18194 0.84646 0.86592 0.74539 1.90762 1.19842 1.85426 1.45554 1.69457 1.37238 0.93309 1.39338 1.20978 0.81110 0.88563 0.85634 1.72205 1.19416 1.07406 1.26791 1.26209 0.86968 0.92896 0.88108 1.45309 1.02988 1.03636 1.71133 0.70667 1.48386 1.02927 0.97254 1.73083 1.20792 0.71826 0.96818 0.98341 1.22216 1.03601 0.94156 1.02231 1.22272 1.01436 1.03650 0.94902 1.22275 1.01445 1.03681 0.94909 1.23720 0.96988 0.91652 0.98680 1.77122 0.98432 1.12678 1.24883 1.49260 1.02671 1.07923 1.49984 1.19738 0.96206 0.71403 0.99105 1.21357 1.46734 0.97874 0.91322 0.91637 1.24930 0.94678 0.96064 0.98145 1.69938 1.45120 1.06989 1.30930 0.86292 0.77823 0.78781 0.83754 1.19529 1.20674 1.20648 0.90981 0.88803 0.90354 0.74903 0.91845 0.89443 0.91832 0.88759 0.90402 0.92580 0.92562 0.90397 0.88748 0.80579 0.92859 0.92746 0.92346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.96 9.34 36.00 0.34 -1.62 16 2 C 0.15 3.51 7.00 -81.61 -0.57 2.94 16 3 C -0.30 -6.67 6.13 -105.00 -0.64 -7.31 16 4 C 0.57 12.25 7.74 -12.73 -0.10 12.15 16 5 O -0.54 -12.41 13.37 5.03 0.07 -12.35 16 6 N -0.63 -11.20 8.08 -13.98 -0.11 -11.31 16 7 C 0.60 8.72 7.81 -321.67 -2.51 6.21 16 8 N -0.52 -7.35 9.19 -14.93 -0.14 -7.49 16 9 C 0.35 2.32 13.06 -90.14 -1.18 1.14 16 10 N -0.50 -2.47 6.82 29.64 0.20 -2.27 16 11 H 0.45 0.23 8.22 -182.28 -1.50 -1.27 16 12 N -0.41 -3.76 3.54 -49.37 -0.17 -3.93 16 13 C 0.20 1.46 1.18 -131.82 -0.15 1.30 16 14 C -0.16 -0.55 7.65 37.16 0.28 -0.27 16 15 C -0.16 -1.30 8.53 37.16 0.32 -0.98 16 16 C -0.16 -1.34 8.53 37.16 0.32 -1.02 16 17 C 0.08 1.63 11.81 -17.01 -0.20 1.43 16 18 N -0.31 -7.62 12.50 30.84 0.39 -7.24 16 19 N -0.32 -8.16 3.57 -57.80 -0.21 -8.37 16 20 C 0.25 6.86 5.79 -5.20 -0.03 6.83 16 21 C -0.53 -15.41 9.39 -34.44 -0.32 -15.73 16 22 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 23 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 24 N -0.89 -25.92 13.29 55.43 0.74 -25.18 16 25 Si 0.91 21.91 29.54 -169.99 -5.02 16.89 16 26 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 28 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 29 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.09 1.97 6.50 -51.93 -0.34 1.63 16 31 H 0.08 1.67 7.70 -51.93 -0.40 1.27 16 32 H 0.24 0.16 8.06 -52.49 -0.42 -0.27 16 33 H 0.06 0.16 8.11 -51.93 -0.42 -0.26 16 34 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 35 H 0.06 0.17 8.11 -51.93 -0.42 -0.25 16 36 H 0.09 1.05 7.02 -51.93 -0.36 0.69 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.09 1.08 7.02 -51.93 -0.36 0.72 16 42 H 0.18 3.11 8.06 -52.49 -0.42 2.69 16 43 H 0.05 1.44 7.63 -51.93 -0.40 1.04 16 44 H 0.05 1.55 8.14 -51.93 -0.42 1.13 16 45 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 380.15 15.07 5.73 5.73 Total: -1.00 -40.28 380.15 -10.64 -50.92 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -7.55 Total: -2.21 kcal Atomic # 6 Polarization: 11.36 SS G_CDS: -4.55 Total: 6.80 kcal Atomic # 7 Polarization: -66.48 SS G_CDS: 0.69 Total: -65.79 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: 0.07 Total: -12.35 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -40.28 -10.64 -50.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001436569850.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.120 kcal (2) G-P(sol) polarization free energy of solvation -40.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 172.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 162.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds