Wall clock time and date at job start Tue Mar 31 2020 17:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37894 * 126.28772 * 2 1 4 4 C 1.47789 * 126.38829 * 359.97438 * 3 2 1 5 5 O 1.21876 * 119.99743 * 0.02562 * 4 3 2 6 6 N 1.33931 * 120.00174 * 180.02562 * 4 3 2 7 7 C 1.32807 * 120.00251 * 180.02562 * 6 4 3 8 8 N 1.34284 * 126.11525 * 359.69492 * 7 6 4 9 9 C 1.30749 * 110.10741 * 179.81623 * 8 7 6 10 10 N 1.35070 * 109.39525 * 0.44847 * 9 8 7 11 11 H 0.97003 * 126.60735 * 179.70470 * 10 9 8 12 12 N 1.37281 * 126.11934 * 179.97438 * 7 6 4 13 13 C 1.46498 * 127.03020 * 0.02562 * 12 7 6 14 14 C 1.53003 * 109.47007 * 179.97438 * 13 12 7 15 15 C 1.52996 * 109.47254 * 299.99514 * 13 12 7 16 16 C 1.52998 * 109.46957 * 59.99869 * 13 12 7 17 17 C 1.41172 * 107.22319 * 179.97438 * 3 2 1 18 18 N 1.30487 * 108.05024 * 359.75248 * 17 3 2 19 19 N 1.34366 * 126.28358 * 179.97438 * 2 1 3 20 20 C 1.46491 * 125.78300 * 359.97438 * 19 2 1 21 21 C 1.50702 * 109.46957 * 89.99994 * 20 19 2 22 22 H 1.08002 * 120.00299 * 0.02562 * 21 20 19 23 23 C 1.37884 * 119.99942 * 179.72213 * 21 20 19 24 24 N 1.31514 * 119.99698 * 0.28408 * 23 21 20 25 25 Si 1.86794 * 119.99837 * 180.27476 * 23 21 20 26 26 H 1.48496 * 109.47341 * 0.02562 * 25 23 21 27 27 H 1.48508 * 109.46983 * 120.00379 * 25 23 21 28 28 H 1.48503 * 109.47491 * 240.00192 * 25 23 21 29 29 H 1.08996 * 109.47216 * 270.04418 * 1 2 3 30 30 H 1.09000 * 109.47228 * 30.04486 * 1 2 3 31 31 H 1.09000 * 109.47492 * 150.04430 * 1 2 3 32 32 H 1.08001 * 125.29767 * 180.17385 * 9 8 7 33 33 H 1.08995 * 109.46982 * 59.99851 * 14 13 12 34 34 H 1.09000 * 109.47247 * 179.97438 * 14 13 12 35 35 H 1.09002 * 109.46993 * 300.00060 * 14 13 12 36 36 H 1.09004 * 109.46657 * 59.99914 * 15 13 12 37 37 H 1.09000 * 109.47156 * 180.02562 * 15 13 12 38 38 H 1.08995 * 109.47272 * 300.00478 * 15 13 12 39 39 H 1.08998 * 109.47589 * 60.00149 * 16 13 12 40 40 H 1.09000 * 109.46815 * 179.97438 * 16 13 12 41 41 H 1.08990 * 109.47378 * 299.99719 * 16 13 12 42 42 H 1.07997 * 125.97384 * 179.97438 * 17 3 2 43 43 H 1.09004 * 109.47166 * 330.00260 * 20 19 2 44 44 H 1.08994 * 109.47507 * 209.99966 * 20 19 2 45 45 H 0.97005 * 119.99651 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3231 1.1115 0.0000 4 6 1.8830 2.5224 -0.0005 5 8 0.6939 2.7897 -0.0006 6 7 2.7908 3.5070 -0.0010 7 6 2.3954 4.7749 -0.0009 8 7 1.1241 5.2074 -0.0063 9 6 1.0941 6.5146 -0.0005 10 7 2.3575 6.9923 -0.0011 11 1 2.6232 7.9252 -0.0016 12 7 3.2131 5.8776 -0.0009 13 6 4.6780 5.8897 -0.0014 14 6 5.1760 7.3364 -0.0017 15 6 5.1943 5.1724 1.2475 16 6 5.1935 5.1730 -1.2510 17 6 3.6574 0.6504 0.0006 18 7 3.6343 -0.6543 0.0063 19 7 2.3021 -1.0831 0.0005 20 6 1.8510 -2.4769 0.0016 21 6 1.6959 -2.9558 -1.4188 22 1 1.9121 -2.2888 -2.2403 23 6 1.2839 -4.2475 -1.6697 24 7 1.0210 -5.0598 -0.6694 25 14 1.0989 -4.8434 -3.4304 26 1 1.4535 -3.7450 -4.3646 27 1 2.0034 -5.9988 -3.6595 28 1 -0.3066 -5.2605 -3.6668 29 1 -0.3633 0.0008 1.0276 30 1 -0.3634 0.8896 -0.5145 31 1 -0.3634 -0.8904 -0.5131 32 1 0.1985 7.1182 -0.0002 33 1 4.8087 7.8473 0.8883 34 1 6.2660 7.3454 -0.0016 35 1 4.8082 7.8470 -0.8917 36 1 4.8394 4.1418 1.2473 37 1 6.2843 5.1818 1.2474 38 1 4.8270 5.6829 2.1377 39 1 4.8257 5.6840 -2.1407 40 1 6.2834 5.1824 -1.2515 41 1 4.8387 4.1425 -1.2511 42 1 4.5424 1.2692 0.0004 43 1 0.8926 -2.5481 0.5158 44 1 2.5860 -3.0962 0.5156 45 1 0.7308 -5.9684 -0.8460 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001436569850.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:47 Heat of formation + Delta-G solvation = 135.541655 kcal Electronic energy + Delta-G solvation = -28505.165405 eV Core-core repulsion = 24561.912090 eV Total energy + Delta-G solvation = -3943.253315 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.18337 -42.07678 -39.43885 -38.06989 -35.75532 -35.03935 -33.77178 -32.84547 -32.57665 -31.30350 -29.11222 -28.35667 -28.27211 -28.11360 -25.50180 -24.51481 -23.76212 -22.69432 -21.74771 -20.46983 -19.66253 -18.93898 -18.80651 -17.58086 -17.05717 -16.83668 -16.64453 -16.38912 -16.09000 -15.96810 -15.55040 -15.15849 -14.85551 -14.72100 -14.67723 -14.21704 -14.00431 -13.59919 -13.52756 -13.48739 -13.28451 -13.16960 -13.03304 -12.88737 -12.70148 -12.66397 -12.33711 -12.32322 -12.03985 -11.98570 -11.79010 -11.73517 -11.43406 -11.10216 -11.01650 -10.74950 -10.12905 -9.82632 -9.40188 -8.80717 -8.35750 -6.52697 -0.02977 0.24298 0.93384 1.36455 1.36685 1.47232 1.51805 1.81245 2.08281 2.34148 2.66220 2.94628 3.32980 3.39082 3.59674 3.61971 3.79500 3.88590 3.91446 4.03039 4.28127 4.29877 4.52816 4.60496 4.65035 4.67433 4.68490 4.74380 4.79079 4.81680 4.89669 4.92488 4.94176 5.07028 5.12346 5.16283 5.27401 5.39139 5.46913 5.51464 5.74838 5.77700 5.95455 6.15934 6.40936 6.57081 6.58772 6.94863 7.12466 7.18041 7.94281 8.72126 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.020725 B = 0.002664 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.668753 B =10507.678349 C =10994.220057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.128 3.872 3 C -0.300 4.300 4 C 0.565 3.435 5 O -0.574 6.574 6 N -0.656 5.656 7 C 0.585 3.415 8 N -0.597 5.597 9 C 0.380 3.620 10 N -0.467 5.467 11 H 0.472 0.528 12 N -0.397 5.397 13 C 0.196 3.804 14 C -0.157 4.157 15 C -0.162 4.162 16 C -0.163 4.163 17 C 0.092 3.908 18 N -0.344 5.344 19 N -0.342 5.342 20 C 0.270 3.730 21 C -0.555 4.555 22 H 0.048 0.952 23 C 0.022 3.978 24 N -0.917 5.917 25 Si 0.975 3.025 26 H -0.275 1.275 27 H -0.270 1.270 28 H -0.266 1.266 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.069 0.931 32 H 0.294 0.706 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.077 0.923 36 H 0.057 0.943 37 H 0.100 0.900 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.101 0.899 41 H 0.056 0.944 42 H 0.210 0.790 43 H 0.048 0.952 44 H 0.030 0.970 45 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.616 35.472 2.043 36.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.007 4.007 3 C -0.315 4.315 4 C 0.353 3.647 5 O -0.453 6.453 6 N -0.421 5.421 7 C 0.225 3.775 8 N -0.332 5.332 9 C 0.086 3.914 10 N -0.195 5.195 11 H 0.325 0.675 12 N -0.202 5.202 13 C 0.115 3.885 14 C -0.214 4.214 15 C -0.220 4.220 16 C -0.221 4.221 17 C -0.094 4.094 18 N -0.164 5.164 19 N -0.120 5.120 20 C 0.151 3.849 21 C -0.593 4.593 22 H 0.066 0.934 23 C -0.179 4.179 24 N -0.555 5.555 25 Si 0.798 3.202 26 H -0.200 1.200 27 H -0.195 1.195 28 H -0.191 1.191 29 H 0.105 0.895 30 H 0.112 0.888 31 H 0.088 0.912 32 H 0.309 0.691 33 H 0.097 0.903 34 H 0.122 0.878 35 H 0.096 0.904 36 H 0.076 0.924 37 H 0.119 0.881 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.119 0.881 41 H 0.075 0.925 42 H 0.227 0.773 43 H 0.066 0.934 44 H 0.049 0.951 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.036 33.276 2.106 34.077 hybrid contribution -0.501 0.648 -0.641 1.040 sum 6.536 33.923 1.465 34.578 Atomic orbital electron populations 1.20476 0.85998 1.03813 1.03619 1.21931 0.95864 0.86835 0.96050 1.19893 0.93161 0.92963 1.25507 1.18198 0.84848 0.86845 0.74836 1.90711 1.20823 1.85617 1.48200 1.69295 1.35834 0.94274 1.42737 1.21052 0.82515 0.88885 0.85072 1.72105 1.19558 1.11210 1.30347 1.27339 0.88642 0.91226 0.84230 1.45516 1.02164 1.03814 1.67970 0.67487 1.48722 1.03907 0.97494 1.70121 1.21110 0.70427 0.99516 0.97449 1.22217 1.04685 0.90885 1.03652 1.22245 1.02913 1.01523 0.95368 1.22250 1.02933 1.01506 0.95440 1.24205 0.97931 0.90803 0.96442 1.77054 0.98371 1.14231 1.26760 1.49072 1.03329 1.07533 1.52053 1.19317 0.95067 0.72401 0.98122 1.21438 1.47965 0.98421 0.91515 0.93367 1.25771 0.93752 0.95798 1.02544 1.70015 1.45005 1.07513 1.32998 0.85259 0.78591 0.78118 0.78207 1.19961 1.19527 1.19063 0.89519 0.88840 0.91220 0.69066 0.90316 0.87809 0.90413 0.92416 0.88094 0.92368 0.92503 0.88084 0.92495 0.77317 0.93436 0.95147 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.59 9.34 71.23 0.67 -2.93 16 2 C 0.13 6.40 7.00 42.09 0.29 6.70 16 3 C -0.30 -14.18 6.13 -20.11 -0.12 -14.30 16 4 C 0.57 25.35 7.74 86.90 0.67 26.02 16 5 O -0.57 -27.60 13.37 -4.91 -0.07 -27.67 16 6 N -0.66 -24.04 8.08 -316.77 -2.56 -26.60 16 7 C 0.58 16.90 7.81 261.09 2.04 18.93 16 8 N -0.60 -16.08 9.19 -201.14 -1.85 -17.93 16 9 C 0.38 3.55 13.06 180.18 2.35 5.90 16 10 N -0.47 -2.56 6.82 -60.15 -0.41 -2.97 16 11 H 0.47 -2.25 8.22 -213.05 -1.75 -4.01 16 12 N -0.40 -6.39 3.54 -310.10 -1.10 -7.49 16 13 C 0.20 2.29 1.18 3.60 0.00 2.30 16 14 C -0.16 -0.31 7.65 71.98 0.55 0.24 16 15 C -0.16 -2.31 8.53 71.98 0.61 -1.69 16 16 C -0.16 -2.40 8.53 71.98 0.61 -1.79 16 17 C 0.09 4.11 11.81 85.61 1.01 5.12 16 18 N -0.34 -17.68 12.50 -56.34 -0.70 -18.38 16 19 N -0.34 -18.39 3.57 -336.77 -1.20 -19.59 16 20 C 0.27 15.47 5.79 85.64 0.50 15.97 16 21 C -0.56 -33.35 9.39 25.60 0.24 -33.11 16 22 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 23 C 0.02 1.29 5.46 84.66 0.46 1.75 16 24 N -0.92 -54.23 13.29 21.45 0.28 -53.95 16 25 Si 0.97 45.44 29.54 68.60 2.03 47.47 16 26 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 27 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 28 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 29 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 30 H 0.09 4.14 6.50 -2.39 -0.02 4.12 16 31 H 0.07 3.15 7.70 -2.39 -0.02 3.13 16 32 H 0.29 -1.26 8.06 -2.91 -0.02 -1.29 16 33 H 0.08 -0.03 8.11 -2.39 -0.02 -0.05 16 34 H 0.10 -0.01 8.14 -2.39 -0.02 -0.03 16 35 H 0.08 -0.01 8.11 -2.39 -0.02 -0.03 16 36 H 0.06 1.30 7.02 -2.38 -0.02 1.29 16 37 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.06 1.32 7.02 -2.39 -0.02 1.31 16 42 H 0.21 7.58 8.06 -2.91 -0.02 7.56 16 43 H 0.05 2.72 7.63 -2.38 -0.02 2.70 16 44 H 0.03 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.27 15.02 8.31 -92.70 -0.77 14.25 16 Total: -1.00 -95.49 380.15 3.59 -91.90 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -0.73 Total: 6.10 kcal Atomic # 6 Polarization: 19.22 SS G_CDS: 9.89 Total: 29.12 kcal Atomic # 7 Polarization: -139.38 SS G_CDS: -7.54 Total: -146.91 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -0.07 Total: -27.67 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -95.49 3.59 -91.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001436569850.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 227.443 kcal (2) G-P(sol) polarization free energy of solvation -95.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds